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KLRF2 Gene

protein-coding   GIFtS: 27
GCID: GC12P010034

Killer Cell Lectin-Like Receptor Subfamily F, Member 2

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Killer Cell Lectin-Like Receptor Subfamily F, Member 21 2
Activating Coreceptor NKp652 3
Lectin-Like Receptor F22 3
NKp652
Killer Cell Lectin-Like Receptor Subfamily F Member 22

External Ids:    HGNC: 376461   Entrez Gene: 1004311722   Ensembl: ENSG000002567977   UniProtKB: D3W0D13   

Export aliases for KLRF2 gene to outside databases

Previous GC identifers: GC12U901452 GC12P009776


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for KLRF2 Gene:
KLRF2 (killer cell lectin-like receptor subfamily F, member 2) is a protein-coding gene. GO annotations related to this gene include carbohydrate binding and protein homodimerization activity. An important paralog of this gene is CLECL1.

UniProtKB/Swiss-Prot: KLRF2_HUMAN, D3W0D1
Function: C-type lectin-like receptor involved in natural killer cell mediated cytotoxicity and cytokine secretion
in keratinocytes via its interaction with CLEC2A




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for KLRF2
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for KLRF2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat KLRF2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12p13   Ensembl cytogenetic band:  12p13.31   HGNC cytogenetic band: 12p13.31

KLRF2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KLRF2 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12P010034:  view genomic region     (about GC identifiers)

Start:
10,034,088 bp from pter      End:
10,048,432 bp from pter
Size:
14,345 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: KLRF2_HUMAN, D3W0D1 (See protein sequence)
Recommended Name: Killer cell lectin-like receptor subfamily F member 2  
Size: 207 amino acids; 24008 Da
Subunit: Homodimer; non disulfide-linked. Interacts with CLEC2A
1 PDB 3D structure from and Proteopedia for KLRF2:
4IOP (3D)    

Explore the universe of human proteins at neXtProt for KLRF2: NX_D3W0D1

Post-translational modifications: 

  • N-glycosylated1
  • Glycosylation2 at Asn67, Asn202
  • REFSEQ proteins: NP_001177694.1  
    ENSEMBL proteins: 
     ENSP00000438244  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    KLR: Killer cell lectin-like receptors
    CLEC: C-type lectin domain containing

    3 InterPro protein domains:
     IPR016187 C-type_lectin_fold
     IPR016186 C-type_lectin-like
     IPR001304 C-type_lectin

    Graphical View of Domain Structure for InterPro Entry D3W0D1

    ProtoNet protein and cluster: D3W0D1

    UniProtKB/Swiss-Prot: KLRF2_HUMAN, D3W0D1
    Similarity: Contains 1 C-type lectin domain


    Find genes that share domains with KLRF2           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: KLRF2_HUMAN, D3W0D1
    Function: C-type lectin-like receptor involved in natural killer cell mediated cytotoxicity and cytokine secretion
    in keratinocytes via its interaction with CLEC2A

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--
    GO:0030246carbohydrate binding IEA--
    GO:0042803protein homodimerization activity IDA--
         
    Find genes that share ontologies with KLRF2           About GenesLikeMe


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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    KLRF2_HUMAN, D3W0D1: Cell membrane; Single-pass type II membrane protein

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005887integral component of plasma membrane IDA--

    Find genes that share ontologies with KLRF2           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Interactions:

        Search GeneGlobe Interaction Network for KLRF2

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0043320natural killer cell degranulation TAS--
    GO:0050663cytokine secretion TAS--

    Find genes that share ontologies with KLRF2           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for KLRF2 gene: 
    NM_001190765.1  

    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000535540(uc021quy.1)
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    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    See probesets specificity/sensitivity at GeneAnnot
    CGAP TAG: --

    KLRF2 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for KLRF2 gene from Selected species (see all 5)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia KLRF21 killer cell lectin-like receptor subfamily F, member more 78.72(n)
    63.84(a)
      100684347  XM_003433534.1  XP_003433582.1 
    chicken
    (Gallus gallus)
    Aves BLEC26
    Gallus gallus NK receptor-like (B-NK), mRNA.
    19(a)
    1 → many
    16(108301-110805)
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    (see all 3)
    Uncharacterized protein
    (see all 3)
    9(a)
    29(a)
    (see all 3)
    many ↔ many
    many ↔ many
    (see all 3)
    GL343438.1(107492-113029)
    2(193036120-193041758)


    ENSEMBL Gene Tree for KLRF2 (if available)
    TreeFam Gene Tree for KLRF2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for KLRF2 gene
    CLECL12  KLRF12  KLRB12  
    2 SIMAP similar genes for KLRF2 using alignment to 1 protein entry:     KLRF2_HUMAN:
    KLRD1    CLEC2B

    Find genes that share paralogs with KLRF2           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for KLRF2 (see all 368)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1502344571,2
    C--10032111(+) TTTCCG/TGCTTG 1 -- us2k10--------
    rs1925459311,2
    --10032128(+) CAAACA/TGAAAT 1 -- us2k10--------
    rs1850711701,2
    --10032140(+) ACAAGC/TATTTC 1 -- us2k10--------
    rs1905535391,2
    --10032169(+) TGTATG/TTCAGC 1 -- us2k10--------
    rs1818644051,2
    --10032175(+) TCAGCA/TCTCCT 1 -- us2k10--------
    rs1851464811,2
    --10032176(+) CAGCTA/CTCCTG 1 -- us2k10--------
    rs20343391,2
    C,F,A,H--10032180(+) TCTCCT/CGATCT 1 -- us2k114Minor allele frequency- C:0.34NS EA NA WA 780
    rs9355371,2
    C,F,A,H--10032270(+) CAATAG/CATTCA 1 -- us2k130Minor allele frequency- C:0.49NS EA NA WA 3190
    rs1380032381,2
    C--10032477(+) AACAGC/TTCCAA 1 -- us2k10--------
    rs1145347241,2
    F--10032577(+) TGACCC/TGGGTT 1 -- us2k11Minor allele frequency- T:0.01WA 118

    HapMap Linkage Disequilibrium report for KLRF2 (10034088 - 10048432 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for KLRF2:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv523050CNV Loss19592680

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for KLRF2 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with KLRF2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Interaction of C-type lectin-like receptors NKp65 and KACL facilitates dedicated immune recognition of human keratinocytes. (PubMed id 20194751)1, 2, 3 Spreu J....Steinle A. (Proc. Natl. Acad. Sci. U.S.A. 2010)
    2. Structure of NKp65 bound to its keratinocyte ligand reveals basis for genetically linked recognition in natural killer gene complex. (PubMed id 23803857)1, 2 Li Y.... Mariuzza R.A. (Proc. Natl. Acad. Sci. U.S.A. 2013)
    3. The finished DNA sequence of human chromosome 12. (PubMed id 16541075)2 Scherer S.E.... Gibbs R.A. (Nature 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 100431172 HGNC: 37646 Ensembl:ENSG00000256797 euGenes: HUgn100431172 ECgene: KLRF2
    H-InvDB: KLRF2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for KLRF2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for KLRF2 gene:
    Search GeneIP for patents involving KLRF2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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     Browse SwitchGear Promoter luciferase reporter plasmids for KLRF2
     Search ThermoFisher Antibodies for KLRF2
     Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat KLRF2
     inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for KLRF2
     inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for KLRF2
     LSBio Antibodies in human, mouse, rat for KLRF2
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     Search Addgene for plasmids for KLRF2
      Search eBioscience for proteins for KLRF2
      Search eBioscience for elisas for KLRF2
      eBioscience FlowRNA Probe Sets
           
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