Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KCNQ5-AS1 Gene

Subcategory (RNA class) for KCNQ5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNQ5-AS1 Gene

  • KCNQ5 Antisense RNA 1 2 3 5
  • KCNQ5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for KCNQ5-AS1 Gene

Previous GeneCards Identifiers for KCNQ5-AS1 Gene

  • GC00U933658
  • GC06M073845

Summaries for KCNQ5-AS1 Gene

GeneCards Summary for KCNQ5-AS1 Gene

KCNQ5-AS1 (KCNQ5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNQ5-AS1 Gene

Genomics for KCNQ5-AS1 Gene

Regulatory Elements for KCNQ5-AS1 Gene

Enhancers for KCNQ5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G073180 1 Ensembl ENCODE 11 -37.4 -37375 1.0 CTCF PKNOX1 RB1 MAX CEBPG RAD21 ZNF766 POLR2A ZNF143 SMC3 KCNQ5-AS1 GC06M073163 KHDC1P1
GH06G072412 0.9 ENCODE 10.7 +731.1 731131 0.2 ATF1 RB1 ARNT WRNIP1 SIN3A ZNF2 RAD21 CHAMP1 RFX5 GATA2 KCNQ5-AS1 LOC100418957 LOC100422453
GH06G073123 0.4 FANTOM5 11.6 +20.1 20066 0.3 DPF2 KCNQ5-AS1 GC06M073105
GH06G073129 1.1 Ensembl ENCODE 0.4 +13.4 13414 0.6 RB1 TBL1XR1 WRNIP1 INSM2 ZNF76 FEZF1 ZNF2 RAD21 ZNF366 CBX5 KCNQ5 KCNQ5-AS1 GC06M073105
GH06G073141 0.3 FANTOM5 0.7 +1.4 1380 0.7 OOEP KCNQ5-AS1 GC06M073105
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNQ5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KCNQ5-AS1 Gene

Chromosome:
6
Start:
73,134,803 bp from pter
End:
73,143,514 bp from pter
Size:
8,712 bases
Orientation:
Minus strand

Genomic View for KCNQ5-AS1 Gene

Genes around KCNQ5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNQ5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNQ5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNQ5-AS1 Gene

Proteins for KCNQ5-AS1 Gene

Post-translational modifications for KCNQ5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNQ5-AS1 Gene

Domains & Families for KCNQ5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNQ5-AS1 Gene

Function for KCNQ5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNQ5-AS1 Gene

Localization for KCNQ5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCNQ5-AS1 Gene

Pathways & Interactions for KCNQ5-AS1 Gene

SuperPathways for KCNQ5-AS1 Gene

No Data Available

Interacting Proteins for KCNQ5-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNQ5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNQ5-AS1 Gene

Drugs & Compounds for KCNQ5-AS1 Gene

No Compound Related Data Available

Transcripts for KCNQ5-AS1 Gene

mRNA/cDNA for KCNQ5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNQ5-AS1 Gene

No ASD Table

Relevant External Links for KCNQ5-AS1 Gene

GeneLoc Exon Structure for
KCNQ5-AS1
ECgene alternative splicing isoforms for
KCNQ5-AS1

Expression for KCNQ5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNQ5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNQ5-AS1 Gene

This gene is overexpressed in Testis (x45.4).

SOURCE GeneReport for Unigene cluster for KCNQ5-AS1 Gene:

Hs.743196
genes like me logo Genes that share expression patterns with KCNQ5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNQ5-AS1 Gene

Orthologs for KCNQ5-AS1 Gene

Evolution for KCNQ5-AS1 Gene

ENSEMBL:
Gene Tree for KCNQ5-AS1 (if available)
TreeFam:
Gene Tree for KCNQ5-AS1 (if available)

No data available for Orthologs for KCNQ5-AS1 Gene

Paralogs for KCNQ5-AS1 Gene

No data available for Paralogs for KCNQ5-AS1 Gene

Variants for KCNQ5-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNQ5-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000115162 -- 73,142,049(+) TTTTA(C/T)TTCCT intron-variant
rs1000336448 -- 73,136,379(+) CCACT(A/C)TCTAT intron-variant
rs1000926515 -- 73,140,189(+) GACTA(C/T)CAGTA intron-variant
rs1002204985 -- 73,139,433(+) ATAGT(A/G)TAATA intron-variant
rs1002233393 -- 73,134,416(+) TAATG(C/T)ATAAA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for KCNQ5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv519218 CNV gain 19592680

Relevant External Links for KCNQ5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNQ5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNQ5-AS1 Gene

Disorders for KCNQ5-AS1 Gene

Relevant External Links for KCNQ5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCNQ5-AS1

No disorders were found for KCNQ5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNQ5-AS1 Gene

Publications for KCNQ5-AS1 Gene

No publications were found for KCNQ5-AS1 Gene.

Products for KCNQ5-AS1 Gene

Sources for KCNQ5-AS1 Gene

Content
Loading form....