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Aliases & Descriptions for KLK4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ARM1 2 | | EC 3.4.21.- 3 | | EMSP 1, 2 | | EMSP1 1, 2, 3, 5 | | KLK-L1 1, 2, 3 | | MGC116827 2 | | MGC116828 2 | | PROSTASE 2 | | PRSS17 2, 3, 5 | | PSTS 1, 2, 3 | | Prostase 3 |
| | | Descriptions |
|---|
| Enamel matrix serine proteinase 1 3 | | Kallikrein-like protein 1 2, 3 | | Serine protease 17 3 | | androgen-regulated message 1 2 | | enamel matrix serine protease 1 2 | | kallikrein 4 (prostase, enamel matrix, prostate) 1, 2 | | kallikrein-related peptidase 4 2 | | protease, serine, 17 2 |
|
| | Search outside databases for aliases for KLK4 genePrevious GC identifers: GC19M052036 GC19M051770 GC19M056085 |
Summaries for KLK4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for KLK4: Kallikreins are a subgroup of serine proteases having diverse physiological functions. Growing evidence suggests that many kallikreins are implicated in carcinogenesis and some have potential as novel cancer and other disease biomarkers. This gene is one of the fifteen kallikrein subfamily members located in a cluster on chromosome 19. In some tissues its expression is hormonally regulated. The expression pattern of a similar mouse protein in murine developing teeth supports a role for the protein in the degradation of enamel proteins. Alternate splice variants for this gene have been described, but their biological validity has not been determined. [provided by RefSeq] Gene Wiki entry for KLK4 |
Genomic Location for KLK4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the KLK4 gene 
Entrez Gene cytogenetic band: 19q13.41 Ensembl cytogenetic band: 19q13.33 HGNC cytogenetic band: 19q13.3-q13.4KLK4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M056101:
(about GC identifiers)
Start:
|
56,101,420 bp from pter |
End:
|
56,105,806 bp from pter |
Size:
|
4,387 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011109.15
| Proteins for KLK4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: KLK4_HUMAN, Q9Y5K2 (See
protein sequence)Recommended Name: Kallikrein-4 precursor Size: 254 amino acids; 27023 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :2BDG (3D)
 2BDH (3D)
 2BDI (3D)
 
Secondary accessions: Q4VB16 Q9GZL6 Q9UBJ6REFSEQ proteins: NP_004908.3
ENSEMBL proteins: ENSP00000326159
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for KLK4: Assays for KLK4: | Protein
Domains/ Families for KLK4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9Y5K2
ProtoNet protein and cluster: Q9Y5K2 2 Blocks protein families: IPB001254 Serine protease IPB001314 Chymotrypsin serine protease family (S1) signature
UniProtKB/Swiss-Prot: KLK4_HUMAN, Q9Y5K2Similarity: Belongs to the peptidase S1 family. Kallikrein subfamilySimilarity: Contains 1 peptidase S1 domain | Gene Function for KLK4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004917
Applied Biosystems Silencer® siRNAs for KLK4
Sigma-Aldrich siRNA and siRNA Panels for KLK4  Sigma-Aldrich shRNA for KLK4  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004917                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004917                                  untagged cDNA clone in CMV expression vector: NM_004917 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004917
1 MGI phenotypic allele for Klk4 (no phenotypes)
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for KLK4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for KLK4 
5/8 Interacting proteins for KLK4 (ENSP000003261593) via UniProtKB, MINT, and/or STRING (see all 8
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): About this table
|
Drugs & Compounds for KLK4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for KLK4 |
Browse Tocris compounds for KLK4 1 Novoseek chemical compound relationship for KLK4 gene
About this table
|
Transcripts for KLK4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004917
Sigma-Aldrich siRNA and siRNA Panels for KLK4  Sigma-Aldrich shRNA for KLK4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004917 REFSEQ mRNAs for KLK4 gene: NM_004917.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004917               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004917                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004917                                  untagged cDNA clone in CMV expression vector: NM_004917  Additional cDNA sequence: AF113140.1 AF259964.1 AF259965.1 AF259966.1 AF259967.1 AF259968.1 AF259969.1 AF259971.1 AK309958.1 AY923170.1 BC069325.1 BC069403.1 BC069429.1 BC069489.1 BC096175.1 BC096176.3 BC096177.3 BC096178.3 6 DOTS entries: DT.101980454 DT.40267708 DT.92418872 DT.99934760 DT.121410173 DT.95266046 24/43 AceView cDNA sequences (see all 43
):CF134924 AF113140 AI686689 BC069403 AF259970 AF259967 AI675815 AF259968 AF126401 BC069325 BC069429 AF259966 AI888156 BU151248 CF139171 AA336074 CF147341 AF259971 NM_004917 CF147425 AF259964 BC069489 AF259969 AA603977
