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Aliases for KRI1 Gene

Aliases for KRI1 Gene

  • KRI1 Homolog (S. Cerevisiae) 2 3

External Ids for KRI1 Gene

Summaries for KRI1 Gene

Entrez Gene Summary for KRI1 Gene

  • This gene overlaps with the gene for cysteine endopeptidase AUT-like 4 in a head-to-tail orientation. [provided by RefSeq, Jul 2008]

GeneCards Summary for KRI1 Gene

KRI1 (KRI1 Homolog (S. Cerevisiae)) is a Protein Coding gene. Diseases associated with KRI1 include dental pulp necrosis.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRI1 Gene

Genomics for KRI1 Gene

Genomic Location for KRI1 Gene

Start:
10,553,078 bp from pter
End:
10,566,037 bp from pter
Size:
12,960 bases
Orientation:
Minus strand

Genomic View for KRI1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KRI1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRI1 Gene

Regulatory Elements for KRI1 Gene

Proteins for KRI1 Gene

  • Protein details for KRI1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9T8-KRI1_HUMAN
    Recommended name:
    Protein KRI1 homolog
    Protein Accession:
    Q8N9T8
    Secondary Accessions:
    • Q2M1R5
    • Q2M1R7
    • Q7L5J7
    • Q96G92
    • Q9BU50
    • Q9H6I1
    • Q9H978

    Protein attributes for KRI1 Gene

    Size:
    703 amino acids
    Molecular mass:
    82598 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB14357.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB15278.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC04240.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305};

neXtProt entry for KRI1 Gene

Proteomics data for KRI1 Gene at MOPED

Post-translational modifications for KRI1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KRI1 Gene

No data available for DME Specific Peptides for KRI1 Gene

Domains for KRI1 Gene

Protein Domains for KRI1 Gene

UniProtKB/Swiss-Prot:

KRI1_HUMAN
Family:
  • Belongs to the KRI1 family.:
    • Q8N9T8
genes like me logo Genes that share domains with KRI1: view

No data available for Gene Families for KRI1 Gene

Function for KRI1 Gene

Gene Ontology (GO) - Molecular Function for KRI1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with KRI1: view

miRNA for KRI1 Gene

miRTarBase miRNAs that target KRI1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for KRI1 Gene

Localization for KRI1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KRI1 Gene COMPARTMENTS Subcellular localization image for KRI1 gene
Compartment Confidence
nucleus 4
mitochondrion 2
cytosol 1

Gene Ontology (GO) - Cellular Components for KRI1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IDA --
genes like me logo Genes that share ontologies with KRI1: view

Pathways for KRI1 Gene

SuperPathways for KRI1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KRI1 Gene

None

No data available for Pathways by source for KRI1 Gene

Transcripts for KRI1 Gene

Unigene Clusters for KRI1 Gene

KRI1 homolog (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KRI1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7: - - -
SP8:

Relevant External Links for KRI1 Gene

GeneLoc Exon Structure for
KRI1
ECgene alternative splicing isoforms for
KRI1

Expression for KRI1 Gene

mRNA expression in normal human tissues for KRI1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for KRI1 Gene

SOURCE GeneReport for Unigene cluster for KRI1 Gene Hs.709967

genes like me logo Genes that share expressions with KRI1: view

Orthologs for KRI1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for KRI1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KRI1 36
  • 96.54 (n)
  • 95.59 (a)
KRI1 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia KRI1 36
  • 86.64 (n)
  • 87.73 (a)
KRI1 37
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KRI1 36
  • 85.77 (n)
  • 87.25 (a)
KRI1 37
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Kri1 36
  • 80.41 (n)
  • 83.21 (a)
Kri1 16
Kri1 37
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia KRI1 37
  • 62 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KRI1 37
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC687183 36
  • 80.95 (n)
  • 85.07 (a)
lizard
(Anolis carolinensis)
Reptilia KRI1 37
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia kri1 36
  • 64.26 (n)
  • 62.15 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.20345 36
kri1 36
  • 62.04 (n)
  • 58.64 (a)
kri1 37
  • 50 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007295 36
  • 54.54 (n)
  • 43.37 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG5645 36
  • 55.87 (n)
  • 49.56 (a)
CG5645 37
  • 34 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F54C9.9 36
  • 46.57 (n)
  • 40.19 (a)
F54C9.9 37
  • 34 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes KRI1 37
  • 26 (a)
OneToOne
KRI1 39
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3549 37
  • 43 (a)
OneToOne
Species with no ortholog for KRI1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for KRI1 Gene

ENSEMBL:
Gene Tree for KRI1 (if available)
TreeFam:
Gene Tree for KRI1 (if available)

Paralogs for KRI1 Gene

No data available for Paralogs for KRI1 Gene

Variants for KRI1 Gene

Sequence variations from dbSNP and Humsavar for KRI1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs875569 -- 10,558,277(+) CACTC(A/G)AGACA intron-variant
rs892084 -- 10,558,356(-) GCTGT(A/G)GGGAG intron-variant
rs1560688 -- 10,555,992(-) tcccc(C/T)atctg intron-variant
rs1982074 - 10,557,997(-) GGAGC(C/T)GCACT missense, reference
rs2002538 -- 10,559,148(-) GTATG(C/T)TTGTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KRI1 Gene

Variant ID Type Subtype PubMed ID
dgv3725n71 CNV Loss 21882294
nsv833744 CNV Loss 17160897
nsv911042 CNV Loss 21882294
dgv3727n71 CNV Loss 21882294
nsv833745 CNV Loss 17160897
nsv911045 CNV Loss 21882294
nsv911046 CNV Loss 21882294
nsv911047 CNV Loss 21882294

Relevant External Links for KRI1 Gene

HapMap Linkage Disequilibrium report
KRI1

Disorders for KRI1 Gene

(1) MalaCards Diseases for KRI1 Gene

Search for KRI1 Gene in MalaCards »

(1) University of Copenhagen DISEASES for KRI1 Gene

Relevant External Links for KRI1

Genetic Association Database (GAD)
KRI1
Human Genome Epidemiology (HuGE) Navigator
KRI1
genes like me logo Genes that share disorders with KRI1: view

No data available for UniProtKB/Swiss-Prot for KRI1 Gene

Publications for KRI1 Gene

  1. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 3 49
  2. Redifferentiation of dedifferentiated chondrocytes and chondrogenesis of human bone marrow stromal cells via chondrosphere formation with expression profiling by large-scale cDNA analysis. (PMID: 12878157) Imabayashi H. … Umezawa A. (Exp. Cell Res. 2003) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for KRI1 Gene

Sources for KRI1 Gene

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