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Aliases for KLRC3 Gene

Aliases for KLRC3 Gene

  • Killer Cell Lectin Like Receptor C3 2 3
  • Killer Cell Lectin-Like Receptor Subfamily C, Member 3 2 3 5
  • NKG2-E-Activating NK Receptor 3 4
  • NK Cell Receptor E 3 4
  • NKG2E 3 4
  • NKG2-E 3

External Ids for KLRC3 Gene

Previous GeneCards Identifiers for KLRC3 Gene

  • GC12U990043
  • GC12M010687
  • GC12M010465
  • GC12M010456
  • GC12M010564
  • GC12M010307
  • GC12M010718

Summaries for KLRC3 Gene

Entrez Gene Summary for KLRC3 Gene

  • Natural killer (NK) cells are lymphocytes that can mediate lysis of certain tumor cells and virus-infected cells without previous activation. They can also regulate specific humoral and cell-mediated immunity. NK cells preferentially express several calcium-dependent (C-type) lectins, which have been implicated in the regulation of NK cell function. KLRC3 is a member of the NKG2 group which are expressed primarily in natural killer (NK) cells and encodes a family of transmembrane proteins characterized by a type II membrane orientation (extracellular C terminus) and the presence of a C-type lectin domain. The NKG2 gene family is located within the NK complex, a region that contains several C-type lectin genes preferentially expressed on NK cells. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for KLRC3 Gene

KLRC3 (Killer Cell Lectin Like Receptor C3) is a Protein Coding gene. Among its related pathways are Immune response Role of DAP12 receptors in NK cells and Allograft rejection. GO annotations related to this gene include transmembrane signaling receptor activity and carbohydrate binding. An important paralog of this gene is KLRC1.

UniProtKB/Swiss-Prot for KLRC3 Gene

  • Plays a role as a receptor for the recognition of MHC class I HLA-E molecules by NK cells and some cytotoxic T-cells.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KLRC3 Gene

Genomics for KLRC3 Gene

Regulatory Elements for KLRC3 Gene

Promoters for KLRC3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around KLRC3 on UCSC Golden Path with GeneCards custom track

Genomic Location for KLRC3 Gene

Chromosome:
12
Start:
10,412,312 bp from pter
End:
10,420,595 bp from pter
Size:
8,284 bases
Orientation:
Minus strand

Genomic View for KLRC3 Gene

Genes around KLRC3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KLRC3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KLRC3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KLRC3 Gene

Proteins for KLRC3 Gene

  • Protein details for KLRC3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q07444-NKG2E_HUMAN
    Recommended name:
    NKG2-E type II integral membrane protein
    Protein Accession:
    Q07444
    Secondary Accessions:
    • Q8WXA4
    • Q96RL0
    • Q9UP04

    Protein attributes for KLRC3 Gene

    Size:
    240 amino acids
    Molecular mass:
    27100 Da
    Quaternary structure:
    • Can form disulfide-bonded heterodimer with CD94.

    Alternative splice isoforms for KLRC3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for KLRC3 Gene

Proteomics data for KLRC3 Gene at MOPED

Post-translational modifications for KLRC3 Gene

  • Glycosylation at Asn 100, Asn 149, and Asn 179
  • Modification sites at PhosphoSitePlus

Other Protein References for KLRC3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KLRC3 Gene

Domains & Families for KLRC3 Gene

Gene Families for KLRC3 Gene

Protein Domains for KLRC3 Gene

Suggested Antigen Peptide Sequences for KLRC3 Gene

Graphical View of Domain Structure for InterPro Entry

Q07444

UniProtKB/Swiss-Prot:

NKG2E_HUMAN :
  • Contains 1 C-type lectin domain.
Domain:
  • Contains 1 C-type lectin domain.
genes like me logo Genes that share domains with KLRC3: view

Function for KLRC3 Gene

Molecular function for KLRC3 Gene

GENATLAS Biochemistry:
natural killer cell lectin-like receptor subfamily C,member 3
UniProtKB/Swiss-Prot Function:
Plays a role as a receptor for the recognition of MHC class I HLA-E molecules by NK cells and some cytotoxic T-cells.
genes like me logo Genes that share phenotypes with KLRC3: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for KLRC3 Gene

Localization for KLRC3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for KLRC3 Gene

Membrane; Single-pass type II membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KLRC3 Gene COMPARTMENTS Subcellular localization image for KLRC3 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
peroxisome 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for KLRC3 Gene

Pathways & Interactions for KLRC3 Gene

genes like me logo Genes that share pathways with KLRC3: view

Pathways by source for KLRC3 Gene

Interacting Proteins for KLRC3 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000371328%0d%0a9606.ENSP00000338130%0d%0a9606.ENSP00000262629%0d%0a
Selected Interacting proteins: Q07444-NKG2E_HUMAN ENSP00000371328 for KLRC3 Gene via I2D STRING

