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KIF25 Gene

protein-coding   GIFtS: 46
GCID: GC06P168418

Kinesin Family Member 25

(Previous name: kinesin-like 3)
(Previous symbol: KNSL3)
  Search for KIF25
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Kinesin Family Member 251 2
KNSL31 2 3 5
Kinesin-Like 31 2
Kinesin-Like Protein 32 3
Kinesin-Like Protein KIF252

External Ids:    HGNC: 63901   Entrez Gene: 38342   Ensembl: ENSG000001253377   OMIM: 6038155   UniProtKB: Q9UIL43   
ORGUL members:         

Export aliases for KIF25 gene to outside databases

Previous GC identifers: GC06P168140 GC06P168176 GC06P168177 GC06P168237 GC06P168161 GC06P165847


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for KIF25 Gene:
The protein encoded by this gene is a member of the kinesin-like protein family. Protein family members are
microtubule-dependent molecular motors that transport organelles within cells and move chromosomes during cell
division. However, the particular function of this gene product has not yet been determined. Two alternatively
spliced transcript variants which encode products have been described. Other splice variants have been found that
lack exon 2 and the initiation codon for translation. (provided by RefSeq, Jul 2008)

GeneCards Summary for KIF25 Gene:
KIF25 (kinesin family member 25) is a protein-coding gene. GO annotations related to this gene include microtubule binding and microtubule motor activity. An important paralog of this gene is KIFC2.

UniProtKB/Swiss-Prot: KIF25_HUMAN, Q9UIL4
Function: Negative regulator of amino acid starvation-induced autophagy




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000006.12  NT_025741.16  NC_018917.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for KIF25
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKIF25 promoter sequence
   Search Chromatin IP Primers for KIF25

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat KIF25


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q27   Ensembl cytogenetic band:  6q27   HGNC cytogenetic band: 6q27

KIF25 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KIF25 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06P168418:  view genomic region     (about GC identifiers)

Start:
168,396,921 bp from pter      End:
168,445,769 bp from pter
Size:
48,849 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: KIF25_HUMAN, Q9UIL4 (See protein sequence)
Recommended Name: Kinesin-like protein KIF25  
Size: 384 amino acids; 40686 Da
Secondary accessions: O94775 Q5SZU9
Alternative splicing: 2 isoforms:  Q9UIL4-1   Q9UIL4-2   

Explore the universe of human proteins at neXtProt for KIF25: NX_Q9UIL4

Explore proteomics data for KIF25 at MOPED


See KIF25 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (2 alternative transcripts): 
NP_005346.3  NP_085118.2  

ENSEMBL proteins: 
 ENSP00000388878   ENSP00000346401   ENSP00000252688   ENSP00000427464  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
KIF: Kinesins

4 InterPro protein domains:
 IPR027417 P-loop_NTPase
 IPR001752 Kinesin_motor_dom
 IPR019821 Kinesin_motor_CS
 IPR027640 Kinesin-like_fam

Graphical View of Domain Structure for InterPro Entry Q9UIL4

ProtoNet protein and cluster: Q9UIL4

UniProtKB/Swiss-Prot: KIF25_HUMAN, Q9UIL4
Similarity: Belongs to the kinesin-like protein family
Similarity: Contains 1 kinesin-motor domain


KIF25 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: KIF25_HUMAN, Q9UIL4
Function: Negative regulator of amino acid starvation-induced autophagy

     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003777microtubule motor activity IEA--
GO:0005524ATP binding IEA--
GO:0008017microtubule binding IEA--
     
KIF25 for ontologies           About GeneDecksing


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
KIF25_HUMAN, Q9UIL4: Cytoplasm, cytoskeleton (Probable)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytoskeleton4
cytosol3
nucleus2

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005737cytoplasm IEA--
GO:0005871kinesin complex IEA--
GO:0005874microtubule IEA--

KIF25 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for KIF25
Interactions:

    Search GeneGlobe Interaction Network for KIF25

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

Selected Interacting proteins for KIF25 (Q9UIL43 ENSP000003464014) via UniProtKB, MINT, STRING, and/or I2D (see all 69)
InteractantInteraction Details
GeneCardExternal ID(s)
MYCP011063, ENSP000003672074I2D: score=1 STRING: ENSP00000367207
KIF15ENSP000003240204STRING: ENSP00000324020
KIF2CENSP000003612984STRING: ENSP00000361298
KIF3AENSP000003680204STRING: ENSP00000368020
KIF3BENSP000003648644STRING: ENSP00000364864
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Gene Ontology (GO): 4 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000070mitotic sister chromatid segregation TAS9925916
GO:0006996organelle organization TAS9925916
GO:0007018microtubule-based movement IEA--
GO:0010507negative regulation of autophagy IMP--

KIF25 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for KIF25



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for KIF25 gene (2 alternative transcripts): 
NM_005355.3  NM_030615.2  

Unigene Cluster for KIF25:

Kinesin family member 25
Hs.150013  [show with all ESTs]
Unigene Representative Sequence: AK289488
6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000515361 ENST00000443060(uc010kkt.1) ENST00000354419(uc003qwk.1 uc003qwl.1)
ENST00000351261 ENST00000504593 ENST00000496008
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Additional mRNA sequence: 

AB012722.2 AK289488.1 

5 DOTS entries:

DT.92072033  DT.121396396  DT.95174531  DT.121396402  DT.70102980 

8 AceView cDNA sequences:

NM_030615 NM_005355 AB012722 BX110428 AI291787 AW629125 AW243854 BF943522 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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KIF25 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: CGGAGCAGGT
KIF25 Expression
About this image

KIF25 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

KIF25 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.150013
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KIF25

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals and fungi.

