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Aliases for KIRREL3-AS3 Gene

Subcategory (RNA class) for KIRREL3-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KIRREL3-AS3 Gene

  • KIRREL3 Antisense RNA 3 2 3 5
  • KIRREL3 Antisense RNA 3 (Non-Protein Coding) 2 3
  • Proline Rich 10 2 3
  • NCRNA00288 3 4
  • PRR10 3 4
  • KIRREL3 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 288 2
  • KIRREL3 Antisense RNA 1 4
  • Proline-Rich Protein 10 4

External Ids for KIRREL3-AS3 Gene

Previous HGNC Symbols for KIRREL3-AS3 Gene

  • PRR10
  • NCRNA00288

Previous GeneCards Identifiers for KIRREL3-AS3 Gene

  • GC11U901880
  • GC11P126876

Summaries for KIRREL3-AS3 Gene

GeneCards Summary for KIRREL3-AS3 Gene

KIRREL3-AS3 (KIRREL3 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIRREL3-AS3 Gene

Genomics for KIRREL3-AS3 Gene

Regulatory Elements for KIRREL3-AS3 Gene

Enhancers for KIRREL3-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F126916 0.9 Ensembl ENCODE 10.2 -84.9 -84902 2.8 PKNOX1 RFX1 BHLHE40 EBF1 TBX21 JUND ATF3 IKZF1 NFE2 FOS KIRREL3-AS2 ENSG00000254938 LOC105369558 KIRREL3-AS3 KIRREL3 GC11P126915 PIR59930 ENSG00000279358
GH11F127003 0.6 ENCODE 7.9 +0.6 591 0.6 ZNF263 CTCF MAZ RNF2 SMC3 KDM1A RAD21 EZH2 KIRREL3 KIRREL3-AS3 GC11P127016
GH11F126977 0.4 ENCODE 11.1 -24.6 -24574 0.8 BCL11A TEAD4 KIRREL3-AS3 KIRREL3 MIR3167 KIRREL3-AS2
GH11F126921 0.4 FANTOM5 10.2 -81.7 -81713 0.3 CTCF KIRREL3 KIRREL3-AS3 GC11P126915 PIR59930 ENSG00000279358
GH11F126948 0.4 ENCODE 10.1 -53.5 -53519 1.6 JUND LOC105369558 KIRREL3 KIRREL3-AS3 KIRREL3-AS2 MIR3167
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KIRREL3-AS3 on UCSC Golden Path with GeneCards custom track

Promoters for KIRREL3-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001608110 490 801 ZNF263 CTCF MAZ RNF2 RAD21 SMARCA4 SMC3 KDM1A EZH2

Genomic Location for KIRREL3-AS3 Gene

Chromosome:
11
Start:
127,002,910 bp from pter
End:
127,006,058 bp from pter
Size:
3,149 bases
Orientation:
Plus strand

Genomic View for KIRREL3-AS3 Gene

Genes around KIRREL3-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIRREL3-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIRREL3-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIRREL3-AS3 Gene

Proteins for KIRREL3-AS3 Gene

  • Protein details for KIRREL3-AS3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7Y1-KIAS3_HUMAN
    Recommended name:
    Putative uncharacterized protein KIRREL3-AS3
    Protein Accession:
    Q8N7Y1
    Secondary Accessions:
    • Q14CX1

    Protein attributes for KIRREL3-AS3 Gene

    Size:
    241 amino acids
    Molecular mass:
    25772 Da
    Quaternary structure:
    No Data Available

neXtProt entry for KIRREL3-AS3 Gene

Post-translational modifications for KIRREL3-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KIRREL3-AS3 Gene

Domains & Families for KIRREL3-AS3 Gene

Protein Domains for KIRREL3-AS3 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for KIRREL3-AS3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KIRREL3-AS3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for KIRREL3-AS3 Gene

Function for KIRREL3-AS3 Gene

Gene Ontology (GO) - Molecular Function for KIRREL3-AS3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with KIRREL3-AS3: view

Phenotypes for KIRREL3-AS3 Gene

GenomeRNAi human phenotypes for KIRREL3-AS3:
genes like me logo Genes that share phenotypes with KIRREL3-AS3: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KIRREL3-AS3 Gene

Localization for KIRREL3-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KIRREL3-AS3 Gene

Pathways & Interactions for KIRREL3-AS3 Gene

SuperPathways for KIRREL3-AS3 Gene

No Data Available

Interacting Proteins for KIRREL3-AS3 Gene

Selected Interacting proteins: Q8N7Y1-KIAS3_HUMAN for KIRREL3-AS3 Gene via UniProtKB IID

Symbol External ID(s) Details
PSMA3

Gene Ontology (GO) - Biological Process for KIRREL3-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KIRREL3-AS3 Gene

Transcripts for KIRREL3-AS3 Gene

mRNA/cDNA for KIRREL3-AS3 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KIRREL3-AS3 Gene

KIRREL3 antisense RNA 3:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KIRREL3-AS3 Gene

No ASD Table

Relevant External Links for KIRREL3-AS3 Gene

GeneLoc Exon Structure for
KIRREL3-AS3
ECgene alternative splicing isoforms for
KIRREL3-AS3

Expression for KIRREL3-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KIRREL3-AS3 Gene

SOURCE GeneReport for Unigene cluster for KIRREL3-AS3 Gene:

Hs.730461
genes like me logo Genes that share expression patterns with KIRREL3-AS3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KIRREL3-AS3 Gene

Orthologs for KIRREL3-AS3 Gene

Evolution for KIRREL3-AS3 Gene

ENSEMBL:
Gene Tree for KIRREL3-AS3 (if available)
TreeFam:
Gene Tree for KIRREL3-AS3 (if available)

No data available for Orthologs for KIRREL3-AS3 Gene

Paralogs for KIRREL3-AS3 Gene

(1) SIMAP similar genes for KIRREL3-AS3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with KIRREL3-AS3: view

No data available for Paralogs for KIRREL3-AS3 Gene

Variants for KIRREL3-AS3 Gene

Sequence variations from dbSNP and Humsavar for KIRREL3-AS3 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10538810 -- 127,002,262(+) CTATT(-/CTTAA)CTTAA intron-variant, upstream-variant-2KB
rs10893611 -- 127,006,467(+) CTGGG(G/T)ATGGC downstream-variant-500B
rs111237454 -- 127,002,585(+) AGCGC(C/G/T)GTCAC intron-variant, upstream-variant-2KB
rs11220698 -- 127,001,749(+) AGCAG(G/T)CCATG intron-variant, upstream-variant-2KB
rs11220699 -- 127,003,819(+) TGTGA(A/G)CCCCT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KIRREL3-AS3 Gene

Variant ID Type Subtype PubMed ID
esv2761719 CNV gain 21179565
nsv1119424 CNV insertion 24896259
nsv1133177 CNV tandem duplication 24896259
nsv539 CNV insertion 18451855

Relevant External Links for KIRREL3-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KIRREL3-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KIRREL3-AS3 Gene

Disorders for KIRREL3-AS3 Gene

Relevant External Links for KIRREL3-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KIRREL3-AS3

No disorders were found for KIRREL3-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KIRREL3-AS3 Gene

Publications for KIRREL3-AS3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. New genetic associations detected in a host response study to hepatitis B vaccine. (PMID: 20237496) Davila S. … Seielstad M. (Genes Immun. 2010) 3 64
  5. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4 64

Products for KIRREL3-AS3 Gene

Sources for KIRREL3-AS3 Gene

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