Gene Ontology (GO) - Biological Process for KLRC3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction TAS 9683661
genes like me logo Genes that share ontologies with KLRC3: view

No data available for SIGNOR curated interactions for KLRC3 Gene

Drugs & Compounds for KLRC3 Gene

No Compound Related Data Available

Transcripts for KLRC3 Gene

mRNA/cDNA for KLRC3 Gene

Unigene Clusters for KLRC3 Gene

Killer cell lectin-like receptor subfamily C, member 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KLRC3 Gene

No ASD Table

Relevant External Links for KLRC3 Gene

GeneLoc Exon Structure for
KLRC3
ECgene alternative splicing isoforms for
KLRC3

Expression for KLRC3 Gene

mRNA expression in normal human tissues for KLRC3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for KLRC3 Gene

This gene is overexpressed in Whole Blood (x7.5) and Brain - Amygdala (x4.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for KLRC3 Gene



SOURCE GeneReport for Unigene cluster for KLRC3 Gene Hs.654362

mRNA Expression by UniProt/SwissProt for KLRC3 Gene

Q07444-NKG2E_HUMAN
Tissue specificity: Natural killer cells.
genes like me logo Genes that share expression patterns with KLRC3: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues and Protein tissue co-expression partners for KLRC3 Gene

Orthologs for KLRC3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for KLRC3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KLRC3 35
  • 96.61 (n)
  • 94.69 (a)
KLRC3 36
  • 91 (a)
OneToMany
cow
(Bos Taurus)
Mammalia NKG2A 36
  • 46 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 56 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Klri1 36
  • 23 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 26 (a)
OneToMany
Species with no ortholog for KLRC3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for KLRC3 Gene

ENSEMBL:
Gene Tree for KLRC3 (if available)
TreeFam:
Gene Tree for KLRC3 (if available)

Paralogs for KLRC3 Gene

Paralogs for KLRC3 Gene

(9) SIMAP similar genes for KLRC3 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with KLRC3: view

Variants for KLRC3 Gene

Sequence variations from dbSNP and Humsavar for KLRC3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
VAR_013296 -
rs1138437 - 10,418,425(+) GAAAG(A/T)AGAAC reference, missense
rs2682489 - 10,420,546(-) GATGA(A/G)TAAAC reference, missense
rs2682494 - 10,418,492(-) ACGTC(A/C)TTGTG reference, missense
rs2682495 - 10,418,366(-) GCTTT(C/G)TATAG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for KLRC3 Gene

Variant ID Type Subtype PubMed ID
nsv898757 CNV Gain 21882294
nsv832328 CNV Gain 17160897
nsv898759 CNV Loss 21882294
nsv898763 CNV Loss 21882294
nsv8914 CNV Loss 18304495
dgv1371n71 CNV Loss 21882294
nsv606 CNV Loss 18451855
nsv898767 CNV Loss 21882294
nsv521062 CNV Gain 19592680
esv4003 CNV Deletion 18987735
dgv1372n71 CNV Loss 21882294
nsv898769 CNV Gain 21882294
esv25005 CNV Loss 19812545
dgv263e199 CNV Deletion 23128226
esv2745535 CNV Deletion 23290073
dgv270n67 CNV Loss 20364138
esv32543 CNV Loss 17666407
nsv435631 CNV Deletion 17901297

Variation tolerance for KLRC3 Gene

Residual Variation Intolerance Score: 84.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.85; 67.30% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for KLRC3 Gene

HapMap Linkage Disequilibrium report
KLRC3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KLRC3 Gene

Disorders for KLRC3 Gene

Relevant External Links for KLRC3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KLRC3

No disorders were found for KLRC3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KLRC3 Gene

Publications for KLRC3 Gene

  1. Conservation and variation in human and common chimpanzee CD94 and NKG2 genes. (PMID: 11751968) Shum B.P. … Parham P. (J. Immunol. 2002) 3 4 23 67
  2. Triggering of effector functions on a CD8+ T cell clone upon the aggregation of an activatory CD94/kp39 heterodimer. (PMID: 10201920) Bellon T. … Aparicio P. (J. Immunol. 1999) 3 23
  3. Sequence analysis of a 62-kb region overlapping the human KLRC cluster of genes. (PMID: 9598306) Plougastel B. … Trowsdale J. (Genomics 1998) 2 3
  4. Human NKG2E is expressed and forms an intracytoplasmic complex with CD94 and DAP12. (PMID: 24935923) Orbelyan G.A. … Jabri B. (J. Immunol. 2014) 3
  5. Low gene expression levels of activating receptors of natural killer cells (NKG2E and CD94) in patients with fulminant type 1 diabetes. (PMID: 24177169) Nakata S. … Shimomura I. (Immunol. Lett. 2013) 3

Products for KLRC3 Gene

Sources for KLRC3 Gene

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