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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

KCTD15 Gene

protein-coding   GIFtS: 52
GCID: GC19P034287

potassium channel tetramerisation domain containing 15

 Explore 6 diseases affiliated with
KCTD15 via our new
 Human Malady Compendium 
Biological research products
for KCTD15
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Potassium Channel Tetramerisation Domain Containing 151 2
MGC254971
BTB/POZ Domain-Containing Protein KCTD152

External Ids:    HGNC: 232971   Entrez Gene: 790472   Ensembl: ENSG000001538857   UniProtKB: Q96SI13   

Export aliases for KCTD15 gene to outside databases

Previous GC identifers: GC19P038979 GC19P030786


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for KCTD15


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011109.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the KCTD15 gene promoter:
         MEF-2A   SRF   TBP   SRF (504 AA)   IRF-7A   aMEF-2   Tal-1beta   En-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKCTD15 promoter sequence
   Search SABiosciences Chromatin IP Primers for KCTD15

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat KCTD15


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.11   Ensembl cytogenetic band:  19q13.11   HGNC cytogenetic band: 19q13.12

KCTD15 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KCTD15 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P034287:  view genomic region     (about GC identifiers)

Start:
34,286,838 bp from pter      End:
34,306,666 bp from pter
Size:
19,829 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: KCD15_HUMAN, Q96SI1 (See protein sequence)
Recommended Name: BTB/POZ domain-containing protein KCTD15  
Size: 283 amino acids; 31942 Da
Secondary accessions: A8K600 Q9BVI6
Alternative splicing: 2 isoforms:  Q96SI1-1   Q96SI1-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for KCTD15: NX_Q96SI1

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96SI1

  • KCTD15 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (3 alternative transcripts): 
    NP_001123466.1  NP_001123467.1  NP_076981.2  

    ENSEMBL proteins: 
     ENSP00000466357   ENSP00000466804   ENSP00000467955   ENSP00000464722   ENSP00000467612  
     ENSP00000284006   ENSP00000464812   ENSP00000467353   ENSP00000394390  

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    Uscn Proteins for KCTD15


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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    KCTD15 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR000210 BTB/POZ-like
     IPR011333 BTB/POZ_fold
     IPR003131 T1-type_BTB

    Graphical View of Domain Structure for InterPro Entry Q96SI1

    ProtoNet protein and cluster: Q96SI1

    1 Blocks protein family: IPB000210 BTB/POZ domain

    UniProtKB/Swiss-Prot: KCD15_HUMAN, Q96SI1
    Similarity: Contains 1 BTB (POZ) domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    miRNA
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    OriGene 3'-UTR Clone (see all 3): KCTD15
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    hsa-miR-631 hsa-miR-300 hsa-miR-146a hsa-miR-298 hsa-miR-629 hsa-miR-200b hsa-miR-4324 hsa-miR-455-5p
    SwitchGear 3'UTR luciferase reporter plasmidKCTD15 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KCTD15

    1 GenomeRNAi human phenotype for KCTD15:
     Decreased viability 

    Animal Models:
         1 MGI phenotypic allele for Kctd15 (no phenotypes)

    KCTD15 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Sweet Taste Signaling
    Sweet Taste Signaling1.00
    Bitter Taste Signaling0.44
    Melatonin Signaling0.72
    Sperm Motility0.36
    Cellular Effects of Sildenafil0.46
    2Activation of cAMP-Dependent PKA
    Activation of cAMP-Dependent PKA1.00
    PKA Signaling0.56
    cAMP Pathway0.77
    3Neuropathic Pain-Signaling in Dorsal Horn Neurons
    Neuropathic Pain-Signaling in Dorsal Horn Neurons1.00
    Cholera Infection0.40
    Aldosterone Signaling in Epithelial Cells0.47
    4Hepatic ABC Transporters
    Hepatic ABC Transporters1.00
    MODY (Maturity-Onset Diabetes of Young)0.41

    5/13 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for KCTD15 (see all 13)
        Cholera Infection
    Neuropathic Pain-Signaling in Dorsal Horn Neurons
    Hepatic ABC Transporters
    PKA Signaling
    Sweet Taste Signaling


