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Aliases for KIN Gene

Aliases for KIN Gene

  • Kin17 DNA And RNA Binding Protein 2 3 5
  • KIN, Antigenic Determinant Of RecA Protein Homolog 3 4
  • Binding To Curved DNA 3 4
  • KIN17 3 4
  • BTCD 3 4
  • KIN, Antigenic Determinant Of RecA Protein Homolog (Mouse) 2
  • Antigenic Determinant Of RecA Protein (Mouse) Homolog 2
  • Rts2 3

External Ids for KIN Gene

Previous GeneCards Identifiers for KIN Gene

  • GC10M007741
  • GC10M007945
  • GC10M007801
  • GC10M007837
  • GC10M007715
  • GC10M007795

Summaries for KIN Gene

Entrez Gene Summary for KIN Gene

  • The protein encoded by this gene is a nuclear protein that forms intranuclear foci during proliferation and is redistributed in the nucleoplasm during the cell cycle. Short-wave ultraviolet light provokes the relocalization of the protein, suggesting its participation in the cellular response to DNA damage. Originally selected based on protein-binding with RecA antibodies, the mouse protein presents a limited similarity with a functional domain of the bacterial RecA protein, a characteristic shared by this human ortholog. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jan 2012]

GeneCards Summary for KIN Gene

KIN (Kin17 DNA And RNA Binding Protein) is a Protein Coding gene. GO annotations related to this gene include RNA binding and double-stranded DNA binding.

UniProtKB/Swiss-Prot for KIN Gene

  • Involved in DNA replication and the cellular response to DNA damage. May participate in DNA replication factories and create a bridge between DNA replication and repair mediated by high molecular weight complexes. May play a role in illegitimate recombination and regulation of gene expression. May participate in mRNA processing. Binds, in vitro, to double-stranded DNA. Also shown to bind preferentially to curved DNA in vitro and in vivo (By similarity). Binds via its C-terminal domain to RNA in vitro.

Gene Wiki entry for KIN Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIN Gene

Genomics for KIN Gene

Regulatory Elements for KIN Gene

Genomic Location for KIN Gene

Chromosome:
10
Start:
7,750,962 bp from pter
End:
7,788,027 bp from pter
Size:
37,066 bases
Orientation:
Minus strand

Genomic View for KIN Gene

Genes around KIN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIN Gene

Proteins for KIN Gene

  • Protein details for KIN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O60870-KIN17_HUMAN
    Recommended name:
    DNA/RNA-binding protein KIN17
    Protein Accession:
    O60870
    Secondary Accessions:
    • B4DX32

    Protein attributes for KIN Gene

    Size:
    393 amino acids
    Molecular mass:
    45374 Da
    Quaternary structure:
    • Interacts with SV40 large T antigen. Associated with DNA polymerase alpha, RFC1 and cyclin A, in multiprotein DNA replication complexes. Also associates with replication origins at the G1/S phase boundary and throughout the S phase in vivo.
    Miscellaneous:
    • Recognized by antibodies directed against the RecA protein.

    Three dimensional structures from OCA and Proteopedia for KIN Gene

    Alternative splice isoforms for KIN Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for KIN Gene

Proteomics data for KIN Gene at MOPED

Post-translational modifications for KIN Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KIN Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for KIN Gene

Domains & Families for KIN Gene

Protein Domains for KIN Gene

Graphical View of Domain Structure for InterPro Entry

O60870

UniProtKB/Swiss-Prot:

KIN17_HUMAN :
  • The C-terminal domain (268-393) is organized into 2 subdomains that bear structural similarities to SH3-like domains. Both subdomains adopt a similar 5-stranded beta-barrel-like fold and are connected to each other by a short linker of 5 residues. The 5 beta-sheets are packed at approximately right angles against each other. A highly conserved groove formed at the interface between the 2 subdomains, comprised of Lys residues 302 and 391 and other positively charged residues, may possibly be the site of RNA-binding.
  • Belongs to the KIN17 family.
  • Contains 1 C2H2-type zinc finger.
Domain:
  • The C-terminal domain (268-393) is organized into 2 subdomains that bear structural similarities to SH3-like domains. Both subdomains adopt a similar 5-stranded beta-barrel-like fold and are connected to each other by a short linker of 5 residues. The 5 beta-sheets are packed at approximately right angles against each other. A highly conserved groove formed at the interface between the 2 subdomains, comprised of Lys residues 302 and 391 and other positively charged residues, may possibly be the site of RNA-binding.
Family:
  • Belongs to the KIN17 family.
Similarity:
  • Contains 1 C2H2-type zinc finger.
genes like me logo Genes that share domains with KIN: view

