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Aliases for KNOP1 Gene

Aliases for KNOP1 Gene

  • Lysine Rich Nucleolar Protein 1 2 3 5
  • Family With Sequence Similarity 191, Member A 2 3
  • Testis-Specific Gene 118 Protein 3 4
  • C16orf88 3 4
  • FAM191A 3 4
  • TSG118 3 4
  • Chromosome 16 Open Reading Frame 88 2
  • Lysine-Rich Nucleolar Protein 1 3
  • Testis-Specific Gene 118 2
  • Protein C16orf88 3
  • Protein FAM191A 4
  • 101F10.1 3

External Ids for KNOP1 Gene

Previous HGNC Symbols for KNOP1 Gene

  • C16orf88

Summaries for KNOP1 Gene

GeneCards Summary for KNOP1 Gene

KNOP1 (Lysine Rich Nucleolar Protein 1) is a Protein Coding gene. GO annotations related to this gene include poly(A) RNA binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KNOP1 Gene

Genomics for KNOP1 Gene

Regulatory Elements for KNOP1 Gene

Enhancers for KNOP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F019695 1.5 FANTOM5 Ensembl ENCODE 60.7 +20.0 20041 6.4 HDAC1 ZFP64 ARID4B FEZF1 ZNF48 ZNF2 RARA SCRT2 RCOR1 FOS KNOP1 C16orf62 ENSG00000276571 GC16M019702
GH16F019715 1.1 ENCODE 44 +0.7 683 4.0 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 KNOP1 ITPRIPL2 IQCK
GH16F019709 0.9 ENCODE 50.1 +7.9 7863 1.4 HDAC1 PKNOX1 TBL1XR1 ARNT ZFP64 ZNF335 ZNF766 GATA2 ETV6 ZBTB2 KNOP1 C16orf62 ENSG00000261312 IQCK
GH16F019757 1.3 FANTOM5 Ensembl ENCODE 34.6 -39.9 -39892 0.8 SOX13 ELF3 SAP130 CEBPG DMAP1 RARA TEAD3 CREM GATAD2A SOX5 KNOP1 GPRC5B CCP110 IQCK LOC105371115
GH16F019804 1 Ensembl ENCODE 44.2 -88.8 -88815 6.2 BCOR PKNOX1 JUN MAX ZMYM3 EBF1 FOSL1 ZNF316 ZNF766 RBAK KNOP1 THUMPD1 ACSM5 LARP7P2 LOC105371115
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KNOP1 on UCSC Golden Path with GeneCards custom track

Promoters for KNOP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000504935 161 2801 PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207

Genomic Location for KNOP1 Gene

Chromosome:
16
Start:
19,701,934 bp from pter
End:
19,718,361 bp from pter
Size:
16,428 bases
Orientation:
Minus strand

Genomic View for KNOP1 Gene

Genes around KNOP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KNOP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KNOP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KNOP1 Gene

Proteins for KNOP1 Gene

  • Protein details for KNOP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q1ED39-KNOP1_HUMAN
    Recommended name:
    Lysine-rich nucleolar protein 1
    Protein Accession:
    Q1ED39
    Secondary Accessions:
    • O43328
    • Q5FWF3

    Protein attributes for KNOP1 Gene

    Size:
    458 amino acids
    Molecular mass:
    51589 Da
    Quaternary structure:
    • Interacts with ZNF106.
    SequenceCaution:
    • Sequence=AAC05805.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH89430.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

neXtProt entry for KNOP1 Gene

Post-translational modifications for KNOP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for KNOP1 Gene

Domains & Families for KNOP1 Gene

Protein Domains for KNOP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for KNOP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KNOP1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for KNOP1 Gene

Function for KNOP1 Gene

Gene Ontology (GO) - Molecular Function for KNOP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with KNOP1: view
genes like me logo Genes that share phenotypes with KNOP1: view

Animal Models for KNOP1 Gene

MGI Knock Outs for KNOP1:

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for KNOP1 Gene

Localization for KNOP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for KNOP1 Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for KNOP1 gene
Compartment Confidence
nucleus 5
cytosol 4
plasma membrane 2

Gene Ontology (GO) - Cellular Components for KNOP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with KNOP1: view

