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Aliases for KIRREL1-IT1 Gene

Subcategory (RNA class) for KIRREL1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KIRREL1-IT1 Gene

  • KIRREL1 Intronic Transcript 1 2 3 5
  • KIRREL Intronic Transcript 1 (Non-Protein Coding) 2 3
  • KIRREL Intronic Transcript 1 2
  • KIRREL-IT1 3

External Ids for KIRREL1-IT1 Gene

Previous HGNC Symbols for KIRREL1-IT1 Gene

  • KIRREL-IT1

Summaries for KIRREL1-IT1 Gene

GeneCards Summary for KIRREL1-IT1 Gene

KIRREL1-IT1 (KIRREL1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KIRREL1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIRREL1-IT1 Gene

Genomics for KIRREL1-IT1 Gene

Regulatory Elements for KIRREL1-IT1 Gene

Enhancers for KIRREL1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H157991 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.0 -18040 32 GLI4 ZNF2 ETS1 ZNF121 GLIS2 ZNF143 FOS RUNX3 MCM3 REST LOC246784 KIRREL1 CD1E OR10T2 KIRREL1-IT1
GH01H158028 0.8 ENCODE dbSUPER 0.7 +3.7 3705 1 GATA3 JUND POLR2A CEBPB FOS RPS10P8 KIRREL1-IT1 LOC105371460
GH01H158034 1.3 Ensembl ENCODE dbSUPER 0.4 +12.0 12019 5 CTCF ZNF140 ZIC2 RAD21 ZNF316 ZBTB48 SMC3 ZNF143 RCOR1 FOS KIRREL1 RPS10P8 KIRREL1-IT1 LOC105371460
GH01H158024 0.7 Ensembl dbSUPER 0.7 -0.5 -450 1 PRDM4 PRDM1 SP7 KIRREL1-IT1 KIRREL1
GH01H158027 0.4 dbSUPER 0.7 +2.6 2592 0 CEBPB ZKSCAN1 RPS10P8 KIRREL1-IT1 LOC105371460
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KIRREL1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KIRREL1-IT1 Gene

Chromosome:
1
Start:
158,025,550 bp from pter
End:
158,031,166 bp from pter
Size:
5,617 bases
Orientation:
Plus strand

Genomic View for KIRREL1-IT1 Gene

Genes around KIRREL1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIRREL1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIRREL1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for KIRREL1-IT1 Gene

Proteins for KIRREL1-IT1 Gene

Post-translational modifications for KIRREL1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KIRREL1-IT1 Gene

Domains & Families for KIRREL1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KIRREL1-IT1 Gene

Function for KIRREL1-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for KIRREL1-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KIRREL1-IT1 Gene

Localization for KIRREL1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KIRREL1-IT1 Gene

Pathways & Interactions for KIRREL1-IT1 Gene

SuperPathways for KIRREL1-IT1 Gene

No Data Available

Interacting Proteins for KIRREL1-IT1 Gene

Gene Ontology (GO) - Biological Process for KIRREL1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KIRREL1-IT1 Gene

Drugs & Compounds for KIRREL1-IT1 Gene

No Compound Related Data Available

Transcripts for KIRREL1-IT1 Gene

mRNA/cDNA for KIRREL1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for KIRREL1-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for KIRREL1-IT1 Gene

No ASD Table

Relevant External Links for KIRREL1-IT1 Gene

GeneLoc Exon Structure for
KIRREL1-IT1
ECgene alternative splicing isoforms for
KIRREL1-IT1

Expression for KIRREL1-IT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KIRREL1-IT1 Gene

Orthologs for KIRREL1-IT1 Gene

Evolution for KIRREL1-IT1 Gene

ENSEMBL:
Gene Tree for KIRREL1-IT1 (if available)
TreeFam:
Gene Tree for KIRREL1-IT1 (if available)

No data available for Orthologs for KIRREL1-IT1 Gene

Paralogs for KIRREL1-IT1 Gene

No data available for Paralogs for KIRREL1-IT1 Gene

Variants for KIRREL1-IT1 Gene

Sequence variations from dbSNP and Humsavar for KIRREL1-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111951443 -- 158,026,835(+) ATGAA(A/G/T)AAAAG intron-variant
rs16839617 -- 158,027,886(+) AAGGA(A/C/T)TGACC intron-variant
rs376894001 -- 158,028,143(+) CTGCC(A/G/T)GAATG intron-variant
rs540182646 -- 158,029,616(+) TGAGC(C/G/T)TTTAT intron-variant
rs540425399 -- 158,032,429(+) ATAGT(A/G/T)GGTGC intron-variant, downstream-variant-500B

Relevant External Links for KIRREL1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KIRREL1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KIRREL1-IT1 Gene

Disorders for KIRREL1-IT1 Gene

Relevant External Links for KIRREL1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KIRREL1-IT1

No disorders were found for KIRREL1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KIRREL1-IT1 Gene

Publications for KIRREL1-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for KIRREL1-IT1 Gene

Sources for KIRREL1-IT1 Gene

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