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KRBA2 Gene

protein-coding   GIFtS: 43
GCID: GC17M008271

KRAB-A Domain Containing 2

(Previous name: KRAB A domain containing 2)
  Search for KRBA2
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
KRAB-A Domain Containing 21 2
KRAB A Domain Containing 21 2
KRAB-A Domain-Containing Protein 22

External Ids:    HGNC: 269891   Entrez Gene: 1247512   Ensembl: ENSG000001846197   UniProtKB: Q6ZNG93   

Export aliases for KRBA2 gene to outside databases

Previous GC identifers: GC17M008213 GC17M008166


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for KRBA2 Gene:
KRBA2 (KRAB-A domain containing 2) is a protein-coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is ZBED5.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000017.11  NT_010718.17  NC_018928.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the KRBA2 gene promoter:
         HOXA3   AML1a   GCNF   GATA-1   C/EBPalpha   AREB6   Nkx6-1   GCNF-1   COMP1   IRF-7A   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKRBA2 promoter sequence
   Search Chromatin IP Primers for KRBA2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat KRBA2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.1   Ensembl cytogenetic band:  17p13.1   HGNC cytogenetic band: 17p13.1

KRBA2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KRBA2 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M008271:  view genomic region     (about GC identifiers)

Start:
8,271,955 bp from pter      End:
8,280,029 bp from pter
Size:
8,075 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: KRBA2_HUMAN, Q6ZNG9 (See protein sequence)
Recommended Name: KRAB-A domain-containing protein 2  
Size: 492 amino acids; 56205 Da
Caution: It is uncertain whether Met-1 or Met-46 is the initiator
Secondary accessions: Q8IYY0

Explore the universe of human proteins at neXtProt for KRBA2: NX_Q6ZNG9

Explore proteomics data for KRBA2 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See KRBA2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_998762.1  
    ENSEMBL proteins: 
     ENSP00000379565   ENSP00000328017  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR001909 Krueppel-associated_box
     IPR001584 Integrase_cat-core
     IPR012337 RNaseH-like_dom

    Graphical View of Domain Structure for InterPro Entry Q6ZNG9

    ProtoNet protein and cluster: Q6ZNG9

    1 Blocks protein domain: IPB001909 KRAB box

    UniProtKB/Swiss-Prot: KRBA2_HUMAN, Q6ZNG9
    Similarity: Contains 1 integrase catalytic domain
    Similarity: Contains 1 KRAB domain


    KRBA2 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
         
    KRBA2 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for KRBA2:
     Increased G1 DNA content 

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    1 qRT-PCR Assays for microRNA that regulate KRBA2:
    hsa-miR-4277
    SwitchGear 3'UTR luciferase reporter plasmidKRBA2 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    endoplasmic reticulum2
    cytoskeleton1
    cytosol1
    extracellular1
    mitochondrion1
    nucleus1
    peroxisome1
    plasma membrane1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular IEA--

    KRBA2 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for KRBA2
    Interactions:

        Search GeneGlobe Interaction Network for KRBA2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for KRBA2 (ENSP000003280174) via UniProtKB, MINT, STRING, and/or I2D (see all 34)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SIRT1ENSP000002120154STRING: ENSP00000212015
    DMTF1ENSP000003321714STRING: ENSP00000332171
    DNA2ENSP000003821334STRING: ENSP00000382133
    SMC2ENSP000002863984STRING: ENSP00000286398
    CDC14AENSP000003549164STRING: ENSP00000354916
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006355regulation of transcription, DNA-templated IEA--
    GO:0015074DNA integration IEA--

    KRBA2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for KRBA2



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for KRBA2 gene: 
    NM_213597.2  

    Unigene Cluster for KRBA2:

    KRAB-A domain containing 2
    Hs.304604  [show with all ESTs]
    Unigene Representative Sequence: BC024723
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000396267(uc002glg.1) ENST00000331336(uc002glf.1)
    miRNA
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    1 qRT-PCR Assays for microRNA that regulate KRBA2:
    hsa-miR-4277
    SwitchGear 3'UTR luciferase reporter plasmidKRBA2 3' UTR sequence
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat KRBA2

    Additional mRNA sequence: 

    AK131219.1 BC024723.1 BC033390.1 

    3 DOTS entries:

    DT.91725772  DT.75120601  DT.100741526 

    17 AceView cDNA sequences:

    BX284082 BU177845 BC033390 BG619408 AK131219 BQ680160 NM_213597 BC024723 
    AA677553 BE886122 BI759933 BG680823 AW890351 BG820731 AI077561 BE176836 
    BI054039 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    KRBA2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAGTCCTTG
    KRBA2 Expression
    About this image

    KRBA2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    KRBA2 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.304604
        Custom PCR Arrays for KRBA2
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KRBA2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for KRBA2 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    (see all 5)
    Uncharacterized protein
    (see all 5)
    1(a)
    1(a)
    (see all 5)
    many ↔ many
    many ↔ many
    (see all 5)
    2(196730213-196731991)
    1(182067913-182069628)
    zebrafish
    (Danio rerio)
    Actinopterygii KRBA26
    KRAB-A domain containing 2
    1(a)
    1 ↔ 1
    6(17293919-17295680) ENSDARG00000091390
            Species with no ortholog for KRBA2

    ENSEMBL Gene Tree for KRBA2 (if available)
    TreeFam Gene Tree for KRBA2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for KRBA2 gene
    ZBED52  C5orf542  SCAND32  GTF2IRD22  FAM200A2  FAM200B2  EPM2AIP12  GTF2IRD2B2  
    2 SIMAP similar genes for KRBA2 using alignment to 3 protein entries:     KRBA2_HUMAN (see all proteins):
    RPL26L1    RPL26

    KRBA2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for KRBA2 (see all 138)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1860453551,2
    --8260329(+) TATTCA/GCTGAT 1 -- ds50010--------
    rs1893242561,2
    --8260354(+) GATCTC/TGAGAT 1 -- ds50010--------
    rs568420411,2
    C,F--8260482(+) GTTGTA/GTATGG 1 -- ds50012Minor allele frequency- G:0.06WA EA 238
    rs1808099651,2
    C--8260515(+) AAGTTC/TGGGTC 1 -- ds50010--------
    rs614318711,2
    C,F--8260627(+) CAAGGA/CCTGCC 1 -- ds50011Minor allele frequency- C:0.07WA 118
    rs557281961,2
    C,F--8260642(+) ATTGCC/TGATGG 1 -- ds50014Minor allele frequency- T:0.16WA NA 242
    rs1863870361,2
    --8260991(+) TTCATC/TATGTT 1 -- ut310--------
    rs1908889541,2
    --8261035(+) GACCCA/GCCCAC 1 -- ut310--------
    rs3730851,2
    C,F,A--8261043(-) aggccG/Aaggtg 1 -- ut3110Minor allele frequency- A:0.15NA WA CSA 20
    rs1458865411,2
    F--8261307(+) AGACCG/AGAAGT 2 /S syn11Minor allele frequency- A:0.00NA 4550

    HapMap Linkage Disequilibrium report for KRBA2 (8271955 - 8280029 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for KRBA2:    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv3057n71CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing KRBA2
    DNA2.0 Custom Variant and Variant Library Synthesis for KRBA2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for KRBA2 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with KRBA2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    2. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)
    3. Genome-scale RNAi screen for host factors required for HIV replication. (PubMed id 18976975)1 Zhou H....Espeseth A.S. (amp 2008)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 124751 HGNC: 26989 AceView: LOC124751 Ensembl:ENSG00000184619 euGenes: HUgn124751
    ECgene: KRBA2 H-InvDB: KRBA2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for KRBA2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for KRBA2 gene:
    Search GeneIP for patents involving KRBA2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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