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Aliases for KIAA1217 Gene

Aliases for KIAA1217 Gene

  • KIAA1217 2 3
  • SKT 3 4
  • Likely Orthologue Of Mus Musculus Enhancer Trap Locus 4 3
  • Sickle Tail Protein Homolog 3
  • Sickle Tail 2

External Ids for KIAA1217 Gene

Previous GeneCards Identifiers for KIAA1217 Gene

  • GC10P024502
  • GC10P024512
  • GC10P024538
  • GC10P024023

Summaries for KIAA1217 Gene

GeneCards Summary for KIAA1217 Gene

KIAA1217 (KIAA1217) is a Protein Coding gene.

UniProtKB/Swiss-Prot for KIAA1217 Gene

  • Required for normal development of intervertebral disks.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIAA1217 Gene

Genomics for KIAA1217 Gene

Regulatory Elements for KIAA1217 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for KIAA1217 Gene

Start:
23,694,746 bp from pter
End:
24,547,848 bp from pter
Size:
853,103 bases
Orientation:
Plus strand

Genomic View for KIAA1217 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KIAA1217 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIAA1217 Gene

Proteins for KIAA1217 Gene

  • Protein details for KIAA1217 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T5P2-SKT_HUMAN
    Recommended name:
    Sickle tail protein homolog
    Protein Accession:
    Q5T5P2
    Secondary Accessions:
    • A5LHW9
    • A6NLF3
    • A6PVQ5
    • A6PVQ6
    • A6PVQ7
    • B9EGK4
    • Q4KMG4
    • Q5T5P3
    • Q5T7H3
    • Q6MZZ6
    • Q6ZUI4
    • Q8WV45
    • Q9NSR2
    • Q9ULK3

    Protein attributes for KIAA1217 Gene

    Size:
    1943 amino acids
    Molecular mass:
    214116 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH18764.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AL833280; Type=Frameshift; Positions=976; Evidence={ECO:0000305}; Sequence=BAC86241.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAF63529.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAE45879.1; Type=Erroneous termination; Positions=1251; Note=Translated as Leu.; Evidence={ECO:0000305}; Sequence=CAI12212.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI14084.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI40182.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for KIAA1217 Gene

neXtProt entry for KIAA1217 Gene

Proteomics data for KIAA1217 Gene at MOPED

Post-translational modifications for KIAA1217 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for KIAA1217 Gene

Domains for KIAA1217 Gene

Protein Domains for KIAA1217 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for KIAA1217 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KIAA1217: view

No data available for Gene Families and UniProtKB/Swiss-Prot for KIAA1217 Gene

Function for KIAA1217 Gene

Molecular function for KIAA1217 Gene

GENATLAS Biochemistry: murine PI40 homolog
UniProtKB/Swiss-Prot Function: Required for normal development of intervertebral disks.

Gene Ontology (GO) - Molecular Function for KIAA1217 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with KIAA1217: view
genes like me logo Genes that share phenotypes with KIAA1217: view

Animal Model Products

CRISPR Products

miRNA for KIAA1217 Gene

miRTarBase miRNAs that target KIAA1217

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for KIAA1217

Clone Products

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for KIAA1217 Gene

Localization for KIAA1217 Gene

Subcellular locations from UniProtKB/Swiss-Prot for KIAA1217 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KIAA1217 Gene COMPARTMENTS Subcellular localization image for KIAA1217 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for KIAA1217 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm ISS --
genes like me logo Genes that share ontologies with KIAA1217: view

Pathways for KIAA1217 Gene

SuperPathways for KIAA1217 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KIAA1217 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0048706 embryonic skeletal system development ISS --
genes like me logo Genes that share ontologies with KIAA1217: view

No data available for Pathways by source for KIAA1217 Gene

Transcripts for KIAA1217 Gene

Unigene Clusters for KIAA1217 Gene

KIAA1217:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for KIAA1217

Clone Products

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for KIAA1217

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KIAA1217 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19a · 19b ^ 20 ^
SP1: - - - - - - -
SP2: - - - - - - -
SP3: - -
SP4: - - - -
SP5: - -
SP6: - -
SP7: - - - - - - - -
SP8: - - - - - -
SP9: - -
SP10: -
SP11: - -
SP12:

ExUns: 21 ^ 22a · 22b ^ 23a · 23b ^ 24a · 24b · 24c ^ 25
SP1: - - -
SP2: - - - - - - -
SP3: -
SP4: - - -
SP5: - - - -
SP6: - - - - -
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

Relevant External Links for KIAA1217 Gene

GeneLoc Exon Structure for
KIAA1217
ECgene alternative splicing isoforms for
KIAA1217

Expression for KIAA1217 Gene

mRNA expression in normal human tissues for KIAA1217 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for KIAA1217 Gene

This gene is overexpressed in Muscle - Skeletal (7.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for KIAA1217 Gene

SOURCE GeneReport for Unigene cluster for KIAA1217 Gene Hs.445885

genes like me logo Genes that share expressions with KIAA1217: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for KIAA1217 Gene

Orthologs for KIAA1217 Gene

This gene was present in the common ancestor of animals.