    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for KCTD15

    STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

    5/9 Interacting proteins for KCTD15 (Q96SI12, 3 ENSP000003943904) via UniProtKB, MINT, STRING, and/or I2D (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RENP007972, 3, ENSP000002721904MINT-65369 I2D: score=5 STRING: ENSP00000272190
    WIPI1Q5MNZ92, 3MINT-65371 I2D: score=5 
    ENSAO437682, 3MINT-65372 I2D: score=4 
    TRIM27P143732, 3MINT-65370 I2D: score=4 
    TERF1P542743, ENSP000002766034I2D: score=1 STRING: ENSP00000276603
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0051260protein homooligomerization IEA--


    KCTD15 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for KCTD15
    Search CenterWatch for drugs/clinical trials and news about KCTD15 / KCD15 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for KCTD15 gene (3 alternative transcripts): 
    NM_001129994.1  NM_001129995.1  NM_024076.2  

    Unigene Cluster for KCTD15:

    Potassium channel tetramerisation domain containing 15
    Hs.221873  [show with all ESTs]
    Unigene Representative Sequence: NM_024076
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000587658 ENST00000587559 ENST00000588637 ENST00000590771 ENST00000589786
    ENST00000284006(uc002nuv.3 uc002nuy.4 uc010xrt.2 uc002nux.4)
    ENST00000588881 ENST00000590906 ENST00000430256(uc002nuw.4) ENST00000592210
    ENST00000590385 ENST00000592363

    miRNA
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    8/67 QIAGEN miScript miRNA Assays for microRNAs that regulate KCTD15 (see all 67):
    hsa-miR-631 hsa-miR-300 hsa-miR-146a hsa-miR-298 hsa-miR-629 hsa-miR-200b hsa-miR-4324 hsa-miR-455-5p
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    Inhib. RNA
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    Clone
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat KCTD15
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    Additional cDNA sequence: 

    AK025590.1 AK027901.1 AK096843.1 AK225793.1 AK291465.1 AK294543.1 BC001185.1 BC009335.2 

    8 DOTS entries:

    DT.453844  DT.92427113  DT.97777800  DT.95264141  DT.121498397  DT.121498402  DT.40121488  DT.121498404 

    24/169 AceView cDNA sequences (see all 169):

    AW510640 N31532 AA425927 AA331978 BU175567 CA950056 BM840722 BG571742 
    BG677356 AA461228 AI498644 BF061821 AI263714 BU158268 BM834184 AI803386 
    AI992053 AI827822 CA943857 AI808997 AW959399 BE312560 AI989791 CA397552 

    GeneLoc Exon Structure

    5/9 Alternative Splicing Database (ASD) splice patterns (SP) for KCTD15 (see all 9)    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c · 9d ^ 10 ^ 11a · 11b
    SP1:                                      -     -     -           -                                                                     
    SP2:                                                              -                                                           -         
    SP3:        -     -     -     -     -     -     -     -           -                                                                     
    SP4:                    -     -     -     -     -     -           -                                                                     
    SP5:                    -     -     -     -     -     -                                                                                 


    ECgene alternative splicing isoforms for KCTD15

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    KCTD15 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CCAAAGCTTC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    KCTD15 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 2 LifeMap Cells 
    NameCategory
    PureStem™ progenitor T42 (Embryonic Progenitor Cell)
    PureStem™ mesenchymal progenitor E15 (Embryonic Progenitor Cell)Adipose, Bone, Cartilage
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See KCTD15 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for KCTD15

    SOURCE GeneReport for Unigene cluster: Hs.221873
        SABiosciences Custom PCR Arrays for KCTD15
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KCTD15

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for KCTD15 gene from 5/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves KCTD151 potassium channel tetramerisation domain containing more 75.38(n)
    91.92(a)
      415779  XM_414140.3  XP_414140.3 
    lizard
    (Anolis carolinensis)
    Reptilia KCTD156
    --
    90(a)
    1 ↔ 1
    GL343508.1(99631-150160)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia MGC761382 hypothetical protein MGC76138 77.25(n)    BC063913.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.155922 Transcribed sequence with moderate similarity to protein more 76.08(n)    BM342205.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG104401 CG10440 60.71(n)
    54.89(a)
      37456  NM_137744.1  NP_611588.1 


