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Aliases for KLHL6 Gene

Aliases for KLHL6 Gene

  • Kelch-Like Family Member 6 2 3
  • Kelch-Like 6 (Drosophila) 2
  • Kelch-Like Protein KLHL6 2
  • FLJ00029 6

External Ids for KLHL6 Gene

Summaries for KLHL6 Gene

GeneCards Summary for KLHL6 Gene

KLHL6 (Kelch-Like Family Member 6) is a Protein Coding gene. An important paralog of this gene is KBTBD6.

UniProtKB/Swiss-Prot for KLHL6 Gene

  • Involved in B-lymphocyte antigen receptor signaling and germinal center formation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KLHL6 Gene

Genomics for KLHL6 Gene

Genomic Location for KLHL6 Gene

Start:
183,487,531 bp from pter
End:
183,555,711 bp from pter
Size:
68,181 bases
Orientation:
Minus strand

Genomic View for KLHL6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KLHL6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KLHL6 Gene

Regulatory Elements for KLHL6 Gene

Proteins for KLHL6 Gene

  • Protein details for KLHL6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WZ60-KLHL6_HUMAN
    Recommended name:
    Kelch-like protein 6
    Protein Accession:
    Q8WZ60
    Secondary Accessions:
    • B2RB31
    • D3DNS8
    • Q8N5I1
    • Q8N892

    Protein attributes for KLHL6 Gene

    Size:
    621 amino acids
    Molecular mass:
    70359 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH32348.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAL35594.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAG37078.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for KLHL6 Gene

Proteomics data for KLHL6 Gene at MOPED

Post-translational modifications for KLHL6 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys48

Other Protein References for KLHL6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KLHL6 Gene

Domains for KLHL6 Gene

Gene Families for KLHL6 Gene

HGNC:
  • BTBD :BTB/POZ domain containing
  • KLHL :Kelch-like

Suggested Antigen Peptide Sequences for KLHL6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WZ60

UniProtKB/Swiss-Prot:

KLHL6_HUMAN
Domain:
  • Contains 1 BACK (BTB/Kelch associated) domain.:
    • Q8WZ60
  • Contains 1 BTB (POZ) domain.:
    • Q8WZ60
Similarity:
  • Contains 6 Kelch repeats.:
    • Q8WZ60
genes like me logo Genes that share domains with KLHL6: view

Function for KLHL6 Gene

Molecular function for KLHL6 Gene

UniProtKB/Swiss-Prot Function: Involved in B-lymphocyte antigen receptor signaling and germinal center formation.

Gene Ontology (GO) - Molecular Function for KLHL6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with KLHL6: view

Phenotypes for KLHL6 Gene

MGI mutant phenotypes for KLHL6:
inferred from 2 alleles
GenomeRNAi human phenotypes for KLHL6:
genes like me logo Genes that share phenotypes with KLHL6: view

Animal Models for KLHL6 Gene

MGI Knock Outs for KLHL6:

miRNA for KLHL6 Gene

miRTarBase miRNAs that target KLHL6

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for KLHL6 Gene

Localization for KLHL6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KLHL6 Gene COMPARTMENTS Subcellular localization image for KLHL6 gene
Compartment Confidence
cytosol 3
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for KLHL6 Gene

Pathways for KLHL6 Gene

SuperPathways for KLHL6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KLHL6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002467 germinal center formation IEA --
GO:0050853 B cell receptor signaling pathway IEA --
genes like me logo Genes that share ontologies with KLHL6: view

No data available for Pathways by source for KLHL6 Gene

Transcripts for KLHL6 Gene

Unigene Clusters for KLHL6 Gene

Kelch-like family member 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KLHL6 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11
SP1: - - -
SP2: - - - -
SP3: - -
SP4:
SP5: - - - -
SP6:

Relevant External Links for KLHL6 Gene

GeneLoc Exon Structure for
KLHL6
ECgene alternative splicing isoforms for
KLHL6

Expression for KLHL6 Gene

mRNA expression in normal human tissues for KLHL6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for KLHL6 Gene

