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Aliases for KDM5C-IT1 Gene

Subcategory (RNA class) for KDM5C-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KDM5C-IT1 Gene

  • KDM5C Intronic Transcript 1 2 3 5
  • KDM5C Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KDM5C-IT1 Gene

Previous GeneCards Identifiers for KDM5C-IT1 Gene

  • GC00U933046

Summaries for KDM5C-IT1 Gene

GeneCards Summary for KDM5C-IT1 Gene

KDM5C-IT1 (KDM5C Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KDM5C-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KDM5C-IT1 Gene

Genomics for KDM5C-IT1 Gene

Regulatory Elements for KDM5C-IT1 Gene

Enhancers for KDM5C-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH052994 1.3 ENCODE dbSUPER 11.5 +219.3 219305 2 PKNOX1 ATF1 ARNT ARID4B SIN3A FEZF1 BRCA1 YY1 ZNF143 ZNF207 FAM156A SMC1A KDM5C FAM156B ENSG00000233250 ACTG1P10 KDM5C-IT1 HUWE1 GC0XP052962
GH0XH054042 1.1 ENCODE 13.2 -829.7 -829713 3 PKNOX1 FOXA2 ARNT SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 ZNF143 KDM5C PHF8 ACTG1P10 SMC1A ENSG00000233250 TSPYL2 APEX2 GPR173 KANTR MAGED2
GH0XH053093 1 ENCODE 12.9 +120.5 120540 2 PKNOX1 ATF1 ARID4B SIN3A DMAP1 YY1 GTF3C2 GLIS2 ELK1 ZNF143 ACTG1P10 FAM156B KDM5C PHF8 KDM5C-IT1 ENSG00000233250 SMC1A KANTR TSPYL2
GH0XH053726 0.9 Ensembl ENCODE 12.8 -512.3 -512314 1 TBP JUN ZNF175 CEBPB CEBPG EP300 FOSL1 GTF3C2 ZNF589 JUND KDM5C PHF8 ACTG1P10 KDM5C-IT1 FAM156B ENSG00000233250 SMC1A GNL3L RIBC1 GC0XM053749
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KDM5C-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KDM5C-IT1 Gene

Chromosome:
X
Start:
53,212,408 bp from pter
End:
53,214,679 bp from pter
Size:
2,272 bases
Orientation:
Minus strand

Genomic View for KDM5C-IT1 Gene

Genes around KDM5C-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KDM5C-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KDM5C-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for KDM5C-IT1 Gene

Proteins for KDM5C-IT1 Gene

Post-translational modifications for KDM5C-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KDM5C-IT1 Gene

Domains & Families for KDM5C-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KDM5C-IT1 Gene

Function for KDM5C-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for KDM5C-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KDM5C-IT1 Gene

Localization for KDM5C-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KDM5C-IT1 Gene

Pathways & Interactions for KDM5C-IT1 Gene

SuperPathways for KDM5C-IT1 Gene

No Data Available

Interacting Proteins for KDM5C-IT1 Gene

Gene Ontology (GO) - Biological Process for KDM5C-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KDM5C-IT1 Gene

Drugs & Compounds for KDM5C-IT1 Gene

No Compound Related Data Available

Transcripts for KDM5C-IT1 Gene

mRNA/cDNA for KDM5C-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for KDM5C-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for KDM5C-IT1 Gene

No ASD Table

Relevant External Links for KDM5C-IT1 Gene

GeneLoc Exon Structure for
KDM5C-IT1
ECgene alternative splicing isoforms for
KDM5C-IT1

Expression for KDM5C-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KDM5C-IT1 Gene

genes like me logo Genes that share expression patterns with KDM5C-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KDM5C-IT1 Gene

Orthologs for KDM5C-IT1 Gene

Evolution for KDM5C-IT1 Gene

ENSEMBL:
Gene Tree for KDM5C-IT1 (if available)
TreeFam:
Gene Tree for KDM5C-IT1 (if available)

No data available for Orthologs for KDM5C-IT1 Gene

Paralogs for KDM5C-IT1 Gene

No data available for Paralogs for KDM5C-IT1 Gene

Variants for KDM5C-IT1 Gene

Relevant External Links for KDM5C-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KDM5C-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KDM5C-IT1 Gene

Disorders for KDM5C-IT1 Gene

No disorders were found for KDM5C-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KDM5C-IT1 Gene

Publications for KDM5C-IT1 Gene

No publications were found for KDM5C-IT1 Gene.

Products for KDM5C-IT1 Gene

Sources for KDM5C-IT1 Gene

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