highest scoring ESTs for KLK4:AF113140 AF259969 BC069325 BC069403 BC069429 BC069489 AA336074 AA551449 AA552779 AA565161 Unigene Cluster for KLK4: Kallikrein-related peptidase 4 Hs.218366 [show with all ESTs]Unigene Representative Sequence: BU188282
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for KLK4 (see all 8
)
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | · | 2d | · | 2e | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6a | · | 6b | · | 6c | |
| SP1: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | - |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | - |   | - |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for KLK4
1 Ensembl transcript including schematic representation: ENST00000324041
|
Expression for KLK4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| KLK4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for KLK4
1 / 2 / 3 7 probe-sets matching KLK4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AAATTGACCC
SOURCE GeneReport for Unigene cluster: Hs.218366 UniProtKB/Swiss-Prot: KLK4_HUMAN, Q9Y5K2Tissue specificity: Expressed in prostate |
Orthologs for KLK4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for KLK4 gene from 5 species
About this table Species with no ortholog for KLK4
ENSEMBL Gene Tree for KLK4 | Paralogs for KLK4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for KLK4 gene
- KLK62 KLK132 KLK72 KLK52
|
SNPs/Variants for KLK4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for KLK4 (up to first 250kb)
|
Disorders & Mutations for KLK4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603767 disorders: 204700 UniProtKB/Swiss-Prot: KLK4_HUMAN, Q9Y5K2
Defects in KLK4 are the cause of amelogenesis imperfecta hypomaturation type 2A1 (AI2A1) [MIM:204700]. AI2A1 is an autosomal recessive defect of enamel formation. The disorder involves both primary and secondary dentitions. The teeth have a shiny agar jelly appearance and the enamel is softer than normal. Brown pigment is present in middle layers of enamel9 Novoseek disease relationships for KLK4 gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| amelogenesis imperfecta |
90.90 |
3 |
18096894 (1), 18627287 (1), 18714142 (1) |
| prostate cancer |
48.09 |
27 |
17545602 (5), 12370833 (3), 16322328 (3), 18308730 (2) (see all 11) |
| ovarian cancer |
35.67 |
7 |
11489816 (3), 15262123 (1), 16557045 (1), 11489814 (1) |
| ovarian carcinoma |
34.77 |
7 |
11489814 (5), 15262123 (1), 12738725 (1) |
| endometrial carcinoma |
27.90 |
1 |
11489814 (1) |
| cancer |
11.06 |
6 |
19147544 (3), 12370833 (1), 16557045 (1) |
| adenoma |
7.37 |
1 |
11489814 (1) |
| carcinoma |
0.00 |
2 |
11489814 (1) |
| tumors |
0.00 |
19 |
11489814 (4), 11489816 (3), 12370833 (2), 18221492 (2) (see all 7) |
About this table
Human Gene Mutation Database: KLK4 Human Genome Epidemiology Navigator: KLK4 (1 document)
|
Medical News for KLK4(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for KLK4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/67 PubMed articles for KLK4 gene (see all 67
):- Characterization of the mouse and human PRSS17 genes, their relationship to other serine proteases, and the expression of PRSS17 in developing mouse incisors. (PubMed id 10863090)1, 2, 3, 4 Hu J.C....Simmer J.P. (2000)
- Molecular cloning and characterization of prostase, an androgen- regulated serine protease with prostate-restricted expression. (PubMed id 10077646)1, 2, 3, 4 Nelson P.S....Wang K. (1999)
- Localization of a new prostate-specific antigen-related serine protease gene, KLK4, is evidence for an expanded human kallikrein gene family cluster on chromosome 19q13.3-13.4. (PubMed id 10438493)1, 2, 3, 4 Stephenson S.A....Clements J.A. (1999)
- Prostase/KLK-L1 is a new member of the human kallikrein gene family, is expressed in prostate and breast tissues, and is hormonally regulated. (PubMed id 10485467)1, 3, 4 Yousef G.M.... Diamandis E.P. (1999)
- A comprehensive nomenclature for serine proteases with homology to tissue kallikreins. (PubMed id 16800724)2, 3 Lundwall A....Yousef G.M. (2006)
- Mutation in kallikrein 4 causes autosomal recessive hypomaturation amelogenesis imperfecta. (PubMed id 15235027)3, 4 Hart P.S....Wright J.T. (2004)
- The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)3, 4 Grimwood J.... Lucas S.M. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Sequencing and expression analysis of the serine protease gene cluster located in chromosome 19q13 region. (PubMed id 11054574)3, 4 Gan L.... Wang K. (2000)
- Purification, characterization, and cloning of enamel matrix serine proteinase 1. (PubMed id 9465170)2, 3 Simmer J.P....Bartlett J.D. (1998)
|
Search for KLK4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing KLK4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing KLK4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing KLK4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for KLK4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for KLK4:

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Incremental update: 13 Oct 2009
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