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Aliases for KDM4A-AS1 Gene

Subcategory (RNA class) for KDM4A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KDM4A-AS1 Gene

  • KDM4A Antisense RNA 1 2 3 5
  • KDM4A Antisense RNA 1 (Non-Protein Coding) 2

External Ids for KDM4A-AS1 Gene

Previous GeneCards Identifiers for KDM4A-AS1 Gene

  • GC01M044167

Summaries for KDM4A-AS1 Gene

GeneCards Summary for KDM4A-AS1 Gene

KDM4A-AS1 (KDM4A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KDM4A-AS1 Gene

Genomics for KDM4A-AS1 Gene

Regulatory Elements for KDM4A-AS1 Gene

Enhancers for KDM4A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F044628 1.1 ENCODE 19.5 -923.3 -923342 6.6 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 DMAP1 TOE1 KDM4A RPS8 KDM4A-AS1 C1orf228 ZSWIM5 RNU5F-1 ERI3 RNF220
GH01F043539 1.7 FANTOM5 Ensembl ENCODE 10.7 +160.7 160655 15.4 ARNT MLX ZFP64 ARID4B FEZF1 DMAP1 YY1 SLC30A9 ZNF143 DEK LOC101929592 PTPRF MED8 SZT2 ST3GAL3 KDM4A-AS1 IPO13 LOC101929609 HYI DPH2
GH01F044261 1.7 FANTOM5 Ensembl ENCODE 9.9 -555.1 -555050 4.0 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 YBX1 ZNF2 ZNF143 KLF13 DMAP1 KDM4A ERI3 KDM4A-AS1 SZT2 ATP6V0B ERI3-IT1 GC01P044290
GH01F043525 1.3 Ensembl ENCODE 11 +181.8 181797 1.0 ATF1 CREB3L1 ARID4B SIN3A ZNF48 YY1 GLIS2 ZNF766 ELK1 KLF7 ST3GAL3 KDM4A-AS1 ARTN IPO13 LOC101929609 MED8 PTPRF GC01M043545
GH01F043529 1.3 FANTOM5 ENCODE 11 +174.2 174222 8.9 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 ZNF121 GLIS2 ZNF143 KDM4A-AS1 ST3GAL3 ARTN IPO13 LOC101929609 PTPRF HYI MED8 GC01M043545
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KDM4A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KDM4A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000076794 438 2201 HDGF CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FOS

Genomic Location for KDM4A-AS1 Gene

Chromosome:
1
Start:
43,699,724 bp from pter
End:
43,708,138 bp from pter
Size:
8,415 bases
Orientation:
Minus strand

Genomic View for KDM4A-AS1 Gene

Genes around KDM4A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KDM4A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KDM4A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KDM4A-AS1 Gene

Proteins for KDM4A-AS1 Gene

Post-translational modifications for KDM4A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KDM4A-AS1 Gene

Domains & Families for KDM4A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KDM4A-AS1 Gene

Function for KDM4A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KDM4A-AS1 Gene

Localization for KDM4A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KDM4A-AS1 Gene

Pathways & Interactions for KDM4A-AS1 Gene

SuperPathways for KDM4A-AS1 Gene

No Data Available

Interacting Proteins for KDM4A-AS1 Gene

Gene Ontology (GO) - Biological Process for KDM4A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KDM4A-AS1 Gene

Transcripts for KDM4A-AS1 Gene

mRNA/cDNA for KDM4A-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KDM4A-AS1 Gene

KDM4A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KDM4A-AS1 Gene

No ASD Table

Relevant External Links for KDM4A-AS1 Gene

GeneLoc Exon Structure for
KDM4A-AS1
ECgene alternative splicing isoforms for
KDM4A-AS1

Expression for KDM4A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KDM4A-AS1 Gene

SOURCE GeneReport for Unigene cluster for KDM4A-AS1 Gene:

Hs.655569
genes like me logo Genes that share expression patterns with KDM4A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KDM4A-AS1 Gene

Orthologs for KDM4A-AS1 Gene

Evolution for KDM4A-AS1 Gene

ENSEMBL:
Gene Tree for KDM4A-AS1 (if available)
TreeFam:
Gene Tree for KDM4A-AS1 (if available)

No data available for Orthologs for KDM4A-AS1 Gene

Paralogs for KDM4A-AS1 Gene

No data available for Paralogs for KDM4A-AS1 Gene

Variants for KDM4A-AS1 Gene

Sequence variations from dbSNP and Humsavar for KDM4A-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1057125 -- 43,705,482(+) GCATC(A/C)CCTTG intron-variant, utr-variant-3-prime
rs111780781 -- 43,701,060(+) TGCGA(C/T)TACAG intron-variant
rs112231124 -- 43,701,057(+) AGCTG(C/T)GACTA intron-variant
rs112297569 -- 43,700,550(+) TTGCT(C/T)TGTTG intron-variant, nc-transcript-variant
rs112304296 -- 43,706,719(+) ACCTC(-/AAG)AGAAC intron-variant, upstream-variant-2KB

Relevant External Links for KDM4A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KDM4A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KDM4A-AS1 Gene

Disorders for KDM4A-AS1 Gene

Relevant External Links for KDM4A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KDM4A-AS1

No disorders were found for KDM4A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KDM4A-AS1 Gene

Publications for KDM4A-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for KDM4A-AS1 Gene

Sources for KDM4A-AS1 Gene

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