    ENSEMBL Gene Tree for KCTD15 (if available)
    TreeFam Gene Tree for KCTD15 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for KCTD15 gene
    KCTD12  KCTD82  KCTD162  KCTD42  KCNRG2  KCTD112  KCTD122  KCTD212  
    KCTD62  KCTD142  
    4 SIMAP similar genes for KCTD15 using alignment to 6 protein entries:     KCD15_HUMAN (see all proteins):
    KCTD1    KCTD21    KCTD6    KCTD19

    KCTD15 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/339 NCBI SNPs in KCTD15 are shown (see all 339    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1488316111,2
    --34285813(+) ACGCGC/TAGAGA 3 -- us2k10--------
    rs38103611,2
    C,F,H,--34285951(-) AAAGAA/GGCCCT 3 -- us2k121Minor allele frequency- G:0.44NS EA WA NA CSA 2343
    rs1832015201,2
    --34286025(+) TTTGTA/GAGCTA 3 -- us2k10--------
    rs1434408071,2
    --34286249(+) GCGAGA/GTCCTC 3 -- us2k10--------
    rs1159194101,2
    F,--34286516(+) GCGCTC/TCGTTT 3 -- us2k11Minor allele frequency- T:0.26WA 118
    rs1878452131,2
    --34286572(+) GCGGGA/GCGCAA 3 -- us2k10--------
    rs2856771,2
    C,F,--34286666(-) CCCGGG/ACGCCC 3 -- us2k16Minor allele frequency- A:0.43NA CSA WA EA 363
    rs1929549521,2
    --34286722(+) CGCGCC/TGCGCG 3 -- us2k10--------
    rs1132349811,2
    C,--34286841(+) GCGGGG/TCAGAG 3 -- us2k11Minor allele frequency- T:0.50NA 2
    rs1849769501,2
    --34286889(+) CCTGGA/CCCCCG 3 -- us2k10--------

    HapMap Linkage Disequilibrium report for KCTD15 (34286838 - 34306666 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 4 variations for KCTD15
         4 CNVs: 8871 78167 3188 4076

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing KCTD15
    DNA2.0 Custom Variant and Variant Library Synthesis for KCTD15

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    KCTD15 for disorders           About GeneDecksing

    6 diseases for KCTD15:    About MalaCards
    type 2 diabetes mellitus    anorexia nervosa    diabetes mellitus    asthma
    obesity    neuronitis

    Human Genome Epidemiology (HuGE) Navigator: KCTD15 (23 documents)

    Export disorders for KCTD15 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for KCTD15 gene, integrated from 9 sources (see all 35):
    (articles sorted by number of sources associating them with KCTD15)
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    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    4. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    5. Comparative proteomic analysis identifies a role for S UMO in protein quality control. (PubMed id 21693764)1 Tatham M.H....Hay R.T. (2011)
    6. Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. (PubMed id 20935630)1 Speliotes E.K....Loos R.J. (2010)
    7. Genetic susceptibility to obesity and related traits in childhood and adolescence: influence of loci identified by genome-wide assoc iation studies. (PubMed id 20724581)1 den Hoed M....Loos R.J. (2010)
    8. Genetic markers of adult obesity risk are associated with greater early infancy weight gain and growth. (PubMed id 20520848)1 Elks C.E....Ong K.K. (2010)
    9. Evaluating the discriminative power of multi-trait ge netic risk scores for type 2 diabetes in a northern Swedish population. (PubMed id 20571754)1 Fontaine-Bisson B....Franks P.W. (2010)
    10. Implication of genetic variants near NEGR1, SEC16B, T MEM18, ETV5/DGKG, GNPDA2, LIN7C/BDNF, MTCH2, BCDIN3D/FAIM2, SH2B1, FTO, MC4R, a nd KCTD15 with obesity and type 2 diabetes in 7705 Chinese. (PubMed id 20215397)1 Ng M.C....Ma R.C. (2010)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 79047 HGNC: 23297 AceView: KCTD15 Ensembl:ENSG00000153885 euGenes: HUgn79047
    ECgene: KCTD15 H-InvDB: KCTD15

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for KCTD15 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for KCTD15 gene:
    Search GeneIP for patents involving KCTD15

    GeneCards and IP:
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