No data available for Gene Families for KIN Gene

Function for KIN Gene

Molecular function for KIN Gene

UniProtKB/Swiss-Prot Function:
Involved in DNA replication and the cellular response to DNA damage. May participate in DNA replication factories and create a bridge between DNA replication and repair mediated by high molecular weight complexes. May play a role in illegitimate recombination and regulation of gene expression. May participate in mRNA processing. Binds, in vitro, to double-stranded DNA. Also shown to bind preferentially to curved DNA in vitro and in vivo (By similarity). Binds via its C-terminal domain to RNA in vitro.
UniProtKB/Swiss-Prot Induction:
By UVC irradiation in quiescent primary fibroblasts. By mitomycin C in human melanoma MeWO cells.

Gene Ontology (GO) - Molecular Function for KIN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003690 double-stranded DNA binding IEA,ISS --
genes like me logo Genes that share ontologies with KIN: view
genes like me logo Genes that share phenotypes with KIN: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for KIN Gene

Localization for KIN Gene

Subcellular locations from UniProtKB/Swiss-Prot for KIN Gene

Nucleus. Cytoplasm. Note=During S phase, strongly associated with the nuclear matrix, and to chromosomal DNA in the presence of DNA damage. Also shows cytoplasmic localization in elongated spermatids. {ECO:0000250 UniProtKB:Q8K339, ECO:0000269 PubMed:11880372, ECO:0000269 PubMed:12359749, ECO:0000269 PubMed:12754299, ECO:0000269 PubMed:12853634, ECO:0000269 PubMed:15831485}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KIN Gene COMPARTMENTS Subcellular localization image for KIN gene
Compartment Confidence
nucleus 5

No data available for Gene Ontology (GO) - Cellular Components for KIN Gene

Pathways & Interactions for KIN Gene

SuperPathways for KIN Gene

No Data Available

Gene Ontology (GO) - Biological Process for KIN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006397 mRNA processing TAS 17045609
genes like me logo Genes that share ontologies with KIN: view

No data available for Pathways by source and SIGNOR curated interactions for KIN Gene

Drugs & Compounds for KIN Gene

(2) Drugs for KIN Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with KIN: view

Transcripts for KIN Gene

Unigene Clusters for KIN Gene

KIN, antigenic determinant of recA protein homolog (mouse):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KIN Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b · 14c
SP1: -
SP2: - -
SP3: - -
SP4: -
SP5:
SP6:

Relevant External Links for KIN Gene

GeneLoc Exon Structure for
KIN
ECgene alternative splicing isoforms for
KIN

Expression for KIN Gene

mRNA expression in normal human tissues for KIN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for KIN Gene

This gene is overexpressed in Peripheral blood mononuclear cells (46.8) and Monocytes (7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for KIN Gene



SOURCE GeneReport for Unigene cluster for KIN Gene Hs.397918

mRNA Expression by UniProt/SwissProt for KIN Gene

O60870-KIN17_HUMAN
Tissue specificity: Ubiquitously expressed in all tissues examined, with highest levels in skeletal muscle, heart and testis. Differentially expressed in non-tumorigenic and tumorigenic cell lines. Highly expressed in proliferating epithelial keratinocyte cells in vitro (at protein level).
genes like me logo Genes that share expression patterns with KIN: view

Protein tissue co-expression partners for KIN Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for KIN Gene

