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Aliases for KCTD21-AS1 Gene

Subcategory (RNA class) for KCTD21-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCTD21-AS1 Gene

  • KCTD21 Antisense RNA 1 2 3 5

External Ids for KCTD21-AS1 Gene

Previous GeneCards Identifiers for KCTD21-AS1 Gene

  • GC11P077854

Summaries for KCTD21-AS1 Gene

GeneCards Summary for KCTD21-AS1 Gene

KCTD21-AS1 (KCTD21 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCTD21-AS1 Gene

Genomics for KCTD21-AS1 Gene

Regulatory Elements for KCTD21-AS1 Gene

Enhancers for KCTD21-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G078138 1.1 ENCODE 75.6 0.0 -5 2.6 PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 KCTD21-AS1 KCTD21 USP35 THRSP INTS4 ALG8
GH11G078036 1.7 FANTOM5 Ensembl ENCODE 41 -100.4 -100446 5.6 HDGF FOXA2 MLX ARNT ARID4B YBX1 ZNF2 YY1 ZNF302 ZNF548 KCTD21-AS1 RSF1 ENSG00000255449 RPL21P95 LOC101928865 NDUFC2 ALG8 KCTD14 ENSG00000254675
GH11G078082 0.9 ENCODE 68.8 -54.5 -54486 4.6 FOXA2 MLX ARID4B ZNF48 SP5 MIER2 PPARG MIER3 RCOR2 ETV4 KCTD21-AS1 THRSP KCTD14 ENSG00000254829 INTS4 NDUFC2 ALG8 AAMDC LOC105369401 GC11P078094
GH11G078185 2 FANTOM5 Ensembl ENCODE dbSUPER 25.7 +48.1 48105 5.4 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 SP3 TBX21 ZFP41 KCTD21-AS1 RSF1 ALG8 USP35 INTS4 PIR40351
GH11G078044 1 ENCODE 45.9 -94.2 -94215 2.7 HDGF ATF1 ARID4B SIN3A ZNF2 ZNF48 SLC30A9 ZNF143 KDM4B ZNF263 KCTD21-AS1 INTS4 NDUFC2 ALG8 AAMDC KCTD14 ENSG00000254675
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCTD21-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KCTD21-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000042535 129 1801 PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9

Genomic Location for KCTD21-AS1 Gene

Chromosome:
11
Start:
78,139,771 bp from pter
End:
78,175,323 bp from pter
Size:
35,553 bases
Orientation:
Plus strand

Genomic View for KCTD21-AS1 Gene

Genes around KCTD21-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCTD21-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCTD21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCTD21-AS1 Gene

Proteins for KCTD21-AS1 Gene

Post-translational modifications for KCTD21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCTD21-AS1 Gene

Domains & Families for KCTD21-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCTD21-AS1 Gene

Function for KCTD21-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCTD21-AS1 Gene

Localization for KCTD21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCTD21-AS1 Gene

Pathways & Interactions for KCTD21-AS1 Gene

SuperPathways for KCTD21-AS1 Gene

No Data Available

Interacting Proteins for KCTD21-AS1 Gene

Gene Ontology (GO) - Biological Process for KCTD21-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCTD21-AS1 Gene

Drugs & Compounds for KCTD21-AS1 Gene

No Compound Related Data Available

Transcripts for KCTD21-AS1 Gene

mRNA/cDNA for KCTD21-AS1 Gene

(1) REFSEQ mRNAs :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KCTD21-AS1 Gene

No ASD Table

Relevant External Links for KCTD21-AS1 Gene

GeneLoc Exon Structure for
KCTD21-AS1
ECgene alternative splicing isoforms for
KCTD21-AS1

Expression for KCTD21-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCTD21-AS1 Gene

genes like me logo Genes that share expression patterns with KCTD21-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCTD21-AS1 Gene

Orthologs for KCTD21-AS1 Gene

Evolution for KCTD21-AS1 Gene

ENSEMBL:
Gene Tree for KCTD21-AS1 (if available)
TreeFam:
Gene Tree for KCTD21-AS1 (if available)

No data available for Orthologs for KCTD21-AS1 Gene

Paralogs for KCTD21-AS1 Gene

No data available for Paralogs for KCTD21-AS1 Gene

Variants for KCTD21-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCTD21-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs538716086 Uncertain significance 78,139,557(+) AATTG(C/G)CAGTA nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs542407081 Uncertain significance 78,139,595(+) GCTGC(A/G)GCACC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs886048689 Uncertain significance 78,139,593(-) TGCCG(C/T)AGCAA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs10793289 Benign 78,139,471(+) CCAGC(A/C)CCTGG intron-variant, nc-transcript-variant, upstream-variant-2KB, splice-donor-variant, utr-variant-5-prime
rs1000071259 -- 78,170,620(+) TGGAC(A/G)CAGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KCTD21-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1047928 CNV gain 25217958
nsv516503 CNV loss 19592680
nsv520740 CNV gain 19592680
nsv527066 CNV gain 19592680

Relevant External Links for KCTD21-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCTD21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCTD21-AS1 Gene

Disorders for KCTD21-AS1 Gene

Relevant External Links for KCTD21-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCTD21-AS1

No disorders were found for KCTD21-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCTD21-AS1 Gene

Publications for KCTD21-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for KCTD21-AS1 Gene

Sources for KCTD21-AS1 Gene

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