KLRC3 Gene
protein-coding GIFtS: 57
GCID: GC12M010564
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killer cell lectin-like receptor subfamily C, member 3
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Aliases
for KLRC3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Killer Cell Lectin-Like Receptor Subfamily C, Member 31 2 | | NKG2E2 3 5 | | NKG2-E1 2 | | NK Cell Receptor E2 3 | | NKG2-E-Activating NK Receptor2 3 | | NKG2-E Type II Integral Membrane Protein2 |
Export aliases for KLRC3 gene to outside databasesPrevious GC identifers: GC12U990043 GC12M010687 GC12M010465 GC12M010456 GC12M010307 |
Summaries
for KLRC3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for KLRC3:
Natural killer (NK) cells are lymphocytes that can mediate lysis of certain tumor cells and virus-infected cellswithout previous activation. They can also regulate specific humoral and cell-mediated immunity. NK cellspreferentially express several calcium-dependent (C-type) lectins, which have been implicated in the regulation of NKcell function. KLRC3 is a member of the NKG2 group which are expressed primarily in natural killer (NK) cells andencodes a family of transmembrane proteins characterized by a type II membrane orientation (extracellular C terminus)and the presence of a C-type lectin domain. The NKG2 gene family is located within the NK complex, a region thatcontains several C-type lectin genes preferentially expressed on NK cells. Alternative splicing results in multipletranscript variants encoding different isoforms. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: NKG2E_HUMAN, Q07444Function: Plays a role as a receptor for the recognition of MHC class I HLA-E molecules by NK cells and some cytotoxicT-cells
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Genomic Views
for KLRC3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000012.11 NC_018923.1 NT_009714.17
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the KLRC3 gene promoter:
c-Fos AP-1 ATF-2 c-Jun
Other transcription factors
Search SABiosciences Chromatin IP Primers for KLRC3
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat KLRC3 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 12p13 Ensembl cytogenetic band: 12p13.2 HGNC cytogenetic band: 12p13KLRC3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12M010564: view genomic region
(about GC identifiers)
Start:
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10,564,911 bp from pter |
End:
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10,573,194 bp from pter |
Size:
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8,284 bases |
Orientation:
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minus strand |
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Proteins
for KLRC3 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: NKG2E_HUMAN, Q07444 (See
protein sequence)Recommended Name: NKG2-E type II integral membrane protein Size: 240 amino acids; 27100 Da
Subunit: Can form disulfide-bonded heterodimer with CD94
Subcellular location: Membrane; Single-pass type II membrane protein
Secondary accessions: Q8WXA4 Q96RL0 Q9UP04Alternative splicing: 2 isoforms: Q07444-1 Q07444-2 Explore the universe of human proteins at neXtProt for KLRC3: NX_Q07444
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q07444
KLRC3 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_002252.2 NP_031359.2
ENSEMBL proteins: ENSP00000379716 ENSP00000371328 ENSP00000371329
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016021 | integral to membrane |
IEA | -- |
KLRC3 for ontologies About GeneDecksing
KLRC3 Antibody Products:
Assay Products for KLRC3: |
Protein
Domains /
Families
for KLRC3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
KLRC3 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q07444ProtoNet protein and cluster: Q07444 UniProtKB/Swiss-Prot: NKG2E_HUMAN, Q07444Similarity: Contains 1 C-type lectin domain |
Function
for KLRC3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: NKG2E_HUMAN, Q07444Function: Plays a role as a receptor for the recognition of MHC class I HLA-E molecules by NK cells and some cytotoxicT-cells Genatlas biochemistry entry for KLRC3:natural killer cell lectin-like receptor subfamily C,member 3
Clone
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Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004888 | transmembrane signaling receptor activity |
TAS | 9683661 | | GO:0030246 | carbohydrate binding |
IEA | -- |
KLRC3 for ontologies About GeneDecksing
2 GenomeRNAi human phenotypes for KLRC3:
|
Pathways & Interactions
for KLRC3 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Immune response CD16 signaling in NK cells | | | 2 | Natural killer cell mediated cytotoxicity | | | 3 | Allograft rejection | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 EMD Millipore Pathway for KLRC3
1  GeneGo (Thomson Reuters) Pathway for KLRC3
2 
Kegg Pathways (Kegg details for KLRC3):
KLRC3 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for KLRC3
STRING Interaction
Network Preview (showing 5 interactants - click image to see 7)
5/7 Interacting proteins for KLRC3 (Q074443 ENSP000003713284) via UniProtKB, MINT, STRING, and/or I2D (see all 7)About this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006968 | cellular defense response |
TAS | 9683661 |
KLRC3 for ontologies About GeneDecksing
|
Drugs & Compounds
for KLRC3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for KLRC3
Search CenterWatch for drugs/clinical trials and news about KLRC3 / NKG2E
|
Transcripts
for KLRC3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for KLRC3 gene (2 alternative transcripts): NM_002261.2 NM_007333.2 Unigene Cluster for KLRC3: Killer cell lectin-like receptor subfamily C, member 3 Hs.654362 [show with all ESTs]Unigene Representative Sequence: NM_0022613 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000396439(uc001qyf.3 uc021qvc.1) ENST00000381903(uc001qyi.1 uc021qvd.1)
