KLHDC4 Gene
protein-coding GIFtS : 45
GCID: GC16 M087741
kelch domain containing 4
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Aliasesfor KLHDC4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Kelch Domain Containing 4 1 2 DKFZp434G05221 Kelch Domain-Containing Protein 42
Export aliases for KLHDC4 gene to outside databases Previous GC identifers: GC00U916984 GC16M086298 GC16M073482
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Summariesfor KLHDC4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor KLHDC4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000016.9 NC_018927.1 NT_010498.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the KLHDC4 gene promoter: SRF AML1a GCNF SRF (504 AA) FOXL1 POU2F1 POU2F1a GCNF-1 GCNF-2 Hlf Other transcription factors Search SABiosciences Chromatin IP Primers for KLHDC4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat KLHDC4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16q24.3 Ensembl cytogenetic band: 16q24.2 HGNC cytogenetic band: 16q24 KLHDC4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16M087741: view genomic region
(about GC identifiers )
Start:
87,730,091 bp from pter
End:
87,799,598 bp from pter
Size:
69,508 bases
Orientation:
minus strand
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Proteinsfor KLHDC4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: KLDC4_HUMAN, Q8TBB5 (See
protein sequence )Recommended Name: Kelch domain-containing protein 4 Size : 520 amino acids; 57892 Da
Secondary accessions : D3DUN3 D3DUN4 D3DUN5 Q96F29 Q9BVN3Alternative splicing : 3 isoforms : Q8TBB5-1 Q8TBB5-2 Q8TBB5-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for KLHDC4: NX_Q8TBB5 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8TBB5 KLHDC4 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (3 alternative transcripts):
NP_001171783.1 NP_001171785.1 NP_060036.2 ENSEMBL proteins: ENSP00000457570 ENSP00000262530 ENSP00000325717 ENSP00000270583 ENSP00000455824 ENSP00000455780 ENSP00000455666 ENSP00000455214 ENSP00000457990 ENSP00000457098 ENSP00000454681 ENSP00000457857 Human Recombinant Protein Products: KLHDC4 Antibody Products: Assay Products for KLHDC4:
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Protein
Domains / Familiesfor KLHDC4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
KLHDC4 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8TBB5 ProtoNet protein and cluster: Q8TBB5
1 Blocks protein family : IPB011498 Kelch UniProtKB/Swiss-Prot: KLDC4_HUMAN, Q8TBB5 Similarity : Contains 6 Kelch repeats
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Functionfor KLHDC4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for KLHDC4 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for KLHDC4 (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): KLHDC4 (NM_017566 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for KLHDC4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat KLHDC4
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KLHDC4
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Pathways & Interactionsfor KLHDC4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for KLHDC4 STRING Interaction
Network Preview (showing 4 interactants - click image to see more details)5/12 Interacting proteins for KLHDC4 (Q8TBB5 3 ENSP00000270583 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 12 )About this table
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Drugs & Compoundsfor KLHDC4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for KLHDC4 Search CenterWatch for drugs/clinical trials and news about KLHDC4 / KLDC4
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Transcriptsfor KLHDC4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for KLHDC4 gene (3 alternative transcripts): NM_001184854.1 NM_001184856.1 NM_017566.3 Unigene Cluster for KLHDC4:
Kelch domain containing 4 Hs.123450 [show with all ESTs ] Unigene Representative Sequence: AY251274 18/25 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 25 ): ENST00000568444 ENST00000567298 (uc002fkh.1 ) ENST00000568346 ENST00000568499 ENST00000316853 (uc010cht.2 ) ENST00000353170 ENST00000347925 (uc002fkj.3 )ENST00000566349 ENST00000270583 (uc002fki.3 uc002fkl.3 ) ENST00000569487 ENST00000562155 ENST00000562261 ENST00000566661 (uc010chu.1 ) ENST00000562913 ENST00000567513 ENST00000562872 ENST00000564484 ENST00000565328 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for KLHDC4 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for KLHDC4 (see all 4 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): KLHDC4 (NM_017566 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for KLHDC4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat KLHDC4
Additional cDNA sequence: AK001742.1 AK023986.1 AK024496.1 AK057211.1 AK092895.1 AK097097.1 AK098630.1 AL133107.1 AY251274.1 BC001044.2 BC011680.2 BC022969.1
21 DOTS entries : DT.91741629 DT.309421
DT.100036618 DT.91741634 DT.100036617 DT.95151206 DT.75148878 DT.100787895 DT.91675958 DT.120710349 DT.120710391 DT.92053471 DT.100787896 DT.101978603 DT.120710322 DT.120710347 DT.120710380 DT.120710382 DT.120710384 DT.91658278 DT.120710400 24/190 AceView cDNA sequences (see all 190 ):
AW137862 AI276461 BM715028 BQ013761 AK098630 CR600527 BC001044 BG574152 BX096670 BE280463 AI652077 AI160590 BE407092 NM_017566 CA455055 AK127434 BF001898 BM760792 AL133107 AK092895 BQ017135 CB529461 BM556502 AI934942 GeneLoc Exon Structure 5/24 Alternative Splicing Database (ASD) splice patterns (SP) for KLHDC4 (see all 24 ) About this scheme ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b · 7c · 7d ^ 8a · 8b · 8c · 8d ^ 9 ^ 10 ^ 11a · 11b · SP1 :             -   -   -     -       -   -                 -   -   -     SP2 :             -   -   -     -       -   -                 -   -   -   -   SP3 :             -   -   -   -   -   -   -   -   -                 -   -   -     SP4 :                                               -   -     SP5 :                                             -   -   -    
