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Aliases for KLRF2 Gene

Aliases for KLRF2 Gene

  • Killer Cell Lectin Like Receptor F2 2 3 5
  • Killer Cell Lectin-Like Receptor Subfamily F, Member 2 2 3
  • Activating Coreceptor NKp65 3 4
  • Lectin-Like Receptor F2 3 4
  • Killer Cell Lectin-Like Receptor Subfamily F Member 2 3
  • NKp65 3

External Ids for KLRF2 Gene

Previous GeneCards Identifiers for KLRF2 Gene

  • GC12U901452
  • GC12P009776
  • GC12P010034

Summaries for KLRF2 Gene

GeneCards Summary for KLRF2 Gene

KLRF2 (Killer Cell Lectin Like Receptor F2) is a Protein Coding gene. Diseases associated with KLRF2 include Glaucoma 1, Open Angle, E. GO annotations related to this gene include protein homodimerization activity and carbohydrate binding. An important paralog of this gene is KLRF1.

UniProtKB/Swiss-Prot for KLRF2 Gene

  • C-type lectin-like receptor involved in natural killer cell mediated cytotoxicity and cytokine secretion in keratinocytes via its interaction with CLEC2A.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KLRF2 Gene

Genomics for KLRF2 Gene

Regulatory Elements for KLRF2 Gene

Enhancers for KLRF2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F009605 1.2 FANTOM5 ENCODE 12.5 -274.6 -274590 3.2 HDAC1 PKNOX1 TBL1XR1 BMI1 ZNF143 ETV6 CREM SMAD5 CBFB CEBPB CLEC2D ENSG00000214776 LOC642846 KLRF2 DDX12P LOC374443 LOC101930452 KLRB1 KLRF1 PIR60914
GH12F009756 0.9 FANTOM5 ENCODE 4.5 -120.2 -120211 10.0 HDGF PKNOX1 ATF1 WRNIP1 SIN3A ELK1 GATA2 CBX5 ZNF143 JUNB CD69 KLRF1 CLECL1 CLEC7A KLRK1 OLR1 KLRB1 CLEC12A ENSG00000213443 DDX12P
GH12F009813 1.3 FANTOM5 Ensembl ENCODE 2.2 -67.2 -67232 1.3 CTCF PKNOX1 SUZ12 ZNF76 ZIC2 ZNF2 RAD21 HIC1 ZFHX2 GLIS2 KLRF1 KLRD1 CD69 KLRB1 A2MP1 CLEC2B KLRF2 LOC100419929 LOC105369653
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around KLRF2 on UCSC Golden Path with GeneCards custom track

Genomic Location for KLRF2 Gene

Chromosome:
12
Start:
9,881,489 bp from pter
End:
9,895,833 bp from pter
Size:
14,345 bases
Orientation:
Plus strand

Genomic View for KLRF2 Gene

Genes around KLRF2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KLRF2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KLRF2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KLRF2 Gene

Proteins for KLRF2 Gene

  • Protein details for KLRF2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    D3W0D1-KLRF2_HUMAN
    Recommended name:
    Killer cell lectin-like receptor subfamily F member 2
    Protein Accession:
    D3W0D1

    Protein attributes for KLRF2 Gene

    Size:
    207 amino acids
    Molecular mass:
    24008 Da
    Quaternary structure:
    • Homodimer; non disulfide-linked. Interacts with CLEC2A.

    Three dimensional structures from OCA and Proteopedia for KLRF2 Gene

neXtProt entry for KLRF2 Gene

Post-translational modifications for KLRF2 Gene

Other Protein References for KLRF2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KLRF2 Gene

Domains & Families for KLRF2 Gene

Protein Domains for KLRF2 Gene

Suggested Antigen Peptide Sequences for KLRF2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

D3W0D1

UniProtKB/Swiss-Prot:

KLRF2_HUMAN :
  • Contains 1 C-type lectin domain.
Domain:
  • Contains 1 C-type lectin domain.
genes like me logo Genes that share domains with KLRF2: view

Function for KLRF2 Gene

Molecular function for KLRF2 Gene

UniProtKB/Swiss-Prot Function:
C-type lectin-like receptor involved in natural killer cell mediated cytotoxicity and cytokine secretion in keratinocytes via its interaction with CLEC2A.

