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Aliases for KIF25-AS1 Gene

Subcategory (RNA class) for KIF25-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KIF25-AS1 Gene

  • KIF25 Antisense RNA 1 2 3 4 5
  • KIF25 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NCRNA00300 3 4
  • C6orf54 3 4
  • Chromosome 6 Open Reading Frame 54 2
  • KIF25 Antisense Gene Protein 1 4
  • Non-Protein Coding RNA 300 2
  • Protein HGC6.1 4
  • HGC6.1.1 3

External Ids for KIF25-AS1 Gene

Previous HGNC Symbols for KIF25-AS1 Gene

  • C6orf54
  • NCRNA00300

Previous GeneCards Identifiers for KIF25-AS1 Gene

  • GC06M168395

Summaries for KIF25-AS1 Gene

GeneCards Summary for KIF25-AS1 Gene

KIF25-AS1 (KIF25 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIF25-AS1 Gene

Genomics for KIF25-AS1 Gene

Regulatory Elements for KIF25-AS1 Gene

Enhancers for KIF25-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G168007 1.4 FANTOM5 Ensembl ENCODE 13.9 -10.8 -10800 1.7 HDAC1 FEZF1 RFX5 GATA2 ZNF366 FOS CEBPB ZNF843 ZFP69B PRDM6 KIF25-AS1 FRMD1 KIF25 LOC105378135
GH06G168030 0.9 Ensembl ENCODE 21.1 -35.1 -35091 3.0 CTCF MAZ TEAD4 ZNF398 ZBTB40 TEAD3 FOSL1 SMARCA4 GATA2 SMC3 KIF25-AS1 KIF25 FRMD1 LOC105378135
GH06G167931 1.2 Ensembl ENCODE 10.8 +63.8 63790 3.4 HNRNPUL1 FOXA2 ATF1 MLX ARID4B DMAP1 MIER2 KAT8 PBX2 HNF4A KIF25 KIF25-AS1 AFDN HGC6.3 PIR39756
GH06G168033 1.3 Ensembl ENCODE 8 -39.0 -39037 4.3 PKNOX1 ARNT FEZF1 ZNF2 FOS SP3 REST SMARCA4 GLIS1 NBN FRMD1 KIF25-AS1 LOC105378135
GH06G167963 0.9 ENCODE 11.5 +32.4 32358 3.2 HNRNPUL1 FOXA2 MLX ARID4B ZNF48 YY1 SLC30A9 GLIS2 PPARG KAT8 KIF25-AS1 KIF25 FRMD1 AFDN HGC6.3 PIR39756
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KIF25-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KIF25-AS1 Gene

Chromosome:
6
Start:
167,992,822 bp from pter
End:
167,997,077 bp from pter
Size:
4,256 bases
Orientation:
Minus strand

Genomic View for KIF25-AS1 Gene

Genes around KIF25-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KIF25-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KIF25-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIF25-AS1 Gene

Proteins for KIF25-AS1 Gene

  • Protein details for KIF25-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6Z4-KIAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein KIF25-AS1
    Protein Accession:
    Q9Y6Z4
    Secondary Accessions:
    • Q2M1U8
    • Q5SZV0
    • Q5SZV1
    • Q9Y6Z3

    Protein attributes for KIF25-AS1 Gene

    Size:
    181 amino acids
    Molecular mass:
    19411 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for KIF25-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for KIF25-AS1 Gene

Post-translational modifications for KIF25-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KIF25-AS1 Gene

Domains & Families for KIF25-AS1 Gene

Protein Domains for KIF25-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for KIF25-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KIF25-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for KIF25-AS1 Gene

Function for KIF25-AS1 Gene

Gene Ontology (GO) - Molecular Function for KIF25-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with KIF25-AS1: view

Phenotypes for KIF25-AS1 Gene

GenomeRNAi human phenotypes for KIF25-AS1:
genes like me logo Genes that share phenotypes with KIF25-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KIF25-AS1 Gene

Localization for KIF25-AS1 Gene

Gene Ontology (GO) - Cellular Components for KIF25-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with KIF25-AS1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for KIF25-AS1 Gene

