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Aliases for KIAA0556 Gene

Aliases for KIAA0556 Gene

  • KIAA0556 2 3

External Ids for KIAA0556 Gene

Summaries for KIAA0556 Gene

GeneCards Summary for KIAA0556 Gene

KIAA0556 (KIAA0556) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KIAA0556 Gene

Genomics for KIAA0556 Gene

Genomic Location for KIAA0556 Gene

Start:
27,550,120 bp from pter
End:
27,780,371 bp from pter
Size:
230,252 bases
Orientation:
Plus strand

Genomic View for KIAA0556 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KIAA0556 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KIAA0556 Gene

Regulatory Elements for KIAA0556 Gene

Proteins for KIAA0556 Gene

  • Protein details for KIAA0556 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O60303-K0556_HUMAN
    Recommended name:
    Uncharacterized protein KIAA0556
    Protein Accession:
    O60303
    Secondary Accessions:
    • A7E2C2

    Protein attributes for KIAA0556 Gene

    Size:
    1618 amino acids
    Molecular mass:
    180918 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA25482.2; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for KIAA0556 Gene

Proteomics data for KIAA0556 Gene at MOPED

Post-translational modifications for KIAA0556 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KIAA0556 Gene

No data available for DME Specific Peptides for KIAA0556 Gene

Domains for KIAA0556 Gene

Protein Domains for KIAA0556 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with KIAA0556: view

No data available for Gene Families and UniProtKB/Swiss-Prot for KIAA0556 Gene

Function for KIAA0556 Gene

Phenotypes for KIAA0556 Gene

GenomeRNAi human phenotypes for KIAA0556:
genes like me logo Genes that share phenotypes with KIAA0556: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for KIAA0556 Gene

Localization for KIAA0556 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KIAA0556 Gene COMPARTMENTS Subcellular localization image for KIAA0556 gene
Compartment Confidence
nucleus 4
plasma membrane 4
cytosol 2

Gene Ontology (GO) - Cellular Components for KIAA0556 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 22664934
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with KIAA0556: view

Pathways for KIAA0556 Gene

SuperPathways for KIAA0556 Gene

No Data Available

Interacting Proteins for KIAA0556 Gene

Gene Ontology (GO) - Biological Process for KIAA0556 Gene

None

No data available for Pathways by source for KIAA0556 Gene

Transcripts for KIAA0556 Gene

Unigene Clusters for KIAA0556 Gene

KIAA0556:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KIAA0556 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b · 14c ^ 15 ^ 16 ^ 17 ^ 18 ^
SP1: - - - - -
SP2:
SP3: - -
SP4: - - -
SP5: -
SP6: - -

ExUns: 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:

Relevant External Links for KIAA0556 Gene

GeneLoc Exon Structure for
KIAA0556
ECgene alternative splicing isoforms for
KIAA0556

Expression for KIAA0556 Gene

mRNA expression in normal human tissues for KIAA0556 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for KIAA0556 Gene

SOURCE GeneReport for Unigene cluster for KIAA0556 Gene Hs.460459

genes like me logo Genes that share expressions with KIAA0556: view

Orthologs for KIAA0556 Gene

This gene was present in the common ancestor of animals.

Orthologs for KIAA0556 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KIAA0556 36
  • 99.16 (n)
  • 98.83 (a)
KIAA0556 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia KIAA0556 37
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KIAA0556 36
  • 83.72 (n)
  • 79.39 (a)
KIAA0556 37
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia D430042O09Rik 36
  • 78.63 (n)
  • 73.52 (a)
D430042O09Rik 16
D430042O09Rik 37
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia KIAA0556 37
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KIAA0556 37
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC361646 36
  • 78.37 (n)
  • 73.57 (a)
chicken
(Gallus gallus)
Aves KIAA0556 36
  • 60.79 (n)
  • 55.5 (a)
KIAA0556 37
  • 53 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KIAA0556 37
  • 49 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.29814 36
tropical clawed frog
(Silurana tropicalis)
Amphibia kiaa0556 36
  • 55.5 (n)
  • 51.86 (a)
zebrafish
(Danio rerio)
Actinopterygii Dr.16016 36
LOC557457 36
  • 53.89 (n)
  • 50.75 (a)
si:dkey-161j23.5 37
  • 33 (a)
OneToMany
si:dkey-161j23.6 37
  • 46 (a)
OneToMany
si:dkey-161j23.7 37
  • 67 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea K04F10.2 36
  • 45.66 (n)
  • 36.79 (a)
K04F10.2 37
  • 34 (a)
OneToOne
K04F10.2 38
  • 32 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 48 (a)
OneToOne
Species with no ortholog for KIAA0556:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for KIAA0556 Gene

ENSEMBL:
Gene Tree for KIAA0556 (if available)
TreeFam:
Gene Tree for KIAA0556 (if available)

Paralogs for KIAA0556 Gene

No data available for Paralogs for KIAA0556 Gene

Variants for KIAA0556 Gene

Sequence variations from dbSNP and Humsavar for KIAA0556 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs233452 -- 27,630,530(+) GCAAA(G/T)AGGGA intron-variant
rs233453 -- 27,630,928(+) CAACC(A/G)CGCTG intron-variant
rs233454 -- 27,632,752(+) tcttt(C/T)ttttt intron-variant
rs233455 -- 27,633,206(+) gggtt(C/G)attca intron-variant
rs233456 -- 27,634,943(+) gtgtt(C/T)ttaag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KIAA0556 Gene

Variant ID Type Subtype PubMed ID
esv2751555 CNV Gain 17911159
nsv1774 CNV Insertion 18451855
esv1205043 CNV Insertion 17803354
esv1009779 CNV Insertion 20482838

Relevant External Links for KIAA0556 Gene

HapMap Linkage Disequilibrium report
KIAA0556

Disorders for KIAA0556 Gene

No disorders were found for KIAA0556 Gene.

No data available for UniProtKB/Swiss-Prot for KIAA0556 Gene

Publications for KIAA0556 Gene

  1. Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9628581) Nagase T. … Ohara O. (DNA Res. 1998) 2 3 4
  2. Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs. (PMID: 12421765) Nakayama M. … Ohara O. (Genome Res. 2002) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for KIAA0556 Gene

Sources for KIAA0556 Gene

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