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KIF12 Gene

protein-coding   GIFtS: 50
GCID: GC09M116848

Kinesin Family Member 12

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Kinesin Family Member 121 2
Kinesin-Like Protein KIF122

External Ids:    HGNC: 214951   Entrez Gene: 1132202   Ensembl: ENSG000001368837   OMIM: 6112785   UniProtKB: Q96FN53   
ORGUL members:         

Export aliases for KIF12 gene to outside databases

Previous GC identifers: GC09M110307 GC09M112229 GC09M113933 GC09M115893 GC09M086460


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for KIF12 Gene:
KIF12 is a member of the kinesin superfamily of microtubule-associated molecular motors (see MIM 148760) that play
important roles in intracellular transport and cell division (Nakagawa et al., 1997 (PubMed 9275178)).(supplied
by OMIM, Mar 2008)

GeneCards Summary for KIF12 Gene:
KIF12 (kinesin family member 12) is a protein-coding gene. GO annotations related to this gene include microtubule binding and microtubule motor activity.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000009.11  NT_008470.20  NC_018920.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the KIF12 gene promoter:
         NF-1/L   NF-1   SREBP-1c   Pax-2   Pax-2a   SREBP-1b   PPAR-gamma1   SREBP-1a   GATA-6   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKIF12 promoter sequence
   Search Chromatin IP Primers for KIF12

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat KIF12


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q32   Ensembl cytogenetic band:  9q32   HGNC cytogenetic band: 9q33.1

KIF12 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KIF12 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09M116848:  view genomic region     (about GC identifiers)

Start:
116,848,406 bp from pter      End:
116,861,507 bp from pter
Size:
13,102 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: KIF12_HUMAN, Q96FN5 (See protein sequence)
Recommended Name: Kinesin-like protein KIF12  
Size: 646 amino acids; 70660 Da
Secondary accessions: Q5TBE0

Explore the universe of human proteins at neXtProt for KIF12: NX_Q96FN5

Explore proteomics data for KIF12 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See KIF12 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_612433.1  
    ENSEMBL proteins: 
     ENSP00000363232   ENSP00000473459  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    KIF: Kinesins

    5 InterPro protein domains:
     IPR027417 P-loop_NTPase
     IPR028763 Kif12
     IPR001752 Kinesin_motor_dom
     IPR019821 Kinesin_motor_CS
     IPR027640 Kinesin-like_fam

    Graphical View of Domain Structure for InterPro Entry Q96FN5

    ProtoNet protein and cluster: Q96FN5

    UniProtKB/Swiss-Prot: KIF12_HUMAN, Q96FN5
    Similarity: Belongs to the kinesin-like protein family
    Similarity: Contains 1 kinesin-motor domain


    Find genes that share domains with KIF12           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0003777microtubule motor activity IEA--
    GO:0005524ATP binding IEA--
    GO:0008017microtubule binding IEA--
         
    Find genes that share ontologies with KIF12           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for KIF12:
     Decreased nuclei size in G2M 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for KIF12

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    KIF12_HUMAN, Q96FN5: Cytoplasm, cytoskeleton (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytoskeleton4
    cytosol3
    mitochondrion2
    nucleus1
    peroxisome1

    Gene Ontology (GO): 5 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005737cytoplasm IEA--
    GO:0005871kinesin complex IEA--
    GO:0005874microtubule IEA--
    GO:0070062extracellular vesicular exosome IDA19056867

    Find genes that share ontologies with KIF12           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for KIF12
    Interactions:

        Search GeneGlobe Interaction Network for KIF12

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for KIF12 (Q96FN53 ENSP000003632324) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MYCP011063, ENSP000003672074I2D: score=1 STRING: ENSP00000367207
    CKAP5ENSP000003465664STRING: ENSP00000346566
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    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007018microtubule-based movement IEA--
    GO:0008150biological_process ND--

    Find genes that share ontologies with KIF12           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for KIF12



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for KIF12 gene: 
    NM_138424.1  

    Unigene Cluster for KIF12:

    Kinesin family member 12
    Hs.28149  [show with all ESTs]
    Unigene Representative Sequence: BC010626
    5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000498016 ENST00000374118(uc004bif.3) ENST00000468460(uc004big.3)
    ENST00000473174 ENST00000491059
    miRNA
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    Additional mRNA sequence: BC010626.1 

    7 DOTS entries:

    DT.91754087  DT.95155814  DT.100672530  DT.426969  DT.212998  DT.97858196  DT.99983438 

    Selected AceView cDNA sequences (see all 58):

    BQ129377 BQ015489 BM470944 AI478941 BC010626 CR617868 CK823607 F10037 
    AW151274 T12597 NM_138424 AW070898 BQ129240 BI829900 BC036824 F12420 
    BI488664 BU078740 BF431249 BU732639 BX452373 AA293123 H61902 AL531520 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for KIF12 (see all 8)    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^
    SP1:                                -     -     -                                                                                               -               
    SP2:                                                                          -                                                                                 
    SP3:                                                                          -           -                                   -                                 
    SP4:        -           -           -                                                                                                                           
    SP5:                                                                                                                          -                 -               

    ExUns: 18 ^ 19a · 19b
    SP1:                  
    SP2:                  
    SP3:                  
    SP4:                  
    SP5:                  


    ECgene alternative splicing isoforms for KIF12

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    KIF12 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AATAAAGAGA
    KIF12 Expression
    About this image


    KIF12 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     
     Kidney (Urinary System)    fully expand to see all 2 entries
             Ureteric Bud Cells Ureteric Bud
    KIF12 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    KIF12 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.28149

    UniProtKB/Swiss-Prot: KIF12_HUMAN, Q96FN5
    Tissue specificity: Expressed in fetal liver, adult brain and pancreatic islet as well as in kidney tumors, uterus
    cancer and pancreatic cancer

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals and fungi.

