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Aliases for KLHL6-AS1 Gene

Subcategory (RNA class) for KLHL6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KLHL6-AS1 Gene

  • KLHL6 Antisense RNA 1 2 3 5
  • KLHL6 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for KLHL6-AS1 Gene

Previous GeneCards Identifiers for KLHL6-AS1 Gene

  • GC00U933833
  • GC03P183267

Summaries for KLHL6-AS1 Gene

GeneCards Summary for KLHL6-AS1 Gene

KLHL6-AS1 (KLHL6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KLHL6-AS1 Gene

Genomics for KLHL6-AS1 Gene

Regulatory Elements for KLHL6-AS1 Gene

Enhancers for KLHL6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F183544 1.1 Ensembl ENCODE 0.8 -3.9 -3926 1.2 HDGF TBP PKNOX1 WRNIP1 BMI1 ZBTB40 RFX5 FOS CREM MCM3 KLHL24 YEATS2 KLHL6-AS1 ENSG00000271682
GH03F183547 1 Ensembl ENCODE 0.8 -0.3 -263 2.6 TFAP4 PKNOX1 JUN TEAD4 SIN3A FOSL1 CTBP1 GATA3 ZFHX2 POLR2A KLHL24 YEATS2 KLHL6-AS1 ENSG00000271682
GH03F183535 1.7 FANTOM5 Ensembl ENCODE 0.4 -9.5 -9470 6.9 HDGF ATF1 WRNIP1 SIN3A GLIS2 GATA2 ZNF143 ZNF263 JUNB REST KLHL6 B3GNT5 KLHL24 YEATS2 MCF2L2 KLHL6-AS1 ENSG00000271682
GH03F183552 1.4 FANTOM5 ENCODE 0.4 +6.0 6046 5.5 HDGF PKNOX1 ATF1 WRNIP1 SIN3A GATA2 ZNF143 JUNB TBX21 SMARCB1 KLHL6 B3GNT5 EIF2B5 RPS3P3 KLHL24 KLHL6-AS1
GH03F183532 1.6 FANTOM5 Ensembl ENCODE 0.3 -15.3 -15316 2.7 HDGF PKNOX1 ATF1 ARNT WRNIP1 ZNF121 NCOA1 JUNB CREB3 SMARCA4 KLHL6 HSP90AA5P ENSG00000199363 ENSG00000251730 ENSG00000201229 ENSG00000253092 LINC00888 YEATS2 B3GNT5 HTR3D
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KLHL6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KLHL6-AS1 Gene

Chromosome:
3
Start:
183,548,735 bp from pter
End:
183,552,326 bp from pter
Size:
3,592 bases
Orientation:
Plus strand

Genomic View for KLHL6-AS1 Gene

Genes around KLHL6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KLHL6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KLHL6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KLHL6-AS1 Gene

Proteins for KLHL6-AS1 Gene

Post-translational modifications for KLHL6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KLHL6-AS1 Gene

Domains & Families for KLHL6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KLHL6-AS1 Gene

Function for KLHL6-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KLHL6-AS1 Gene

Localization for KLHL6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KLHL6-AS1 Gene

Pathways & Interactions for KLHL6-AS1 Gene

SuperPathways for KLHL6-AS1 Gene

No Data Available

Interacting Proteins for KLHL6-AS1 Gene

Gene Ontology (GO) - Biological Process for KLHL6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KLHL6-AS1 Gene

Transcripts for KLHL6-AS1 Gene

mRNA/cDNA for KLHL6-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KLHL6-AS1 Gene

No ASD Table

Relevant External Links for KLHL6-AS1 Gene

GeneLoc Exon Structure for
KLHL6-AS1
ECgene alternative splicing isoforms for
KLHL6-AS1

Expression for KLHL6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KLHL6-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KLHL6-AS1 Gene

This gene is overexpressed in Liver (x21.8), Testis (x9.0), and Kidney - Cortex (x9.0).
genes like me logo Genes that share expression patterns with KLHL6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KLHL6-AS1 Gene

Orthologs for KLHL6-AS1 Gene

Evolution for KLHL6-AS1 Gene

ENSEMBL:
Gene Tree for KLHL6-AS1 (if available)
TreeFam:
Gene Tree for KLHL6-AS1 (if available)

No data available for Orthologs for KLHL6-AS1 Gene

Paralogs for KLHL6-AS1 Gene

No data available for Paralogs for KLHL6-AS1 Gene

Variants for KLHL6-AS1 Gene

Sequence variations from dbSNP and Humsavar for KLHL6-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10451932 -- 183,546,743(+) TGAAT(C/T)CATTT intron-variant, upstream-variant-2KB
rs10451933 -- 183,546,943(+) ctctc(A/G)ctctg intron-variant, upstream-variant-2KB
rs111303714 -- 183,552,400(+) CCCTC(C/T)AAAAC intron-variant
rs112691193 -- 183,548,504(+) TGTAC(C/T)GCAGT intron-variant, upstream-variant-2KB
rs112932785 -- 183,552,719(+) TCTCA(A/G)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KLHL6-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2672458 CNV deletion 23128226
esv3569148 CNV loss 25503493
esv3598924 CNV gain 21293372
esv3598926 CNV loss 21293372
nsv4144 CNV deletion 18451855

Relevant External Links for KLHL6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KLHL6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KLHL6-AS1 Gene

Disorders for KLHL6-AS1 Gene

Relevant External Links for KLHL6-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KLHL6-AS1

No disorders were found for KLHL6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KLHL6-AS1 Gene

Publications for KLHL6-AS1 Gene

No publications were found for KLHL6-AS1 Gene.

Products for KLHL6-AS1 Gene

Sources for KLHL6-AS1 Gene

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