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Aliases for KCTD21-AS1 Gene

Subcategory (RNA class) for KCTD21-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCTD21-AS1 Gene

  • KCTD21 Antisense RNA 1 2 3 5

External Ids for KCTD21-AS1 Gene

Previous GeneCards Identifiers for KCTD21-AS1 Gene

  • GC11P077854

Summaries for KCTD21-AS1 Gene

GeneCards Summary for KCTD21-AS1 Gene

KCTD21-AS1 (KCTD21 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCTD21-AS1 Gene

Genomics for KCTD21-AS1 Gene

Regulatory Elements for KCTD21-AS1 Gene

Enhancers for KCTD21-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F078142 0.2 Ensembl 75.6 +3.6 3630 1.2 CBX1 CEBPZ CBX3 CBX5 ZNF585B TRIM24 TRIM28 KCTD21-AS1 RSF1 LOC101928865 KCTD21 GC11P078150
GH11F078138 0.5 ENCODE 75.6 0.0 -5 2.6 PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 KCTD21-AS1 KCTD21 USP35 THRSP INTS4 ALG8
GH11F078082 0.8 ENCODE 68.8 -54.5 -54486 4.6 ELF3 MLX ARID4B ZNF48 RAD21 DNMT3B RARA GATA4 CREM MIXL1 KCTD21-AS1 THRSP KCTD14 ENSG00000254829 INTS4 NDUFC2 ALG8 AAMDC LOC105369401 GC11P078094
GH11F078090 0.8 ENCODE 48.9 -48.9 -48890 1.6 ELF3 TBP MLX ARID4B DMAP1 ZSCAN9 RAD21 RARA YY1 SLC30A9 KCTD21-AS1 KCTD14 THRSP ENSG00000254829 INTS4 NDUFC2 KCTD21 GC11P078094 LOC105369401
GH11F078044 0.2 ENCODE 45.9 -94.2 -94215 2.7 HDGF ARID4B SIN3A ZNF48 ZNF2 SLC30A9 ZNF143 ZNF263 MIER2 REST KCTD21-AS1 INTS4 NDUFC2 ALG8 AAMDC KCTD14 ENSG00000254675
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around KCTD21-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KCTD21-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000320586 229 2400 PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143

Genomic Location for KCTD21-AS1 Gene

Chromosome:
11
Start:
78,139,771 bp from pter
End:
78,175,323 bp from pter
Size:
35,553 bases
Orientation:
Plus strand

Genomic View for KCTD21-AS1 Gene

Genes around KCTD21-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCTD21-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCTD21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCTD21-AS1 Gene

Proteins for KCTD21-AS1 Gene

Post-translational modifications for KCTD21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCTD21-AS1 Gene

Domains & Families for KCTD21-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCTD21-AS1 Gene

Function for KCTD21-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCTD21-AS1 Gene

Localization for KCTD21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCTD21-AS1 Gene

Pathways & Interactions for KCTD21-AS1 Gene

SuperPathways for KCTD21-AS1 Gene

No Data Available

Interacting Proteins for KCTD21-AS1 Gene

Gene Ontology (GO) - Biological Process for KCTD21-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCTD21-AS1 Gene

Transcripts for KCTD21-AS1 Gene

mRNA/cDNA for KCTD21-AS1 Gene

(1) REFSEQ mRNAs :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KCTD21-AS1 Gene

No ASD Table

Relevant External Links for KCTD21-AS1 Gene

GeneLoc Exon Structure for
KCTD21-AS1
ECgene alternative splicing isoforms for
KCTD21-AS1

Expression for KCTD21-AS1 Gene

mRNA expression in normal human tissues for KCTD21-AS1 Gene

genes like me logo Genes that share expression patterns with KCTD21-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KCTD21-AS1 Gene

Orthologs for KCTD21-AS1 Gene

Evolution for KCTD21-AS1 Gene

ENSEMBL:
Gene Tree for KCTD21-AS1 (if available)
TreeFam:
Gene Tree for KCTD21-AS1 (if available)

No data available for Orthologs for KCTD21-AS1 Gene

Paralogs for KCTD21-AS1 Gene

No data available for Paralogs for KCTD21-AS1 Gene

Variants for KCTD21-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCTD21-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10793289 Benign 78,139,471(+) CCAGC(A/C)CCTGG intron-variant, nc-transcript-variant, upstream-variant-2KB, splice-donor-variant, utr-variant-5-prime
rs10672200 -- 78,150,070(+) TTTTT(-/T/TT)GAGAT intron-variant
rs10675071 -- 78,141,101(+) GCTCA(-/AGC)AGCAG intron-variant, upstream-variant-2KB
rs111306477 -- 78,150,949(+) ACAGC(A/G)TTGTT intron-variant
rs111374162 -- 78,140,861(+) CAGTG(C/T)CACCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KCTD21-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1047928 CNV gain 25217958
nsv516503 CNV loss 19592680
nsv520740 CNV gain 19592680
nsv527066 CNV gain 19592680

Relevant External Links for KCTD21-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCTD21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCTD21-AS1 Gene

Disorders for KCTD21-AS1 Gene

Relevant External Links for KCTD21-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCTD21-AS1

No disorders were found for KCTD21-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCTD21-AS1 Gene

Publications for KCTD21-AS1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for KCTD21-AS1 Gene

Sources for KCTD21-AS1 Gene

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