Gene Ontology (GO) - Molecular Function for KLRF2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 20194751
GO:0030246 carbohydrate binding IEA --
GO:0042803 protein homodimerization activity IDA 20194751
genes like me logo Genes that share ontologies with KLRF2: view

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KLRF2 Gene

Localization for KLRF2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for KLRF2 Gene

Cell membrane; Single-pass type II membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KLRF2 Gene COMPARTMENTS Subcellular localization image for KLRF2 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for KLRF2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0005887 integral component of plasma membrane IDA 20194751
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with KLRF2: view

Pathways & Interactions for KLRF2 Gene

SuperPathways for KLRF2 Gene

No Data Available

Interacting Proteins for KLRF2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000438244%0d%0a9606.ENSP00000396163%0d%0a
Selected Interacting proteins: ENSP00000438244 D3W0D1-KLRF2_HUMAN for KLRF2 Gene via STRING IID

Gene Ontology (GO) - Biological Process for KLRF2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043320 natural killer cell degranulation TAS 20194751
GO:0050663 cytokine secretion TAS 20194751
genes like me logo Genes that share ontologies with KLRF2: view

No data available for Pathways by source and SIGNOR curated interactions for KLRF2 Gene

Transcripts for KLRF2 Gene

mRNA/cDNA for KLRF2 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KLRF2 Gene

No ASD Table

Relevant External Links for KLRF2 Gene

GeneLoc Exon Structure for
KLRF2
ECgene alternative splicing isoforms for
KLRF2

Expression for KLRF2 Gene

mRNA expression in normal human tissues for KLRF2 Gene

mRNA differential expression in normal tissues according to GTEx for KLRF2 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x24.2) and Skin - Not Sun Exposed (Suprapubic) (x18.6).

NURSA nuclear receptor signaling pathways regulating expression of KLRF2 Gene:

KLRF2

SOURCE GeneReport for Unigene cluster for KLRF2 Gene:

Hs.725113
genes like me logo Genes that share expression patterns with KLRF2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KLRF2 Gene

Orthologs for KLRF2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for KLRF2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KLRF2 34 35
  • 97.75 (n)
cow
(Bos Taurus)
Mammalia KLRF2 34 35
  • 79.46 (n)
dog
(Canis familiaris)
Mammalia KLRF2 34
  • 78.72 (n)
chicken
(Gallus gallus)
Aves BLEC2 35
  • 19 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 29 (a)
ManyToMany
-- 35
  • 25 (a)
ManyToMany
-- 35
  • 9 (a)
ManyToMany
Species where no ortholog for KLRF2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for KLRF2 Gene

ENSEMBL:
Gene Tree for KLRF2 (if available)
TreeFam:
Gene Tree for KLRF2 (if available)

Paralogs for KLRF2 Gene

Paralogs for KLRF2 Gene

(2) SIMAP similar genes for KLRF2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with KLRF2: view

Variants for KLRF2 Gene

Sequence variations from dbSNP and Humsavar for KLRF2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10047538 -- 9,889,670(+) tatat(A/G)tatat intron-variant
rs10047667 -- 9,889,668(+) tatat(A/G)TGtat intron-variant
rs10505739 -- 9,890,919(+) CTCTA(A/C)TAGTC intron-variant
rs10505740 -- 9,893,180(+) AATCA(A/G)AAACA intron-variant
rs10543885 -- 9,892,218(+) GAAAA(-/AGTT)AGCGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KLRF2 Gene

Variant ID Type Subtype PubMed ID
nsv1044587 CNV loss 25217958
nsv1051530 CNV gain 25217958
nsv523050 CNV loss 19592680

Variation tolerance for KLRF2 Gene

Gene Damage Index Score: 1.91; 35.56% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for KLRF2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KLRF2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KLRF2 Gene

Disorders for KLRF2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for KLRF2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
glaucoma 1, open angle, e
  • primary open angle glaucoma
- elite association - COSMIC cancer census association via MalaCards
Search KLRF2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for KLRF2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KLRF2
genes like me logo Genes that share disorders with KLRF2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for KLRF2 Gene

Publications for KLRF2 Gene

  1. Interaction of C-type lectin-like receptors NKp65 and KACL facilitates dedicated immune recognition of human keratinocytes. (PMID: 20194751) Spreu J. … Steinle A. (Proc. Natl. Acad. Sci. U.S.A. 2010) 2 3 4 64
  2. Structure of NKp65 bound to its keratinocyte ligand reveals basis for genetically linked recognition in natural killer gene complex. (PMID: 23803857) Li Y. … Mariuzza R.A. (Proc. Natl. Acad. Sci. U.S.A. 2013) 3 4 64
  3. Key residues at the membrane-distal surface of KACL, but not glycosylation, determine the functional interaction of the keratinocyte-specific C-type lectin-like receptor KACL with its high-affinity receptor NKp65. (PMID: 25510854) Bauer B. … Steinle A. (Immunology 2015) 3 64
  4. The finished DNA sequence of human chromosome 12. (PMID: 16541075) Scherer S.E. … Gibbs R.A. (Nature 2006) 4 64

Products for KLRF2 Gene

Sources for KLRF2 Gene

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