This gene is overexpressed in Whole Blood (8.7), Spleen (6.1), and Small Intestine - Terminal Ileum (5.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for KLHL6 Gene

SOURCE GeneReport for Unigene cluster for KLHL6 Gene Hs.659147

mRNA Expression by UniProt/SwissProt for KLHL6 Gene

Q8WZ60-KLHL6_HUMAN
Tissue specificity: Found in germinal center B-cells.
genes like me logo Genes that share expressions with KLHL6: view

Orthologs for KLHL6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for KLHL6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KLHL6 35
  • 99.46 (n)
  • 99.84 (a)
KLHL6 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia KLHL6 35
  • 91.71 (n)
  • 96.77 (a)
KLHL6 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KLHL6 35
  • 91.36 (n)
  • 97.26 (a)
KLHL6 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Klhl6 35
  • 87.88 (n)
  • 94.67 (a)
Klhl6 16
Klhl6 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia KLHL6 36
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KLHL6 36
  • 84 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Klhl6 35
  • 87.61 (n)
  • 94.83 (a)
chicken
(Gallus gallus)
Aves KLHL6 35
  • 77.38 (n)
  • 84.26 (a)
KLHL6 36
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KLHL6 36
  • 82 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia klhl6 35
  • 70.27 (n)
  • 76.07 (a)
zebrafish
(Danio rerio)
Actinopterygii klhl6 35
  • 67.05 (n)
  • 70.89 (a)
klhl6 36
  • 70 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 40 (a)
OneToOne
Species with no ortholog for KLHL6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for KLHL6 Gene

ENSEMBL:
Gene Tree for KLHL6 (if available)
TreeFam:
Gene Tree for KLHL6 (if available)

Paralogs for KLHL6 Gene

Selected SIMAP similar genes for KLHL6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with KLHL6: view

Variants for KLHL6 Gene

Sequence variations from dbSNP and Humsavar for KLHL6 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs11075 -- 183,495,448(-) AGGTA(C/T)CCCAC intron-variant
rs906720 -- 183,487,199(+) GTGGA(C/G)GCAGG downstream-variant-500B
rs906721 -- 183,487,209(+) GCTAA(A/G)AGGTC downstream-variant-500B
rs906722 -- 183,487,312(+) AAAAG(C/T)TTGCT downstream-variant-500B
rs1001190 -- 183,493,184(-) CCTCA(A/G)TGCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KLHL6 Gene

Variant ID Type Subtype PubMed ID
nsv4144 CNV Loss 18451855
nsv878049 CNV Gain 21882294
esv259624 OTHER Complex 20981092
esv1009906 CNV Insertion 20482838
esv1042642 CNV Insertion 17803354
esv2672458 CNV Deletion 23128226

Relevant External Links for KLHL6 Gene

HapMap Linkage Disequilibrium report
KLHL6
Human Gene Mutation Database (HGMD)
KLHL6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KLHL6 Gene

Disorders for KLHL6 Gene

Relevant External Links for KLHL6

Genetic Association Database (GAD)
KLHL6
genes like me logo Genes that share disorders with KLHL6: view

No data available for UniProtKB/Swiss-Prot for KLHL6 Gene

Publications for KLHL6 Gene

  1. Specific over-expression of deltex and a new Kelch-like protein in human germinal center B cells. (PMID: 12617994) Gupta-Rossi N. … Dahan A. (Mol. Immunol. 2003) 2 3 4 23
  2. Characterization of long cDNA clones from human adult spleen. (PMID: 11214971) Hattori A. … Ohara O. (DNA Res. 2000) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. TLR8-dependent TNF-(alpha) overexpression in Fanconi anemia group C cells. (PMID: 19850743) Vanderwerf S.M. … Bagby G.C. (Blood 2009) 3

Products for KLHL6 Gene

Sources for KLHL6 Gene

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