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Aliases for KIAA1407 Gene

Aliases for KIAA1407 Gene

  • KIAA1407 2 3

External Ids for KIAA1407 Gene

Previous GeneCards Identifiers for KIAA1407 Gene

  • GC03M110504
  • GC03M113253
  • GC03M114964
  • GC03M115003
  • GC03M115165
  • GC03M113682
  • GC03M111057

Summaries for KIAA1407 Gene

GeneCards Summary for KIAA1407 Gene

KIAA1407 (KIAA1407) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIAA1407 Gene

Genomics for KIAA1407 Gene

Regulatory Elements for KIAA1407 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for KIAA1407 Gene

Start:
113,964,137 bp from pter
End:
114,056,613 bp from pter
Size:
92,477 bases
Orientation:
Minus strand

Genomic View for KIAA1407 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KIAA1407 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIAA1407 Gene

Proteins for KIAA1407 Gene

  • Protein details for KIAA1407 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NCU4-K1407_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein KIAA1407
    Protein Accession:
    Q8NCU4
    Secondary Accessions:
    • B4DYL1
    • Q9P2E0

    Protein attributes for KIAA1407 Gene

    Size:
    936 amino acids
    Molecular mass:
    110568 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for KIAA1407 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for KIAA1407 Gene

Proteomics data for KIAA1407 Gene at MOPED

Post-translational modifications for KIAA1407 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KIAA1407 Gene

No data available for DME Specific Peptides for KIAA1407 Gene

Domains for KIAA1407 Gene

Protein Domains for KIAA1407 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for KIAA1407 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KIAA1407: view

No data available for Gene Families and UniProtKB/Swiss-Prot for KIAA1407 Gene

Function for KIAA1407 Gene

Phenotypes for KIAA1407 Gene

genes like me logo Genes that share phenotypes with KIAA1407: view

Animal Model Products

CRISPR Products

miRNA for KIAA1407 Gene

miRTarBase miRNAs that target KIAA1407

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for KIAA1407 Gene

Localization for KIAA1407 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KIAA1407 Gene COMPARTMENTS Subcellular localization image for KIAA1407 gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for KIAA1407 Gene

Pathways for KIAA1407 Gene

SuperPathways for KIAA1407 Gene

No Data Available

Interacting Proteins for KIAA1407 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000295878%0d%0a9606.ENSP00000258947%0d%0a
Selected Interacting proteins: ENSP00000295878 Q8NCU4-K1407_HUMAN for KIAA1407 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for KIAA1407 Gene

None

No data available for Pathways by source for KIAA1407 Gene

Transcripts for KIAA1407 Gene

Unigene Clusters for KIAA1407 Gene

KIAA1407:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for KIAA1407

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for KIAA1407

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KIAA1407 Gene

No ASD Table

Relevant External Links for KIAA1407 Gene

GeneLoc Exon Structure for
KIAA1407
ECgene alternative splicing isoforms for
KIAA1407

Expression for KIAA1407 Gene

mRNA expression in normal human tissues for KIAA1407 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for KIAA1407 Gene

SOURCE GeneReport for Unigene cluster for KIAA1407 Gene Hs.477159

genes like me logo Genes that share expressions with KIAA1407: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for KIAA1407 Gene

Orthologs for KIAA1407 Gene

This gene was present in the common ancestor of animals.

Orthologs for KIAA1407 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KIAA1407 35
  • 99.18 (n)
  • 98.18 (a)
KIAA1407 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia KIAA1407 35
  • 86.42 (n)
  • 79.69 (a)
KIAA1407 36
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KIAA1407 35
  • 84.29 (n)
  • 76.38 (a)
KIAA1407 36
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2610015P09Rik 35
  • 79.44 (n)
  • 71.38 (a)
2610015P09Rik 16
2610015P09Rik 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia KIAA1407 36
  • 56 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KIAA1407 36
  • 42 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1566314 35
  • 78.72 (n)
  • 69.47 (a)
chicken
(Gallus gallus)
Aves KIAA1407 35
  • 58.98 (n)
  • 45.33 (a)
KIAA1407 36
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KIAA1407 36
  • 46 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia kiaa1407 35
  • 55.23 (n)
  • 45.98 (a)
zebrafish
(Danio rerio)
Actinopterygii zgc:92218 35
  • 48.32 (n)
  • 37.4 (a)
zgc:92218 36
  • 35 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG17258 36
  • 15 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 11 (a)
OneToOne
Species with no ortholog for KIAA1407:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for KIAA1407 Gene

ENSEMBL:
Gene Tree for KIAA1407 (if available)
TreeFam:
Gene Tree for KIAA1407 (if available)

Paralogs for KIAA1407 Gene

No data available for Paralogs for KIAA1407 Gene

Variants for KIAA1407 Gene

Sequence variations from dbSNP and Humsavar for KIAA1407 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs184449 -- 114,008,253(+) AGATA(A/G)AAGTC intron-variant
rs190126 -- 114,009,181(+) cctag(C/G)acatt intron-variant
rs324550 -- 114,039,093(-) tgcta(C/T)acttt intron-variant
rs324551 -- 114,038,775(-) cctgc(A/G)ttagt intron-variant
rs324552 -- 114,006,838(+) ATTTA(G/T)TTATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KIAA1407 Gene

Variant ID Type Subtype PubMed ID
nsv822222 CNV Loss 20364138
nsv877352 CNV Gain 21882294

Relevant External Links for KIAA1407 Gene

HapMap Linkage Disequilibrium report
KIAA1407

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KIAA1407 Gene

Disorders for KIAA1407 Gene

No disorders were found for KIAA1407 Gene.

No data available for UniProtKB/Swiss-Prot for KIAA1407 Gene

Publications for KIAA1407 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10718198) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Mapping a dynamic innate immunity protein interaction network regulating type I interferon production. (PMID: 21903422) Li S. … Dorf M.E. (Immunity 2011) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  5. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4

Products for KIAA1407 Gene

Sources for KIAA1407 Gene

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