Pathways & Interactions for KNOP1 Gene

SuperPathways for KNOP1 Gene

No Data Available

Interacting Proteins for KNOP1 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000219837%0d%0a9606.ENSP00000405965%0d%0a9606.ENSP00000376076%0d%0a
Selected Interacting proteins: Q1ED39-KNOP1_HUMAN ENSP00000219837 for KNOP1 Gene via IID STRING

Gene Ontology (GO) - Biological Process for KNOP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KNOP1 Gene

Transcripts for KNOP1 Gene

Unigene Clusters for KNOP1 Gene

Lysine-rich nucleolar protein 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KNOP1 Gene

No ASD Table

Relevant External Links for KNOP1 Gene

GeneLoc Exon Structure for
KNOP1
ECgene alternative splicing isoforms for
KNOP1

Expression for KNOP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KNOP1 Gene

Protein differential expression in normal tissues from HIPED for KNOP1 Gene

This gene is overexpressed in Lung (54.3) and Fetal ovary (9.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for KNOP1 Gene



Protein tissue co-expression partners for KNOP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of KNOP1 Gene:

KNOP1

SOURCE GeneReport for Unigene cluster for KNOP1 Gene:

Hs.585209
genes like me logo Genes that share expression patterns with KNOP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for KNOP1 Gene

Orthologs for KNOP1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for KNOP1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KNOP1 35
  • 96 (a)
OneToOne
C16H16orf88 34
  • 95.61 (n)
dog
(Canis familiaris)
Mammalia KNOP1 34 35
  • 81.37 (n)
cow
(Bos Taurus)
Mammalia KNOP1 34 35
  • 80.61 (n)
mouse
(Mus musculus)
Mammalia Knop1 34 16 35
  • 72.8 (n)
rat
(Rattus norvegicus)
Mammalia LOC680982 34
  • 66.99 (n)
oppossum
(Monodelphis domestica)
Mammalia KNOP1 35
  • 39 (a)
OneToOne
chicken
(Gallus gallus)
Aves KNOP1 35
  • 47 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KNOP1 35
  • 46 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii knop1 35
  • 25 (a)
OneToOne
Species where no ortholog for KNOP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for KNOP1 Gene

ENSEMBL:
Gene Tree for KNOP1 (if available)
TreeFam:
Gene Tree for KNOP1 (if available)

Paralogs for KNOP1 Gene

genes like me logo Genes that share paralogs with KNOP1: view

No data available for Paralogs for KNOP1 Gene

Variants for KNOP1 Gene

Sequence variations from dbSNP and Humsavar for KNOP1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1016971 -- 19,707,403(-) acaac(A/T)gtgtt intron-variant
rs10664428 -- 19,716,546(+) GGTGA(-/AT)ATATA intron-variant, upstream-variant-2KB
rs111291884 -- 19,719,430(+) AAAAT(-/A)CAAAA intron-variant, upstream-variant-2KB
rs111355075 -- 19,718,399(+) CCCAC(C/T)GTGTC nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon, utr-variant-5-prime
rs111425754 -- 19,708,658(+) CAGAG(C/G)CCAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KNOP1 Gene

Variant ID Type Subtype PubMed ID
nsv952946 CNV deletion 24416366
nsv571582 CNV gain 21841781
nsv436835 CNV insertion 17901297
esv991936 CNV loss 20482838
esv2714055 CNV deletion 23290073

Variation tolerance for KNOP1 Gene

Residual Variation Intolerance Score: 64.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.13; 61.38% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for KNOP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KNOP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KNOP1 Gene

Disorders for KNOP1 Gene

Relevant External Links for KNOP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KNOP1

No disorders were found for KNOP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KNOP1 Gene

Publications for KNOP1 Gene

  1. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus B.J. … Adams M.D. (Genomics 1999) 3 4 64
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  4. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta G.D. … Pelletier L. (Cell 2015) 3 64
  5. SUMO-2 orchestrates chromatin modifiers in response to DNA damage. (PMID: 25772364) Hendriks I.A. … Vertegaal A.C. (Cell Rep. 2015) 4 64

Products for KNOP1 Gene

Sources for KNOP1 Gene

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