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Aliases for KCNQ5-IT1 Gene

Subcategory (RNA class) for KCNQ5-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNQ5-IT1 Gene

  • KCNQ5 Intronic Transcript 1 2 3 5
  • KCNQ5 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KCNQ5-IT1 Gene

Previous GeneCards Identifiers for KCNQ5-IT1 Gene

  • GC00U933843
  • GC06P073342

Summaries for KCNQ5-IT1 Gene

GeneCards Summary for KCNQ5-IT1 Gene

KCNQ5-IT1 (KCNQ5 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNQ5-IT1 Gene

Genomics for KCNQ5-IT1 Gene

Regulatory Elements for KCNQ5-IT1 Gene

Enhancers for KCNQ5-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G072619 1.3 FANTOM5 ENCODE 0.4 -8.6 -8647 4.6 HDGF PKNOX1 WRNIP1 SIN3A FEZF1 CBX5 ZNF143 ZNF207 JUNB TBX21 KCNQ5 KCNQ5-IT1
GH06G072648 1 Ensembl ENCODE 0.4 +19.6 19625 2.5 TBL1XR1 EBF1 RELA ZNF316 ARID3A POLR2A PRDM10 NFE2 FOS RELB KCNQ5 KCNQ5-IT1 GC06P072687
GH06G072646 0.4 ENCODE 0.4 +16.3 16333 0.2 ZBTB40 KCNQ5 KCNQ5-IT1 GC06P072687
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNQ5-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KCNQ5-IT1 Gene

Chromosome:
6
Start:
72,630,495 bp from pter
End:
72,678,558 bp from pter
Size:
48,064 bases
Orientation:
Plus strand

Genomic View for KCNQ5-IT1 Gene

Genes around KCNQ5-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNQ5-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNQ5-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNQ5-IT1 Gene

Proteins for KCNQ5-IT1 Gene

Post-translational modifications for KCNQ5-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNQ5-IT1 Gene

Domains & Families for KCNQ5-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNQ5-IT1 Gene

Function for KCNQ5-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNQ5-IT1 Gene

Localization for KCNQ5-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCNQ5-IT1 Gene

Pathways & Interactions for KCNQ5-IT1 Gene

SuperPathways for KCNQ5-IT1 Gene

No Data Available

Interacting Proteins for KCNQ5-IT1 Gene

Gene Ontology (GO) - Biological Process for KCNQ5-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNQ5-IT1 Gene

Transcripts for KCNQ5-IT1 Gene

mRNA/cDNA for KCNQ5-IT1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KCNQ5-IT1 Gene

KCNQ5 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KCNQ5-IT1 Gene

No ASD Table

Relevant External Links for KCNQ5-IT1 Gene

GeneLoc Exon Structure for
KCNQ5-IT1
ECgene alternative splicing isoforms for
KCNQ5-IT1

Expression for KCNQ5-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNQ5-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNQ5-IT1 Gene

This gene is overexpressed in Testis (x31.2).

SOURCE GeneReport for Unigene cluster for KCNQ5-IT1 Gene:

Hs.662412
genes like me logo Genes that share expression patterns with KCNQ5-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNQ5-IT1 Gene

Orthologs for KCNQ5-IT1 Gene

Evolution for KCNQ5-IT1 Gene

ENSEMBL:
Gene Tree for KCNQ5-IT1 (if available)
TreeFam:
Gene Tree for KCNQ5-IT1 (if available)

No data available for Orthologs for KCNQ5-IT1 Gene

Paralogs for KCNQ5-IT1 Gene

No data available for Paralogs for KCNQ5-IT1 Gene

Variants for KCNQ5-IT1 Gene

Sequence variations from dbSNP and Humsavar for KCNQ5-IT1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000007224 -- 72,648,539(+) ACATG(A/G)CAACC intron-variant
rs1000051423 -- 72,659,089(+) TACAT(C/T)TAAGA intron-variant
rs1000290458 -- 72,641,835(+) TGTGT(A/G)TGCTT intron-variant
rs1000299131 -- 72,652,694(+) AAGGC(A/T)TACTT intron-variant
rs1000329614 -- 72,628,570(+) CCCCA(A/G)GGTCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KCNQ5-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv1130e199 CNV deletion 23128226
dgv86n68 CNV gain 17160897
esv3353350 CNV duplication 20981092
esv3609491 CNV loss 21293372
nsv463152 CNV loss 19166990
nsv603692 CNV loss 21841781
nsv823730 CNV loss 20364138

Relevant External Links for KCNQ5-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNQ5-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNQ5-IT1 Gene

Disorders for KCNQ5-IT1 Gene

Relevant External Links for KCNQ5-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCNQ5-IT1

No disorders were found for KCNQ5-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNQ5-IT1 Gene

Publications for KCNQ5-IT1 Gene

No publications were found for KCNQ5-IT1 Gene.

Products for KCNQ5-IT1 Gene

Sources for KCNQ5-IT1 Gene

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