Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KCTD6 Gene

Aliases for KCTD6 Gene

  • Potassium Channel Tetramerization Domain Containing 6 2 3
  • Potassium Channel Tetramerisation Domain Containing 6 2 3
  • BTB/POZ Domain-Containing Protein KCTD6 3
  • KCASH3 3

External Ids for KCTD6 Gene

Summaries for KCTD6 Gene

GeneCards Summary for KCTD6 Gene

KCTD6 (Potassium Channel Tetramerization Domain Containing 6) is a Protein Coding gene. Among its related pathways are Activation of cAMP-Dependent PKA and Activation of cAMP-Dependent PKA. An important paralog of this gene is KCTD11.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCTD6 Gene

Genomics for KCTD6 Gene

Genomic Location for KCTD6 Gene

Start:
58,492,096 bp from pter
End:
58,502,360 bp from pter
Size:
10,265 bases
Orientation:
Plus strand

Genomic View for KCTD6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KCTD6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCTD6 Gene

Regulatory Elements for KCTD6 Gene

Proteins for KCTD6 Gene

  • Protein details for KCTD6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NC69-KCTD6_HUMAN
    Recommended name:
    BTB/POZ domain-containing protein KCTD6
    Protein Accession:
    Q8NC69
    Secondary Accessions:
    • B3KNI5
    • Q8NBS6
    • Q8TCA6

    Protein attributes for KCTD6 Gene

    Size:
    237 amino acids
    Molecular mass:
    27610 Da
    Quaternary structure:
    No Data Available

neXtProt entry for KCTD6 Gene

Proteomics data for KCTD6 Gene at MOPED

Post-translational modifications for KCTD6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for KCTD6 Gene

No data available for DME Specific Peptides for KCTD6 Gene

Domains for KCTD6 Gene

Protein Domains for KCTD6 Gene

UniProtKB/Swiss-Prot:

KCTD6_HUMAN
Domain:
  • Contains 1 BTB (POZ) domain.:
    • Q8NC69
genes like me logo Genes that share domains with KCTD6: view

No data available for Gene Families for KCTD6 Gene

Function for KCTD6 Gene

Gene Ontology (GO) - Molecular Function for KCTD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0030506 ankyrin binding IDA 22573887
genes like me logo Genes that share ontologies with KCTD6: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for KCTD6 Gene

Localization for KCTD6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KCTD6 Gene COMPARTMENTS Subcellular localization image for KCTD6 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for KCTD6 Gene

Pathways for KCTD6 Gene

genes like me logo Genes that share pathways with KCTD6: view

Gene Ontology (GO) - Biological Process for KCTD6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0051260 protein homooligomerization IEA --
genes like me logo Genes that share ontologies with KCTD6: view

Transcripts for KCTD6 Gene

Unigene Clusters for KCTD6 Gene

Potassium channel tetramerisation domain containing 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KCTD6 Gene

No ASD Table

Relevant External Links for KCTD6 Gene

GeneLoc Exon Structure for
KCTD6
ECgene alternative splicing isoforms for
KCTD6

Expression for KCTD6 Gene

mRNA expression in normal human tissues for KCTD6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for KCTD6 Gene

SOURCE GeneReport for Unigene cluster for KCTD6 Gene Hs.13982

genes like me logo Genes that share expressions with KCTD6: view

Orthologs for KCTD6 Gene

This gene was present in the common ancestor of chordates.

Orthologs for KCTD6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KCTD6 36
  • 100 (n)
  • 100 (a)
KCTD6 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia KCTD6 36
  • 92.97 (n)
  • 99.58 (a)
KCTD6 37
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KCTD6 36
  • 95.22 (n)
  • 100 (a)
KCTD6 37
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Kctd6 36
  • 88.75 (n)
  • 99.16 (a)
Kctd6 16
Kctd6 37
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia KCTD6 37
  • 98 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KCTD6 37
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Kctd6 36
  • 89.03 (n)
  • 99.58 (a)
chicken
(Gallus gallus)
Aves KCTD6 36
  • 82.98 (n)
  • 97.89 (a)
KCTD6 37
  • 98 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KCTD6 37
  • 97 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia kctd6 36
  • 80.31 (n)
  • 94.94 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.12176 36
zebrafish
(Danio rerio)
Actinopterygii Dr.19982 36
kctd6a 36
  • 75.39 (n)
  • 86.92 (a)
kctd6a 37
  • 87 (a)
OneToMany
kctd6b 37
  • 90 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 26 (a)
OneToMany
Species with no ortholog for KCTD6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for KCTD6 Gene

ENSEMBL:
Gene Tree for KCTD6 (if available)
TreeFam:
Gene Tree for KCTD6 (if available)

Paralogs for KCTD6 Gene

Paralogs for KCTD6 Gene

Selected SIMAP similar genes for KCTD6 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for KCTD6 Gene

genes like me logo Genes that share paralogs with KCTD6: view

Variants for KCTD6 Gene

Sequence variations from dbSNP and Humsavar for KCTD6 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs4368517 -- 58,498,261(+) TAGGC(A/G)TGAGC intron-variant, upstream-variant-2KB
rs4681686 -- 58,491,553(+) ATAAC(C/T)TGTCA upstream-variant-2KB
rs4681687 -- 58,495,990(+) CATTG(A/G)TGTCT intron-variant, upstream-variant-2KB
rs4681688 -- 58,496,164(+) AACCC(A/G)TTATG intron-variant, upstream-variant-2KB
rs5849258 -- 58,496,132(+) TTGGT(-/G)GGGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KCTD6 Gene

Variant ID Type Subtype PubMed ID
nsv876831 CNV Gain 21882294
esv24287 CNV Loss 19812545

Relevant External Links for KCTD6 Gene

HapMap Linkage Disequilibrium report
KCTD6
Human Gene Mutation Database (HGMD)
KCTD6

Disorders for KCTD6 Gene

(1) University of Copenhagen DISEASES for KCTD6 Gene

genes like me logo Genes that share disorders with KCTD6: view

No data available for UniProtKB/Swiss-Prot for KCTD6 Gene

Publications for KCTD6 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4
  4. Identification and characterization of KCASH2 and KCASH3, 2 novel Cullin3 adaptors suppressing histone deacetylase and Hedgehog activity in medulloblastoma. (PMID: 21472142) De Smaele E. … Gulino A. (Neoplasia 2011) 2 3
  5. Obscurin and KCTD6 regulate cullin-dependent small ankyrin-1 (sAnk1.5) protein turnover. (PMID: 22573887) Lange S. … Chen J. (Mol. Biol. Cell 2012) 3

Products for KCTD6 Gene

Sources for KCTD6 Gene

Back to Top

Content