Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KIRREL3-AS3 Gene

Subcategory (RNA class) for KIRREL3-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KIRREL3-AS3 Gene

  • KIRREL3 Antisense RNA 3 2 3 5
  • KIRREL3 Antisense RNA 3 (Non-Protein Coding) 2 3
  • Proline Rich 10 2 3
  • NCRNA00288 3 4
  • PRR10 3 4
  • KIRREL3 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 288 2
  • KIRREL3 Antisense RNA 1 4
  • Proline-Rich Protein 10 4

External Ids for KIRREL3-AS3 Gene

Previous HGNC Symbols for KIRREL3-AS3 Gene

  • PRR10
  • NCRNA00288

Previous GeneCards Identifiers for KIRREL3-AS3 Gene

  • GC11U901880
  • GC11P126876

Summaries for KIRREL3-AS3 Gene

GeneCards Summary for KIRREL3-AS3 Gene

KIRREL3-AS3 (KIRREL3 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIRREL3-AS3 Gene

Genomics for KIRREL3-AS3 Gene

Regulatory Elements for KIRREL3-AS3 Gene

Enhancers for KIRREL3-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G126916 1 Ensembl ENCODE 10.2 -84.9 -84902 2.8 PKNOX1 EBF1 FOSL1 ARID3A FOS NFE2 IKZF2 MAFK NFE2L2 RFX1 ENSG00000254938 KIRREL3-AS2 LOC105369558 KIRREL3-AS3 KIRREL3 GC11P126915 PIR59930 ENSG00000279358
GH11G127002 1.2 Ensembl ENCODE dbSUPER 7.8 +0.6 591 1.4 ZNF263 CTCF MAZ MXI1 RNF2 SIN3A RBBP5 RAD21 HDAC2 SMC3 KIRREL3 KIRREL3-AS3 GC11P127016
GH11G126977 0.7 ENCODE dbSUPER 11.2 -24.6 -24574 0.8 BCL11A TEAD4 KIRREL3-AS3 KIRREL3 MIR3167 KIRREL3-AS2
GH11G126948 0.7 ENCODE dbSUPER 10.1 -53.5 -53519 1.6 CTCF JUND LOC105369558 KIRREL3 KIRREL3-AS3 KIRREL3-AS2 MIR3167
GH11G126921 0.5 FANTOM5 10.2 -81.7 -81713 0.3 CTCF ATF2 KIRREL3 KIRREL3-AS3 GC11P126915 PIR59930 ENSG00000279358
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KIRREL3-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for KIRREL3-AS3 Gene

Chromosome:
11
Start:
127,002,910 bp from pter
End:
127,006,058 bp from pter
Size:
3,149 bases
Orientation:
Plus strand

Genomic View for KIRREL3-AS3 Gene

Genes around KIRREL3-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIRREL3-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIRREL3-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIRREL3-AS3 Gene

Proteins for KIRREL3-AS3 Gene

  • Protein details for KIRREL3-AS3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7Y1-KIAS3_HUMAN
    Recommended name:
    Putative uncharacterized protein KIRREL3-AS3
    Protein Accession:
    Q8N7Y1
    Secondary Accessions:
    • Q14CX1

    Protein attributes for KIRREL3-AS3 Gene

    Size:
    241 amino acids
    Molecular mass:
    25772 Da
    Quaternary structure:
    No Data Available

neXtProt entry for KIRREL3-AS3 Gene

Post-translational modifications for KIRREL3-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KIRREL3-AS3 Gene

Domains & Families for KIRREL3-AS3 Gene

Protein Domains for KIRREL3-AS3 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for KIRREL3-AS3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KIRREL3-AS3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for KIRREL3-AS3 Gene

Function for KIRREL3-AS3 Gene

Gene Ontology (GO) - Molecular Function for KIRREL3-AS3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with KIRREL3-AS3: view

Phenotypes for KIRREL3-AS3 Gene

GenomeRNAi human phenotypes for KIRREL3-AS3:
genes like me logo Genes that share phenotypes with KIRREL3-AS3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KIRREL3-AS3 Gene

Localization for KIRREL3-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KIRREL3-AS3 Gene

Pathways & Interactions for KIRREL3-AS3 Gene

SuperPathways for KIRREL3-AS3 Gene

No Data Available

Interacting Proteins for KIRREL3-AS3 Gene

Selected Interacting proteins: Q8N7Y1-KIAS3_HUMAN for KIRREL3-AS3 Gene via UniProtKB IID

Symbol External ID(s) Details
PSMA3

Gene Ontology (GO) - Biological Process for KIRREL3-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KIRREL3-AS3 Gene

Drugs & Compounds for KIRREL3-AS3 Gene

No Compound Related Data Available

Transcripts for KIRREL3-AS3 Gene

mRNA/cDNA for KIRREL3-AS3 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KIRREL3-AS3 Gene

KIRREL3 antisense RNA 3:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KIRREL3-AS3 Gene

No ASD Table

Relevant External Links for KIRREL3-AS3 Gene

GeneLoc Exon Structure for
KIRREL3-AS3
ECgene alternative splicing isoforms for
KIRREL3-AS3

Expression for KIRREL3-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KIRREL3-AS3 Gene

SOURCE GeneReport for Unigene cluster for KIRREL3-AS3 Gene:

Hs.730461
genes like me logo Genes that share expression patterns with KIRREL3-AS3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KIRREL3-AS3 Gene

Orthologs for KIRREL3-AS3 Gene

Evolution for KIRREL3-AS3 Gene

ENSEMBL:
Gene Tree for KIRREL3-AS3 (if available)
TreeFam:
Gene Tree for KIRREL3-AS3 (if available)

No data available for Orthologs for KIRREL3-AS3 Gene

Paralogs for KIRREL3-AS3 Gene

(1) SIMAP similar genes for KIRREL3-AS3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with KIRREL3-AS3: view

No data available for Paralogs for KIRREL3-AS3 Gene

Variants for KIRREL3-AS3 Gene

Sequence variations from dbSNP and Humsavar for KIRREL3-AS3 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000000836 -- 127,003,001(+) CTCAT(A/G)GCCCC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000282982 -- 127,002,753(+) CTGTT(C/G)TTTAA intron-variant, upstream-variant-2KB
rs1000340678 -- 127,005,830(+) TAAAA(A/G)TTGTT intron-variant
rs1001009699 -- 127,004,136(+) TGGGC(A/G)CACTG nc-transcript-variant, upstream-variant-2KB
rs1001292290 -- 127,003,912(+) GCCGG(C/G)CGGCC nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KIRREL3-AS3 Gene

Variant ID Type Subtype PubMed ID
esv2761719 CNV gain 21179565
nsv1119424 CNV insertion 24896259
nsv1133177 CNV tandem duplication 24896259
nsv539 CNV insertion 18451855

Relevant External Links for KIRREL3-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KIRREL3-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KIRREL3-AS3 Gene

Disorders for KIRREL3-AS3 Gene

Relevant External Links for KIRREL3-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KIRREL3-AS3

No disorders were found for KIRREL3-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KIRREL3-AS3 Gene

Publications for KIRREL3-AS3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. New genetic associations detected in a host response study to hepatitis B vaccine. (PMID: 20237496) Davila S. … Seielstad M. (Genes Immun. 2010) 3 64
  5. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4 64

Products for KIRREL3-AS3 Gene

Sources for KIRREL3-AS3 Gene

Content
Loading form....