Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KIRREL-IT1 Gene

Subcategory (RNA class) for KIRREL-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KIRREL-IT1 Gene

  • KIRREL Intronic Transcript 1 2 3 5
  • KIRREL Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KIRREL-IT1 Gene

Summaries for KIRREL-IT1 Gene

GeneCards Summary for KIRREL-IT1 Gene

KIRREL-IT1 (KIRREL Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIRREL-IT1 Gene

Genomics for KIRREL-IT1 Gene

Regulatory Elements for KIRREL-IT1 Gene

Enhancers for KIRREL-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G157991 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.0 -18040 32.2 GLI4 ZNF2 ETS1 ZNF121 GLIS2 ZNF143 FOS ZNF263 SP3 MCM3 LOC246784 KIRREL OR10T2 KIRREL-IT1
GH01G158024 0.9 Ensembl dbSUPER 0.7 -0.5 -450 1.0 CTCF ZNF398 ZBTB7A RAD21 ZFHX2 GLIS2 ZNF366 GLIS1 ZNF341 PRDM4 KIRREL-IT1 KIRREL
GH01G158028 0.8 ENCODE dbSUPER 0.7 +3.7 3705 1.0 GATA3 JUND CEBPB FOS RPS10P8 KIRREL-IT1 LOC105371460
GH01G158034 1.3 Ensembl ENCODE dbSUPER 0.4 +12.0 12019 5.7 CTCF ZNF140 ZIC2 RAD21 ZNF316 GLIS2 ZFHX2 ZBTB48 SMC3 RCOR1 KIRREL RPS10P8 KIRREL-IT1 LOC105371460
GH01G158027 0.4 dbSUPER 0.7 +2.6 2592 0.6 CEBPB ZKSCAN1 RPS10P8 KIRREL-IT1 LOC105371460
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KIRREL-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KIRREL-IT1 Gene

Chromosome:
1
Start:
158,025,550 bp from pter
End:
158,031,166 bp from pter
Size:
5,617 bases
Orientation:
Plus strand

Genomic View for KIRREL-IT1 Gene

Genes around KIRREL-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIRREL-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIRREL-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for KIRREL-IT1 Gene

Proteins for KIRREL-IT1 Gene

Post-translational modifications for KIRREL-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KIRREL-IT1 Gene

Domains & Families for KIRREL-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KIRREL-IT1 Gene

Function for KIRREL-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KIRREL-IT1 Gene

Localization for KIRREL-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KIRREL-IT1 Gene

Pathways & Interactions for KIRREL-IT1 Gene

SuperPathways for KIRREL-IT1 Gene

No Data Available

Interacting Proteins for KIRREL-IT1 Gene

Gene Ontology (GO) - Biological Process for KIRREL-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KIRREL-IT1 Gene

Transcripts for KIRREL-IT1 Gene

mRNA/cDNA for KIRREL-IT1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KIRREL-IT1 Gene

KIRREL intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KIRREL-IT1 Gene

No ASD Table

Relevant External Links for KIRREL-IT1 Gene

GeneLoc Exon Structure for
KIRREL-IT1
ECgene alternative splicing isoforms for
KIRREL-IT1

Expression for KIRREL-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KIRREL-IT1 Gene

SOURCE GeneReport for Unigene cluster for KIRREL-IT1 Gene:

Hs.664656
genes like me logo Genes that share expression patterns with KIRREL-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KIRREL-IT1 Gene

Orthologs for KIRREL-IT1 Gene

Evolution for KIRREL-IT1 Gene

ENSEMBL:
Gene Tree for KIRREL-IT1 (if available)
TreeFam:
Gene Tree for KIRREL-IT1 (if available)

No data available for Orthologs for KIRREL-IT1 Gene

Paralogs for KIRREL-IT1 Gene

No data available for Paralogs for KIRREL-IT1 Gene

Variants for KIRREL-IT1 Gene

Sequence variations from dbSNP and Humsavar for KIRREL-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111951443 -- 158,026,835(+) ATGAA(A/G/T)AAAAG intron-variant
rs16839617 -- 158,027,886(+) AAGGA(A/C/T)TGACC intron-variant
rs376894001 -- 158,028,143(+) CTGCC(A/G/T)GAATG intron-variant
rs540182646 -- 158,029,616(+) TGAGC(C/G/T)TTTAT intron-variant
rs540425399 -- 158,032,429(+) ATAGT(A/G/T)GGTGC intron-variant, downstream-variant-500B

Relevant External Links for KIRREL-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KIRREL-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KIRREL-IT1 Gene

Disorders for KIRREL-IT1 Gene

No disorders were found for KIRREL-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KIRREL-IT1 Gene

Publications for KIRREL-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for KIRREL-IT1 Gene

Sources for KIRREL-IT1 Gene

Content
Loading form....