KLF10 Gene
protein-coding GIFtS: 61
GCID: GC08M103661
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|
Kruppel-like factor 10(Previous name: TGFB inducible early growth response )
(Previous symbol: TIEG)
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Aliases
for KLF10 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Kruppel-Like Factor 101 2 | | Transforming Growth Factor-Beta-Inducible Early Growth Response Protein 12 3 | | TIEG1 2 3 | | EGR-Alpha1 | | TIEG11 2 3 | | TIEG-12 3 | | EGRA1 2 | | TGFB-Inducible Early Growth Response Protein 12 3 | | TGFB Inducible Early Growth Response1 2 | | Krueppel-Like Factor 102 |
Export aliases for KLF10 gene to outside databasesPrevious GC identifers: GC08M103731 GC08M098862 |
Summaries
for KLF10 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
UniProtKB/Swiss-Prot: KLF10_HUMAN, Q13118Function: Transcriptional repressor involved in the regulation of cell growth. Inhibits cell growth. Binds to theconsensus sequence 5'-GGTGTG-3'
Gene Wiki entry for KLF10
|
Genomic Views
for KLF10 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000008.10 NC_018919.1 NT_008046.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the KLF10 gene promoter:
CBF-B Lmo2 CP1A CP1C CBF-C Egr-4
Other transcription factors
Search SABiosciences Chromatin IP Primers for KLF10
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat KLF10 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 8q22.2 Ensembl cytogenetic band: 8q22.3 HGNC cytogenetic band: 8q22.3KLF10 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08M103661: view genomic region
(about GC identifiers)
Start:
|
103,661,005 bp from pter |
End:
|
103,668,130 bp from pter |
Size:
|
7,126 bases |
Orientation:
|
minus strand |
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Proteins
for KLF10 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: KLF10_HUMAN, Q13118 (See
protein sequence)Recommended Name: Krueppel-like factor 10 Size: 480 amino acids; 52555 Da
Subcellular location: Nucleus
1 PDB 3D structure from  and Proteopedia  for KLF10:2EPA (3D)
Secondary accessions: A8MVH0 B2R794 O75411 Q503B2Alternative splicing: 2 isoforms: Q13118-1 Q13118-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for KLF10: NX_Q13118
Post-translational modifications:
Ubiquitinated; mediated by SIAH1 and leading to its subsequent proteasomal degradation (Probable)1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q13118
KLF10 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001027453.1 NP_005646.1
ENSEMBL proteins: ENSP00000285407 ENSP00000379222
Human Recombinant Protein Products for KLF10:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005634 | nucleus |
IEA | -- |
KLF10 for ontologies About GeneDecksing
KLF10 Antibody Products:
Assay Products for KLF10: |
Protein
Domains /
Families
for KLF10 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
KLF10 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q13118ProtoNet protein and cluster: Q13118 1 Blocks protein family: IPB007086 C2H2-type zinc finger signature
UniProtKB/Swiss-Prot: KLF10_HUMAN, Q13118Similarity: Belongs to the Sp1 C2H2-type zinc-finger protein familySimilarity: Contains 3 C2H2-type zinc fingers |
Function
for KLF10 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: KLF10_HUMAN, Q13118Function: Transcriptional repressor involved in the regulation of cell growth. Inhibits cell growth. Binds to theconsensus sequence 5'-GGTGTG-3'Induction: By TGFB1 Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table
KLF10 for ontologies About GeneDecksing
Phenotypes:
2 GenomeRNAi human phenotypes for KLF10:
6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Klf10):
KLF10 for phenotypes About GeneDecksing
Animal Models:
Mouse knock-outs for KLF10: Klf10tm1Wkle Klf10tm1Sub
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for KLF10 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for KLF10 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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Synthesis Service for KLF10 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KLF10 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KLF10 |
|
Pathways & Interactions
for KLF10 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Development_TGF-beta receptor signaling | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 EMD Millipore Pathway for KLF10
1  GeneGo (Thomson Reuters) Pathway for KLF10
KLF10 for pathways About GeneDecksing
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for KLF10
STRING Interaction
Network Preview (showing 5 interactants - click image to see 18)
5/22 Interacting proteins for KLF10 (Q131181, 2, 3 ENSP000002854074) via UniProtKB, MINT, STRING, and/or I2D (see all 22)About this table
Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13): About this table
KLF10 for ontologies About GeneDecksing
|
Drugs & Compounds
for KLF10 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
KLF10 for compounds About GeneDecksing
 Browse Tocris compounds for KLF10
3 Novoseek chemical compound relationships for KLF10 gene About this table
Search CenterWatch for drugs/clinical trials and news about KLF10
|
Transcripts
for KLF10 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for KLF10 gene (2 alternative transcripts): NM_001032282.2 NM_005655.2 Unigene Cluster for KLF10: Kruppel-like factor 10 Hs.435001 [show with all ESTs]Unigene Representative Sequence: NM_0010322822 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000285407(uc011lhk.1) ENST00000395884(uc011lhj.1)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for KLF10 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for KLF10 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): KLF10 (NM_005655) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for KLF10 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KLF10 |