Pathways & Interactions for KIF25-AS1 Gene

SuperPathways for KIF25-AS1 Gene

No Data Available

Interacting Proteins for KIF25-AS1 Gene

Selected Interacting proteins: Q9Y6Z4-KIAS1_HUMAN for KIF25-AS1 Gene via UniProtKB IID

Symbol External ID(s) Details
KRTAP3-2

Gene Ontology (GO) - Biological Process for KIF25-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with KIF25-AS1: view

No data available for Pathways by source and SIGNOR curated interactions for KIF25-AS1 Gene

Drugs & Compounds for KIF25-AS1 Gene

No Compound Related Data Available

Transcripts for KIF25-AS1 Gene

mRNA/cDNA for KIF25-AS1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KIF25-AS1 Gene

KIF25 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KIF25-AS1 Gene

No ASD Table

Relevant External Links for KIF25-AS1 Gene

GeneLoc Exon Structure for
KIF25-AS1
ECgene alternative splicing isoforms for
KIF25-AS1

Expression for KIF25-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KIF25-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KIF25-AS1 Gene

This gene is overexpressed in Brain - Cerebellum (x8.3), Brain - Spinal cord (cervical c-1) (x5.1), and Brain - Cerebellar Hemisphere (x5.0).

SOURCE GeneReport for Unigene cluster for KIF25-AS1 Gene:

Hs.225962
genes like me logo Genes that share expression patterns with KIF25-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KIF25-AS1 Gene

Orthologs for KIF25-AS1 Gene

Evolution for KIF25-AS1 Gene

ENSEMBL:
Gene Tree for KIF25-AS1 (if available)
TreeFam:
Gene Tree for KIF25-AS1 (if available)

No data available for Orthologs for KIF25-AS1 Gene

Paralogs for KIF25-AS1 Gene

No data available for Paralogs for KIF25-AS1 Gene

Variants for KIF25-AS1 Gene

Sequence variations from dbSNP and Humsavar for KIF25-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000210407 -- 167,997,966(+) ACTTA(C/T)GTAGT upstream-variant-2KB
rs1000303294 -- 167,996,199(+) CTCCC(A/C)CCTCA intron-variant
rs1000603281 -- 167,997,718(+) ATGAA(A/G)TTTAA upstream-variant-2KB
rs1000949782 -- 167,998,968(+) AATCA(C/T)TTGAA upstream-variant-2KB
rs1001054387 -- 167,998,653(+) AATGT(C/T)GAGCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KIF25-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv11062n54 CNV gain 21841781
dgv11063n54 CNV gain 21841781
dgv11064n54 CNV gain 21841781
dgv1853e212 CNV gain 25503493
dgv217e55 CNV gain 17911159
dgv218e55 CNV gain 17911159
dgv27e196 CNV duplication 17116639
dgv6199n100 CNV gain 25217958
dgv61n64 CNV gain 17921354
dgv791n27 CNV gain 19166990
esv23528 CNV gain+loss 19812545
esv2422263 CNV duplication 17116639
esv2422479 CNV duplication 17116639
esv2759493 CNV gain 17122850
esv2761051 CNV gain 21179565
esv2763949 CNV gain 21179565
esv32818 CNV gain 17666407
esv3611678 CNV gain 21293372
esv3611679 CNV gain 21293372
esv997150 CNV insertion 20482838
nsv1030168 CNV gain 25217958
nsv1074977 CNV deletion 25765185
nsv1126761 CNV deletion 24896259
nsv442020 CNV gain 18776908
nsv509173 CNV insertion 20534489
nsv515568 CNV gain+loss 19592680
nsv5593 CNV insertion 18451855
nsv605445 CNV gain 21841781
nsv605451 CNV loss 21841781
nsv8004 CNV gain 18304495
nsv830865 CNV gain 17160897

Relevant External Links for KIF25-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KIF25-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KIF25-AS1 Gene

Disorders for KIF25-AS1 Gene

Relevant External Links for KIF25-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KIF25-AS1

No disorders were found for KIF25-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KIF25-AS1 Gene

Publications for KIF25-AS1 Gene

  1. Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer. (PMID: 10382971) Minaguchi T. … Nakamura Y. (DNA Res. 1999) 2 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for KIF25-AS1 Gene

Sources for KIF25-AS1 Gene

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