Orthologs for KIF25 gene from Selected species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
dog
(Canis familiaris)
Mammalia KIF251 kinesin family member 25 67.64(n)
63.05(a)
  100685956  XM_005615704.1  XP_005615761.1 
chicken
(Gallus gallus)
Aves KIF251 kinesin family member 25 61.23(n)
57.73(a)
  421563  XM_004935525.1  XP_004935582.1 
lizard
(Anolis carolinensis)
Reptilia KIF256
kinesin family member 25
34(a)
1 ↔ 1
1(224892533-224942244)
zebrafish
(Danio rerio)
Actinopterygii si:ch211-195e3.41 si:ch211-195e3.4 57.39(n)
53.98(a)
  558219  XM_681410.3  XP_686502.2 
fruit fly
(Drosophila melanogaster)
Insecta ncd6
non-claret disjunctional
15(a)
1 → many
3R(25630009-25632849)
worm
(Caenorhabditis elegans)
Secernentea klp-156
Protein KLP-15 (klp-15) mRNA, complete cds
17(a)
many ↔ many
I(5577055-5579299) WBGene00002225
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes KAR36
Minus-end-directed microtubule motor that function...
14(a)
1 → many
XVI(815734-817923) YPR141C


ENSEMBL Gene Tree for KIF25 (if available)
TreeFam Gene Tree for KIF25 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for KIF25 gene
KIFC22  KIFC32  KIFC12  
1 SIMAP similar gene for KIF25 using alignment to 2 protein entries:     KIF25_HUMAN (see all proteins):
KIF27

KIF25 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for KIF25 (see all 910)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 6 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1513165451,2
--168416567(+) GTATGC/GTGTCC 2 -- us2k10--------
rs1125790331,2
F--168416605(+) ACCTTT/CGTGGT 2 -- us2k12Minor allele frequency- C:0.02CSA WA 119
rs1904749631,2
--168416625(+) CTTTTA/CTTTAT 2 -- us2k10--------
rs1406080341,2
--168416690(+) CTGTAC/TGGTTC 2 -- us2k10--------
rs776784881,2
C,F--168416691(+) TGTACG/AGTTCA 2 -- us2k11Minor allele frequency- A:0.08WA 118
rs1827505711,2
--168416741(+) GGAACA/GGTCCC 2 -- us2k10--------
rs38070561,2
C,F,A--168416747(+) GTCCCC/TGAAGT 2 -- us2k17Minor allele frequency- T:0.33WA NA EA 366
rs1459219901,2
--168416748(+) TCCCCA/GAAGTG 2 -- us2k10--------
rs38070571,2
C--168416758(+) GGACAG/ACAGAA 2 -- us2k14Minor allele frequency- A:0.18NA WA EA 360
rs38070581,2
C--168416759(+) GACAGC/AAGAAA 2 -- us2k14Minor allele frequency- A:0.18NA WA EA 360

HapMap Linkage Disequilibrium report for KIF25 (168396921 - 168445769 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for KIF25 (see all 28):    About this table    
Variant IDTypeSubtypePubMed ID
esv2733270CNV Deletion23290073
esv2733271CNV Deletion23290073
esv2733272CNV Deletion23290073
dgv27e196CNV Duplication17116639
esv2422263CNV Duplication17116639
esv2422479CNV Duplication17116639
esv2446593CNV Insertion19546169
nsv509173CNV Insertion20534489
dgv7043n71CNV Loss21882294
nsv886962CNV Loss21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 603815    OMIM disorders: --


KIF25 for disorders           About GeneDecksing

Genetic Association Database (GAD): KIF25

Export disorders for KIF25 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for KIF25 gene integrated from 10 sources:
(articles sorted by number of sources associating them with KIF25)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification, genomic organization, and alternative splicing of KNSL3, a novel human gene encoding a kinesin-like protein. (PubMed id 9925916)1, 2, 9 Okamoto S.... Nakamura Y. (Cytogenet. Cell Genet. 1998)
  2. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (Nature 2003)
  3. Assignment1 of CSRP1 encoding the LIM domain protein CRP1, to human chromosome 1q32 by fluorescence in situ hybridization. (PubMed id 9925910)1, 3 Erdel M. and Weiskirchen R. (Cytogenet. Cell Genet. 1998)
  4. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PubMed id 23319000)1 Luykx J.J....Ophoff R.A. (Mol. Psychiatry 2013)
  5. Genome-wide siRNA screen reveals amino acid starvation-induced autophagy requires SCOC and WAC. (PubMed id 22354037)2 McKnight N.C.... Tooze S.A. (EMBO J. 2012)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  7. All kinesin superfamily protein, KIF, genes in mouse and human. (PubMed id 11416179)1 Miki H....Hirokawa N. (Proc. Natl. Acad. Sci. U.S.A. 2001)
  8. The roles of microtubule-based motor proteins in mitosis: comprehensive RNAi analysis in the Drosophila S2 cell line. (PubMed id 12975346)9 Goshima G. and Vale R.D. (J. Cell Biol. 2003)
  9. Heterotrimeric kinesin II is the microtubule motor protein responsible for pigment dispersion in Xenopus melanophores. (PubMed id 9852150)9 Tuma M.C....Gelfand V. (J. Cell Biol. 1998)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 3834 HGNC: 6390 AceView: KIF25 Ensembl:ENSG00000125337 euGenes: HUgn3834
ECgene: KIF25 H-InvDB: KIF25

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for KIF25 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for KIF25 gene:
Search GeneIP for patents involving KIF25

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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