Orthologs for KIN Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for KIN Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KIN 36
  • 100 (a)
OneToOne
KIN 35
  • 99.83 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia KIN 36
  • 97 (a)
OneToOne
KIN 35
  • 90 (n)
  • 95 (a)
dog
(Canis familiaris)
Mammalia KIN 35
  • 90.9 (n)
  • 95.41 (a)
KIN 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Kin 36
  • 93 (a)
OneToOne
Kin 16
Kin 35
  • 85.85 (n)
  • 92.07 (a)
oppossum
(Monodelphis domestica)
Mammalia KIN 36
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KIN 36
  • 76 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Kin 35
  • 85.88 (n)
  • 93.37 (a)
chicken
(Gallus gallus)
Aves KIN 36
  • 89 (a)
OneToOne
KIN 35
  • 81.41 (n)
  • 88.17 (a)
lizard
(Anolis carolinensis)
Reptilia KIN 36
  • 84 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.6806 35
tropical clawed frog
(Silurana tropicalis)
Amphibia kin 35
  • 76.61 (n)
  • 81.75 (a)
Str.472 35
zebrafish
(Danio rerio)
Actinopterygii kin 35
  • 70.14 (n)
  • 77.08 (a)
kin 36
  • 78 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010352 35
  • 57.94 (n)
  • 55.76 (a)
fruit fly
(Drosophila melanogaster)
Insecta kin17 36
  • 52 (a)
OneToOne
kin17 37
  • 58 (a)
kin17 35
  • 55.67 (n)
  • 52.88 (a)
worm
(Caenorhabditis elegans)
Secernentea Y52B11A.9 37
  • 45 (a)
Y52B11A.9 36
  • 47 (a)
OneToOne
CELE_Y52B11A.9 35
  • 50.47 (n)
  • 47.56 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RTS2 36
  • 32 (a)
OneToOne
RTS2 38
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G55460 35
  • 54.21 (n)
  • 50.77 (a)
rice
(Oryza sativa)
Liliopsida Os.20977 35
Os03g0570300 35
  • 61.11 (n)
  • 60 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 59 (a)
OneToOne
Species with no ortholog for KIN:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for KIN Gene

ENSEMBL:
Gene Tree for KIN (if available)
TreeFam:
Gene Tree for KIN (if available)

Paralogs for KIN Gene

No data available for Paralogs for KIN Gene

Variants for KIN Gene

Sequence variations from dbSNP and Humsavar for KIN Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs927912 -- 7,774,338(-) TGGAT(A/C)TGCAT intron-variant
rs927914 -- 7,781,015(+) AGCTG(C/G)GTACA intron-variant
rs1964888 -- 7,754,629(+) tctgt(C/G)tcaga intron-variant, utr-variant-3-prime
rs2853760 -- 7,784,286(+) TCAGT(A/T)TAACA intron-variant
rs3036327 -- 7,781,612(+) acaca(-/CACA/CACACA/CACACACA)gaatc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KIN Gene

Variant ID Type Subtype PubMed ID
esv2732417 CNV Deletion 23290073

Variation tolerance for KIN Gene

Residual Variation Intolerance Score: 36.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.89; 18.53% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for KIN Gene

HapMap Linkage Disequilibrium report
KIN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KIN Gene

Disorders for KIN Gene

Relevant External Links for KIN

Genetic Association Database (GAD)
KIN
Human Genome Epidemiology (HuGE) Navigator
KIN
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KIN

No disorders were found for KIN Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KIN Gene

Publications for KIN Gene

  1. Selective interactions of human kin17 and RPA proteins with chromatin and the nuclear matrix in a DNA damage- and cell cycle-regulated manner. (PMID: 12853634) Miccoli L. … Angulo J.F. (Nucleic Acids Res. 2003) 3 4 23 67
  2. Identification and expression of the cDNA of KIN17, a zinc-finger gene located on mouse chromosome 2, encoding a new DNA-binding protein. (PMID: 1923796) Angulo J.F. … Devoret R. (Nucleic Acids Res. 1991) 2 3 23
  3. Methylation of the DNA/RNA-binding protein Kin17 by METTL22 affects its association with chromatin. (PMID: 24140279) Cloutier P. … Coulombe B. (J Proteomics 2014) 2 3
  4. The human stress-activated protein kin17 belongs to the multiprotein DNA replication complex and associates in vivo with mammalian replication origins. (PMID: 15831485) Miccoli L. … Angulo J.F. (Mol. Cell. Biol. 2005) 3 23
  5. Global genome repair is required to activate KIN17, a UVC-responsive gene involved in DNA replication. (PMID: 12525703) Masson C. … Angulo J.F. (Proc. Natl. Acad. Sci. U.S.A. 2003) 3 23

Products for KIN Gene

Sources for KIN Gene

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