    Orthologs for KIF12 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Kif121 , 5 kinesin family member 121, 5 81.88(n)1
    79.64(a)1
      4 (33.96 cM)5
    165521  NM_010616.21  NP_034746.11 
     631656345 
    chicken
    (Gallus gallus)
    Aves KIF126
    kinesin family member 12
    29(a)
    1 ↔ 1
    19(5637919-5639311)
    fruit fly
    (Drosophila melanogaster)
    Insecta Klp54D1 Kinesin-like protein at 54D 53.52(n)
    45.43(a)
      47216  NM_080144.2  NP_524883.2 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes KIP26
    Kinesin-related motor protein involved in mitotic ...
    15(a)
    1 ↔ 1
    XVI(257216-259336) YPL155C


    ENSEMBL Gene Tree for KIF12 (if available)
    TreeFam Gene Tree for KIF12 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for KIF12 gene
    8 SIMAP similar genes for KIF12 using alignment to 3 protein entries:     KIF12_HUMAN (see all proteins):
    KIF5C    KIF6    KIF1A    KIF5B    KIF2C    KIF5A
    KIF3A    KIF21A

    Find genes that share paralogs with KIF12           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for KIF12 (see all 315)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 9 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1390227041,2
    --116853474(+) CTCACA/GCCTAG 1 -- int10--------
    rs713677461,2
    C--116853572(-) TTTTT-/TTAGTAG 1 -- int11Minor allele frequency- TT:0.00NA 2
    rs1857095051,2
    --116853612(+) GTGGTG/TGCGTG 1 -- int10--------
    rs1890172311,2
    C--116853615(+) GTGGCA/G/TTGTGC 1 -- int10--------
    rs1415521071,2
    C--116853659(+) GAGAAC/TCGCTT 1 -- int10--------
    rs109820631,2
    C,F--116853660(+) AGAATC/TGCTTG 1 -- int15Minor allele frequency- T:0.44NA CSA 9
    rs1392436651,2
    --116853726(+) GGTGAC/TAAAGC 1 -- int10--------
    rs1500165751,2
    C--116853740(+) ACTCCA/GTCTCA 1 -- int10--------
    rs1127273751,2
    C--116853747(+) TCAAA-/AAAAC/A
    AAACAAAAC
    AAAAC
    1 -- int11CSA 2
    rs339668891,2
    C--116853748(+) CAAAA-/AAAA  
      CAAAAC
    AAACA
    1 -- int10--------

    HapMap Linkage Disequilibrium report for KIF12 (116848406 - 116861507 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for KIF12:    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv33e196CNV Duplication17116639
    nsv893751CNV Loss21882294
    nsv893750CNV Loss21882294
    nsv471319CNV Gain18288195
    dgv945n27CNV Gain19166990
    nsv528822CNV Gain19592680
    nsv515856CNV Gain+Loss19592680

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 611278    OMIM disorders: --


    Find genes that share disorders with KIF12           About GenesLikeMe

    Human Genome Epidemiology (HuGE) Navigator: KIF12 (1 document)

    Export disorders for KIF12 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for KIF12 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with KIF12)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Characterization of KIF12 gene in silico. (PubMed id 15643526)1, 2, 9 Katoh M. and Katoh M. (Oncol. Rep. 2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)1, 2 Humphray S.J.... Dunham I. (Nature 2004)
    4. Genome-wide association study of Tourette's syndrome. (PubMed id 22889924)1 Scharf J.M....Pauls D.L. (Mol. Psychiatry 2013)
    5. New genetic associations detected in a host response study to hepatitis B vaccine. (PubMed id 20237496)1 Davila S....Seielstad M. (Genes Immun. 2010)
    6. Large-scale proteomics and phosphoproteomics of urinary exosomes. (PubMed id 19056867)1 Gonzales P.A....Knepper M.A. (J. Am. Soc. Nephrol. 2009)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    8. Identification and classification of 16 new kinesin superfamily (KIF) proteins in mouse genome. (PubMed id 9275178)1 Nakagawa T....Hirokawa N. (Proc. Natl. Acad. Sci. U.S.A. 1997)
    9. Functional analysis of human microtubule-based motor proteins, the kinesins and dyneins, in mitosis/cytokinesis using RNA interference. (PubMed id 15843429)9 Zhu C.... Jiang W. (Mol. Biol. Cell 2005)
    10. Kif15 cooperates with eg5 to promote bipolar spindle assembly. (PubMed id 19818618)9 Tanenbaum M.E....Medema R.H. (Curr. Biol. 2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
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      Query String
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 113220 HGNC: 21495 AceView: KIF12 Ensembl:ENSG00000136883 euGenes: HUgn113220
    ECgene: KIF12 H-InvDB: KIF12

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for KIF12 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for KIF12 gene:
    Search GeneIP for patents involving KIF12

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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