ExUns: 11c · 11d · 11e ^ 12 ^ 13a · 13b · 13c · 13d ^ 14 ^ 15 ^ 16a · 16b · 16c ^ 17a · 17b ^ 18 SP1 :     -   -               -       -       SP2 : -   -   -   -               -       -       SP3 :     -   -               -       -       SP4 :     -   -               -       -       SP5 :     -   -               -            
ECgene alternative splicing isoforms for KLHDC4
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Expression for KLHDC4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section KLHDC4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image KLHDC4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Intermediate Mesoderm Intermediate Mesoderm Intermediate Mesoderm Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See KLHDC4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for KLHDC4 SOURCE GeneReport for Unigene cluster: Hs.123450 SABiosciences Custom PCR Arrays for KLHDC4 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for KLHDC4Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat KLHDC4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat KLHDC4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat KLHDC4 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KLHDC4
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Orthologsfor KLHDC4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for KLHDC4 gene from 9/25 species (see all 25 ) About this table
ENSEMBL Gene Tree for KLHDC4 (if available)TreeFam Gene Tree for KLHDC4 (if available)
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Paralogsfor KLHDC4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for KLHDC4 gene 1 SIMAP similar gene for KLHDC4 using alignment to 8 protein entries: KLDC4_HUMAN (see all proteins ):DKFZp434G0522
KLHDC4 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for KLHDC4 PGOHUM00000246106
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Genomic Variantsfor KLHDC4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 16 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for KLHDC4 (87730091 - 87799598 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 6 variations for KLHDC4 2 CNVs : 67077 77453 4 Indels : 25714 25715 41809 34403
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing KLHDC4
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Disorders
/ Diseasesfor KLHDC4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
KLHDC4 for disorders About GeneDecksing 1 disease for KLHDC4 : About MalaCards malaria Export disorders for KLHDC4 gene to outside databases
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Publicationsfor KLHDC4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for KLHDC4 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with KLHDC4) Utopia : connect your pdf to the dynamic world of online information
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 1 , 2 Olsen J.V....Mann M. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692) 2 Rigbolt K.T....Blagoev B. (2011) Genome-wide YFP fluorescence complementation screen id entifies new regulators for telomere signaling in human cells. (PubMed id 21044950) 1 Lee O.H....Songyang Z. (2011) Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336) 2 Cantin G.T....Yates J.R. III (2008) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556) 1 Suzuki Y.... Sugano S. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 Ota T.... Sugano S. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 1 Beausoleil S.A....Gygi S.P. (2004)
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External Searches for KLHDC4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing KLHDC4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing KLHDC4 gene
(According to HUGE )
About This Section --
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Specialized Databases showing KLHDC4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for KLHDC4 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for KLHDC4 gene: Search GeneIP for patents involving KLHDC4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor KLHDC4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for KLHDC4 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for KLHDC4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for KLHDC4 OriGene Protein Over-expression Lysate for KLHDC4 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for KLHDC4 OriGene 3'-UTR Clone for KLHDC4 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for KLHDC4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for KLHDC4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for KLHDC4 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for KLHDC4 OriGene Custom Protein Services for KLHDC4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat KLHDC4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing KLHDC4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat KLHDC4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat KLHDC4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat KLHDC4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat KLHDC4
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KLHDC4 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KLHDC4
Search ThermoFisher Antibodies for KLHDC4
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat KLHDC4
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