Additional cDNA sequence: AK312894.1 BC011538.1 BC095399.1 BT006634.1 HF546210.1 HF546211.1 S81439.1 U21847.1 X75691.1 5 DOTS entries: DT.97861928 DT.92432050 DT.121491926 DT.92432046 DT.121430175 24/222 AceView cDNA sequences (see all 222): BM976714 F03406 CA976153 AL602848 BG575855 BM790388 AW193350 AI620863 AU134029 AI554466 AL547175 AI582482 BU684687 AI979158 BM843232 BM463731 AA101468 AL602758 CB145828 AA761413 BM755411 BI766842 BQ215325 AA342112
GeneLoc Exon Structure
|
Expression
for KLF10 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| KLF10 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GAGATGTAAA
About this image
See KLF10 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for KLF10
SOURCE GeneReport for Unigene cluster: Hs.435001
SABiosciences Expression via Pathway-Focused PCR Arrays including KLF10:
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for KLF10
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat KLF10 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat KLF10 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat KLF10 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KLF10 |
Orthologs
for KLF10 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for KLF10 gene from 5/19 species (see all 19) About this table
ENSEMBL Gene Tree for KLF10 (if available)
TreeFam Gene Tree for KLF10 (if available) |
Paralogs
for KLF10 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for KLF10 gene
- KLF12 KLF112 KLF62 KLF42 KLF52 KLF142 KLF162 KLF22
- KLF152 KLF92 KLF122 KLF32 KLF72 KLF132 KLF82
3 SIMAP similar genes for KLF10 using alignment to 3 protein entries: KLF10_HUMAN (see all proteins):KLF11 TIEG2 KLF7
KLF10 for paralogs About GeneDecksing
|
Genomic Variants
for KLF10 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 8 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for KLF10 (103661005 - 103668130 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for KLF10
1 CNV: 7659
Human Gene Mutation Database (HGMD): KLF10
| SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing KLF10 |
|
Disorders
/ Diseases
for KLF10 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
KLF10 for disorders About GeneDecksing
OMIM gene information: 601878
OMIM disorders: --
20/27  diseases for KLF10 (see all 27): About MalaCardsborjeson-forssman-lehmann syndrome pallister-hall syndrome denys-drash syndrome inferior myocardial infarction
renal clear cell carcinoma frasier syndrome myocardial infarction goldenhar syndrome
acute lymphoblastic leukemia breast-ovarian cancer lymphoblastic leukemia nephroblastoma
ovarian cancer osteosarcoma brain cancer breast cancer
pancreatitis periodontitis pancreatic cancer colorectal cancer
3 diseases from the University of Copenhagen DISEASES database for KLF10:Nephroblastoma Pallister-Hall syndrome Denys-Drash syndrome 7 Novoseek disease relationships for KLF10 gene About this table
| Disease |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| pancreas exocrine |
43.2 |
1 |
10762604 (1) |
| pancreatic carcinoma |
41.7 |
5 |
9492071 (1), 12173049 (1), 9443078 (1) |
| breast cancer |
21.8 |
6 |
9443078 (2), 9492071 (1), 15492278 (1), 15218362 (1) |
| osteosarcoma |
16 |
3 |
10816551 (1), 12173049 (1) |
| cancer |
7.06 |
3 |
18930345 (2), 9443078 (1) |
| tumors |
1.85 |
14 |
15218362 (5), 9492071 (1), 9443078 (1), 12841681 (1) (see all 6) |
| lymphoma |
0 |
2 |
15492278 (1), 15927846 (1) |
Human Genome Epidemiology (HuGE) Navigator: KLF10 (6 documents)
Export disorders for KLF10 gene to outside databases
|
Publications
for KLF10 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for KLF10 gene, integrated from 9 sources (see all 86):
(articles sorted by number of sources associating them with KLF10) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- TGFbeta-inducible early gene (TIEG) also codes for early growth response alpha (EGRalpha): evidence of multiple transcripts from alternate promoters. (PubMed id 9721211)1, 2, 3, 9 Fautsch M.P....Wieben E.D. (1998)
- Characterization of an early growth response gene, which encodes a zinc finger transcription factor, potentially involved in cell cycle regulation. (PubMed id 8584037)1, 2, 3 Blok L.J.... Tindall D.J. (1995)
- Modulation of transforming growth factor beta (TGFbeta)/Smad transcriptional responses through targeted degradation of TGFbeta- inducible early gene-1 by human seven in absentia homologue. (PubMed id 12072443)1, 2, 9 Johnsen S.A....Spelsberg T.C. (2002)
- Identification of a novel TGF-beta-regulated gene encoding a putative zinc finger protein in human osteoblasts. (PubMed id 8532536)1, 2, 9 Subramaniam M....Spelsberg T.C. (1995)
- Identification and characterization of a consensus DNA binding element for the zinc finger transcription factor TIEG/EGRalpha. (PubMed id 12804117)1, 2, 9 Chrisman H.R. and Tindall D.J. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Tissue, cell type, and breast cancer stage-specific expression of a TGF-beta inducible early transcription factor gene. (PubMed id 9443078)1, 9 Subramaniam M....Spelsberg T.C. (1998)
- Bone marrow stroma cells regulate TIEG1 expression in acute lymphoblastic leukemia cells: role of TGFbeta/BMP-6 and TIEG1 in chemotherapy escape. (PubMed id 18798273)1, 9 DA...Rian E. (2008)
- Differential gene expression of TGF beta inducible early gene (TIEG), Smad7, Smad2 and Bard1 in normal and malignant breast tissue. (PubMed id 15218362)1, 9 Reinholz M.M....Spelsberg T.C. (2004)
- TGFbeta inducible early gene enhances TGFbeta/Smad-dependent transcriptional responses. (PubMed id 12173049)1, 9 Johnsen S.A....Spelsberg T.C. (2002)
|
External Searches for KLF10 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing KLF10 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing KLF10 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing KLF10 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for KLF10 gene:
Search GeneIP for patents involving KLF10
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for KLF10 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KLF10 |
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