Orthologs for KIAA1217 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KIAA1217 35
  • 99.13 (n)
  • 98.91 (a)
KIAA1217 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia KIAA1217 35
  • 84.67 (n)
  • 83.37 (a)
KIAA1217 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KIAA1217 35
  • 85.34 (n)
  • 84.8 (a)
KIAA1217 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Etl4 35
  • 83.21 (n)
  • 82.24 (a)
Etl4 16
Etl4 36
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia KIAA1217 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KIAA1217 36
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Etl4 35
  • 82.37 (n)
  • 81.23 (a)
chicken
(Gallus gallus)
Aves KIAA1217 35
  • 69.7 (n)
  • 68.41 (a)
KIAA1217 36
  • 64 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 56 (a)
OneToMany
-- 36
  • 68 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia Xl.18277 35
tropical clawed frog
(Silurana tropicalis)
Amphibia kiaa1217 35
  • 62.3 (n)
  • 58.87 (a)
Str.6301 35
zebrafish
(Danio rerio)
Actinopterygii si:ch211-207d6.2 36
  • 41 (a)
OneToMany
si:ch211-285f17.1 35
  • 56.56 (n)
  • 52.39 (a)
si:ch211-285f17.1 36
  • 44 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG32809 36
  • 19 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea Y71H2AM.15 36
  • 18 (a)
OneToMany
Species with no ortholog for KIAA1217:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for KIAA1217 Gene

ENSEMBL:
Gene Tree for KIAA1217 (if available)
TreeFam:
Gene Tree for KIAA1217 (if available)

Paralogs for KIAA1217 Gene

Selected SIMAP similar genes for KIAA1217 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with KIAA1217: view

No data available for Paralogs for KIAA1217 Gene

Variants for KIAA1217 Gene

Sequence variations from dbSNP and Humsavar for KIAA1217 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs17454 -- 24,440,560(-) TCGAT(A/T)CTCTC intron-variant
rs121126 -- 24,302,529(-) actga(A/G)taaat intron-variant
rs170202 -- 24,364,312(-) TATAC(C/G)ATAGA intron-variant
rs170203 -- 24,361,784(-) GTTAG(C/T)CCGGA intron-variant
rs170204 -- 24,304,206(-) AAAAA(A/G)GGTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KIAA1217 Gene

Variant ID Type Subtype PubMed ID
nsv894967 CNV Loss 21882294
nsv894968 CNV Loss 21882294
nsv6054 CNV Insertion 18451855
esv2734062 CNV Deletion 23290073
esv2673562 CNV Deletion 23128226
esv2531113 CNV Deletion 19546169
nsv825306 CNV Loss 20364138
nsv6065 CNV Insertion 18451855
dgv139n67 CNV Gain 20364138
nsv442172 CNV CNV 18776908
nsv6077 CNV Loss 18451855
nsv6088 CNV Insertion 18451855
esv2658343 CNV Deletion 23128226
esv273968 CNV Insertion 20981092
esv268602 CNV Insertion 20981092
nsv24699 CNV Loss 16902084
nsv437661 CNV Loss 16327808
nsv512152 CNV Loss 21212237
esv2664058 CNV Deletion 23128226
esv2734073 CNV Deletion 23290073
nsv442572 CNV CNV 18776908
nsv25425 CNV Loss 16902084
nsv520378 CNV Loss 19592680
esv2658496 CNV Deletion 23128226
nsv517235 CNV Loss 19592680
esv2673016 CNV Deletion 23128226
esv2666654 CNV Deletion 23128226
nsv466836 CNV Loss 19166990
esv2540928 CNV Deletion 19546169
nsv7200 OTHER Inversion 18451855
nsv819511 CNV Gain 19587683
esv2734084 CNV Deletion 23290073

Relevant External Links for KIAA1217 Gene

HapMap Linkage Disequilibrium report
KIAA1217
Human Gene Mutation Database (HGMD)
KIAA1217

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KIAA1217 Gene

Disorders for KIAA1217 Gene

Relevant External Links for KIAA1217

Genetic Association Database (GAD)
KIAA1217
Human Genome Epidemiology (HuGE) Navigator
KIAA1217
genes like me logo Genes that share disorders with KIAA1217: view

No data available for UniProtKB/Swiss-Prot for KIAA1217 Gene

Publications for KIAA1217 Gene

  1. Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10574462) Nagase T. … Ohara O. (DNA Res. 1999) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Association of the tag SNPs in the human SKT gene (KIAA1217) with lumbar disc herniation. (PMID: 19338451) Karasugi T. … Ikegawa S. (J. Bone Miner. Res. 2009) 3 48
  4. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3 48
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48

Products for KIAA1217 Gene

Sources for KIAA1217 Gene

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