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Aliases for KRBOX1-AS1 Gene

Subcategory (RNA class) for KRBOX1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KRBOX1-AS1 Gene

  • KRBOX1 Antisense RNA 1 2 3 5
  • KRBOX1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for KRBOX1-AS1 Gene

Summaries for KRBOX1-AS1 Gene

GeneCards Summary for KRBOX1-AS1 Gene

KRBOX1-AS1 (KRBOX1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRBOX1-AS1 Gene

Genomics for KRBOX1-AS1 Gene

Regulatory Elements for KRBOX1-AS1 Gene

Enhancers for KRBOX1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G042899 0.8 ENCODE 10.4 +35.5 35519 2.9 HDAC1 PKNOX1 ESRRA TAL1 ZNF175 PYGO2 ZNF644 FOSL1 TCF12 CTBP1 KRBOX1-AS1 ZNF662 GC03M042884
GH03G042905 0.6 ENCODE 0.3 +30.4 30445 1.2 PHF8 L3MBTL2 NR4A1 ZFX MGA YY1 EZH2 ZNF662 KRBOX1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KRBOX1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KRBOX1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000151430 284 999 ATF1 L3MBTL2 ZBTB40 GABPA NR2C1 CREM NR2C2 MGA EZH2

Genomic Location for KRBOX1-AS1 Gene

Chromosome:
3
Start:
42,934,244 bp from pter
End:
42,936,785 bp from pter
Size:
2,542 bases
Orientation:
Minus strand

Genomic View for KRBOX1-AS1 Gene

Genes around KRBOX1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KRBOX1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KRBOX1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRBOX1-AS1 Gene

Proteins for KRBOX1-AS1 Gene

Post-translational modifications for KRBOX1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KRBOX1-AS1 Gene

Domains & Families for KRBOX1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KRBOX1-AS1 Gene

Function for KRBOX1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KRBOX1-AS1 Gene

Localization for KRBOX1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KRBOX1-AS1 Gene

Pathways & Interactions for KRBOX1-AS1 Gene

SuperPathways for KRBOX1-AS1 Gene

No Data Available

Interacting Proteins for KRBOX1-AS1 Gene

Gene Ontology (GO) - Biological Process for KRBOX1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KRBOX1-AS1 Gene

Drugs & Compounds for KRBOX1-AS1 Gene

No Compound Related Data Available

Transcripts for KRBOX1-AS1 Gene

mRNA/cDNA for KRBOX1-AS1 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRBOX1-AS1 Gene

KRBOX1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KRBOX1-AS1 Gene

No ASD Table

Relevant External Links for KRBOX1-AS1 Gene

GeneLoc Exon Structure for
KRBOX1-AS1
ECgene alternative splicing isoforms for
KRBOX1-AS1

Expression for KRBOX1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KRBOX1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KRBOX1-AS1 Gene

This gene is overexpressed in Testis (x36.3).

SOURCE GeneReport for Unigene cluster for KRBOX1-AS1 Gene:

Hs.517918
genes like me logo Genes that share expression patterns with KRBOX1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KRBOX1-AS1 Gene

Orthologs for KRBOX1-AS1 Gene

Evolution for KRBOX1-AS1 Gene

ENSEMBL:
Gene Tree for KRBOX1-AS1 (if available)
TreeFam:
Gene Tree for KRBOX1-AS1 (if available)

No data available for Orthologs for KRBOX1-AS1 Gene

Paralogs for KRBOX1-AS1 Gene

No data available for Paralogs for KRBOX1-AS1 Gene

Variants for KRBOX1-AS1 Gene

Sequence variations from dbSNP and Humsavar for KRBOX1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000169940 -- 42,938,206(+) GGATT(A/C)TTTTA intron-variant, upstream-variant-2KB
rs1001051662 -- 42,935,144(+) TTACA(A/G)CCATC nc-transcript-variant, upstream-variant-2KB
rs1001626683 -- 42,937,821(+) TGGAG(-/GGA)GGAGG intron-variant, upstream-variant-2KB
rs1002729335 -- 42,936,748(+) CATGC(C/G)CCTCG intron-variant, nc-transcript-variant
rs1002912043 -- 42,938,205(+) TGGAT(C/T)CTTTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KRBOX1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv590149 CNV gain 21841781

Relevant External Links for KRBOX1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KRBOX1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KRBOX1-AS1 Gene

Disorders for KRBOX1-AS1 Gene

Relevant External Links for KRBOX1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KRBOX1-AS1

No disorders were found for KRBOX1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KRBOX1-AS1 Gene

Publications for KRBOX1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for KRBOX1-AS1 Gene

Sources for KRBOX1-AS1 Gene

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