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Aliases for KRBOX1 Gene

Aliases for KRBOX1 Gene

  • KRAB Box Domain Containing 1 2 3

External Ids for KRBOX1 Gene

Summaries for KRBOX1 Gene

GeneCards Summary for KRBOX1 Gene

KRBOX1 (KRAB Box Domain Containing 1) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ENSG00000273291.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KRBOX1 Gene

Genomics for KRBOX1 Gene

Genomic Location for KRBOX1 Gene

Start:
42,809,483 bp from pter
End:
42,942,792 bp from pter
Size:
133,310 bases
Orientation:
Plus strand

Genomic View for KRBOX1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KRBOX1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KRBOX1 Gene

No data available for Regulatory Elements for KRBOX1 Gene

Proteins for KRBOX1 Gene

  • Protein details for KRBOX1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    C9JBD0-KRBX1_HUMAN
    Recommended name:
    KRAB domain-containing protein 1
    Protein Accession:
    C9JBD0
    Secondary Accessions:
    • B4DJE8

    Protein attributes for KRBOX1 Gene

    Size:
    128 amino acids
    Molecular mass:
    14906 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for KRBOX1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for KRBOX1 Gene

Proteomics data for KRBOX1 Gene at MOPED

Post-translational modifications for KRBOX1 Gene

No Post-translational modifications

Other Protein References for KRBOX1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KRBOX1 Gene

Domains for KRBOX1 Gene

Protein Domains for KRBOX1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

KRBX1_HUMAN
Domain:
  • Contains 1 KRAB domain.:
    • C9JBD0
genes like me logo Genes that share domains with KRBOX1: view

No data available for Gene Families for KRBOX1 Gene

Function for KRBOX1 Gene

Gene Ontology (GO) - Molecular Function for KRBOX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
genes like me logo Genes that share ontologies with KRBOX1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for KRBOX1 Gene

Localization for KRBOX1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KRBOX1 Gene COMPARTMENTS Subcellular localization image for KRBOX1 gene
Compartment Confidence
extracellular 2
cytosol 1
nucleus 1

Gene Ontology (GO) - Cellular Components for KRBOX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with KRBOX1: view

Pathways for KRBOX1 Gene

SuperPathways for KRBOX1 Gene

No Data Available

Interacting Proteins for KRBOX1 Gene

Gene Ontology (GO) - Biological Process for KRBOX1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with KRBOX1: view

No data available for Pathways by source for KRBOX1 Gene

Transcripts for KRBOX1 Gene

mRNA/cDNA for KRBOX1 Gene

(2) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KRBOX1 Gene

KRAB box domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KRBOX1 Gene

No ASD Table

Relevant External Links for KRBOX1 Gene

GeneLoc Exon Structure for
KRBOX1
ECgene alternative splicing isoforms for
KRBOX1

Expression for KRBOX1 Gene

mRNA expression in normal human tissues for KRBOX1 Gene

mRNA differential expression in normal tissues according to GTEx for KRBOX1 Gene

This gene is overexpressed in Testis (24.2).

SOURCE GeneReport for Unigene cluster for KRBOX1 Gene Hs.720172

genes like me logo Genes that share expressions with KRBOX1: view

Orthologs for KRBOX1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for KRBOX1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 100 (a)
OneToMany
KRBOX1 36
  • 99.74 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia -- 37
  • 29 (a)
ManyToMany
-- 37
  • 29 (a)
ManyToMany
ZNF266 37
  • 26 (a)
ManyToMany
ZNF8 37
  • 31 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 30 (a)
ManyToMany
-- 37
  • 32 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 41 (a)
ManyToMany
-- 37
  • 34 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 12 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 37
  • 6 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 43 (a)
OneToMany
Species with no ortholog for KRBOX1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for KRBOX1 Gene

ENSEMBL:
Gene Tree for KRBOX1 (if available)
TreeFam:
Gene Tree for KRBOX1 (if available)

Paralogs for KRBOX1 Gene

Paralogs for KRBOX1 Gene

Pseudogenes.org Pseudogenes for KRBOX1 Gene

genes like me logo Genes that share paralogs with KRBOX1: view

Variants for KRBOX1 Gene

Sequence variations from dbSNP and Humsavar for KRBOX1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs14694 -- 42,942,700(-) TTAAG(A/G)TGGCT utr-variant-3-prime
rs14695 -- 42,942,726(-) AAAAG(A/G)AAATG utr-variant-3-prime
rs704889 -- 42,940,774(+) AAGAA(A/C)GAAGG intron-variant
rs834585 -- 42,939,556(+) tgctt(A/C)tttct intron-variant
rs17074925 -- 42,940,666(+) CCTGC(A/G)TTTCT intron-variant

Relevant External Links for KRBOX1 Gene

HapMap Linkage Disequilibrium report
KRBOX1

No data available for Structural Variations from Database of Genomic Variants (DGV) for KRBOX1 Gene

Disorders for KRBOX1 Gene

No disorders were found for KRBOX1 Gene.

No data available for UniProtKB/Swiss-Prot for KRBOX1 Gene

Publications for KRBOX1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for KRBOX1 Gene

Sources for KRBOX1 Gene

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