ENST00000381904
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for KLRC3 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for KLRC3 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): KLRC3 (NM_007333) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for KLRC3 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KLRC3 |
Additional cDNA sequence: AF078550.1 AF350016.1 AF350017.1 AK307860.1 AK311162.1 L14542.1 5 DOTS entries: DT.95373143 DT.452120 DT.121197032 DT.121197040 DT.75132896 24/84 AceView cDNA sequences (see all 84): BM456777 AF439512 AF260135 CB241686 CR607215 AA361092 CB216677 BC017784 CR597595 U96845 BQ439342 BI765191 BG392353 BQ212511 BI253358 BE208303 AF350019 AF461811 BI909601 AA766117 BE543391 BG485675 X54870 BQ708055
GeneLoc Exon Structure
|
Expression
for KLRC3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| KLRC3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TACCATTTAG
About this image
See KLRC3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for KLRC3
SOURCE GeneReport for Unigene cluster: Hs.654362
UniProtKB/Swiss-Prot: NKG2E_HUMAN, Q07444Tissue specificity: Natural killer cells
SABiosciences Custom PCR Arrays for KLRC3
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for KLRC3
Browse OriGene validated miRNA SYBR primer pairs
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Orthologs
for KLRC3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for KLRC3 gene from 1/4 species (see all 4) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
lizard
(Anolis carolinensis) |
Reptilia |
CLEC9A6 |
-- |
27(a) |
1 → many |
2(81818136-81823316) |
ENSEMBL Gene Tree for KLRC3 (if available)
TreeFam Gene Tree for KLRC3 (if available) |
Paralogs
for KLRC3 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for KLRC3 gene
- OLR12 CLEC9A2 KLRC22 ENSG000002558192 CLEC12A2 CLEC1A2 KLRD12 KLRK12
- KLRC42 CLEC1B2 ENSG000002556412 CLEC7A2 KLRC12 CLEC12B2
8 SIMAP similar genes for KLRC3 using alignment to 2 protein entries: NKG2E_HUMAN (see all proteins):NKG2-E KLRC2 KLRC1 KLRC4 KLRK1 FCER2
REG1A KLRD1
KLRC3 for paralogs About GeneDecksing
|
Genomic Variants
for KLRC3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 12 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for KLRC3 (10564911 - 10573194 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 10 variations for KLRC3
10 CNVs: 31857 86209 23207 35038 43682 66137 6959 35037 86208 35036 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing KLRC3 |
|
Disorders
/ Diseases
for KLRC3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
KLRC3 for disorders About GeneDecksing
OMIM gene information: 602892
OMIM disorders: --
1  disease for KLRC3: About MalaCardsmonkeypox
1 disease from the University of Copenhagen DISEASES database for KLRC3:Monkeypox Export disorders for KLRC3 gene to outside databases
|
Publications
for KLRC3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for KLRC3 gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with KLRC3) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Conservation and variation in human and common chimpanzee CD94 and NKG2 genes. (PubMed id 11751968)1, 2, 9 Shum B.P.... Parham P. (2002)
- Triggering of effector functions on a CD8+ T cell clone upon the aggregation of an activatory CD94/kp39 heterodimer. (PubMed id 10201920)1, 2, 9 Bellon T.... Aparicio P. (1999)
- The genomic organization of NKG2C, E, F, and D receptor genes in the human natural killer gene complex. (PubMed id 9683661)1, 2 Glienke J.... Francis F. (1998)
- Sequence analysis of a 62-kb region overlapping the human KLRC cluster of genes. (PubMed id 9598306)1, 3 Plougastel B. and Trowsdale J. (1998)
- Natural killer lectin-like receptors have divergent carboxy-termini, distinct from C-type lectins. (PubMed id 8276468)1, 2 Adamkiewicz T.V.... Houchins J.P. (1994)
- The finished DNA sequence of human chromosome 12. (PubMed id 16541075)2 Scherer S.E.... Gibbs R.A. (2006)
- Human natural killer cell receptors involved in MHC class I recognition are disulfide-linked heterodimers of CD94 and NKG2 subunits. (PubMed id 8943374)1 Lazetic S....Phillips J.H. (1996)
- Multiple transcription factor elements collaborate with estrogen receptor alpha to activate an inducible estrogen response element in the NKG2E gene. (PubMed id 17395694)9 Levy N....Leitman D.C. (2007)
- Interactions between NKG2x immunoreceptors and HLA-E ligands display overlapping affinities and thermodynamics. (PubMed id 15728498)9 Kaiser B.K....Strong R.K. (2005)
- CD94 transcripts imply a better prognosis in nasal-type extranodal NK/T-cell lymphoma. (PubMed id 12816864)9 Lin C.W....Hsu S.M. (2003)
|
External Searches for KLRC3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing KLRC3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing KLRC3 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing KLRC3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for KLRC3 | Pharmacogenomics, SNPs, Pathways | | ATLAS Chromosomes in Cancer entry for KLRC3 | Genetics and Cytogenetics in Oncology and Haematology | | Functional Glycomics Gateway - Glycan Binding | http://www.functionalglycomics.org/glycomics/GBPServlet?&operationType=view&cbpId=cbp_hum_Ctlect_247 |
|
| | |
About This Section
| Patent Information for KLRC3 gene:
Search GeneIP for patents involving KLRC3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for KLRC3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat KLRC3 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing KLRC3 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat KLRC3 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat KLRC3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat KLRC3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat KLRC3 |
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