Aliases for KCNN4 Gene
Aliases for KCNN4 Gene
- Potassium Calcium-Activated Channel Subfamily N Member 4 2 3 5
- Potassium Channel, Calcium Activated Intermediate/Small Conductance Subfamily N Alpha, Member 4 2 3
- Potassium Intermediate/Small Conductance Calcium-Activated Channel, Subfamily N, Member 4 2 3
- Small Conductance Calcium-Activated Potassium Channel 4 2 3
- Putative Gardos Channel 3 4
- SKCa 4 3 4
- KCa3.1 3 4
- IKCA1 3 4
- SKCa4 3 4
- KCA4 3 4
- IK1 3 4
External Ids for KCNN4 Gene
- HGNC: 6293
- Entrez Gene: 3783
- Ensembl: ENSG00000104783
- OMIM: 602754
- UniProtKB: O15554
Previous GeneCards Identifiers for KCNN4 Gene
- GC19M044916
- GC19M044662
- GC19M048946
- GC19M048962
- GC19M044270
- GC19M040702
Summaries for KCNN4 Gene
-
The protein encoded by this gene is part of a potentially heterotetrameric voltage-independent potassium channel that is activated by intracellular calcium. Activation is followed by membrane hyperpolarization, which promotes calcium influx. The encoded protein may be part of the predominant calcium-activated potassium channel in T-lymphocytes. This gene is similar to other KCNN family potassium channel genes, but it differs enough to possibly be considered as part of a new subfamily. [provided by RefSeq, Jul 2008]
GeneCards Summary for KCNN4 Gene
KCNN4 (Potassium Calcium-Activated Channel Subfamily N Member 4) is a Protein Coding gene. Diseases associated with KCNN4 include Dehydrated Hereditary Stomatocytosis 2 and Fabry Disease. Among its related pathways are Collagen chain trimerization and CFTR-dependent regulation of ion channels in Airway Epithelium (norm and CF). GO annotations related to this gene include calmodulin binding and potassium channel activity. An important paralog of this gene is KCNN2.
UniProtKB/Swiss-Prot for KCNN4 Gene
-
Forms a voltage-independent potassium channel that is activated by intracellular calcium (PubMed:26148990). Activation is followed by membrane hyperpolarization which promotes calcium influx. Required for maximal calcium influx and proliferation during the reactivation of naive T-cells. The channel is blocked by clotrimazole and charybdotoxin but is insensitive to apamin (PubMed:17157250, PubMed:18796614).
-
Calcium (Ca2+) -activated potassium channels (KCa) are a group of 6/7-TM ion channels that selectively transport K+ ions across biological membranes. They are broadly classified into three subtypes: SK, IK and BK channels (small, intermediate and big conductance).
No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNN4 Gene
Genomics for KCNN4 Gene
Regulatory Elements for KCNN4 Gene
- Transcription factor binding sites by QIAGEN in the KCNN4 gene promoter:
Regulatory Element Products
Genomic Location for KCNN4 Gene
- Chromosome:
- 19
- Start:
- 43,766,533 bp from pter
- End:
- 43,782,139 bp from pter
- Size:
- 15,607 bases
- Orientation:
- Minus strand
Genomic View for KCNN4 Gene
- Cytogenetic band:
-
- 19q13.31 by Ensembl
- 19q13.31 by Entrez Gene
- 19q13.31 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for KCNN4 Gene
Proteins for KCNN4 Gene
-
Protein details for KCNN4 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- O15554-KCNN4_HUMAN
- Recommended name:
- Intermediate conductance calcium-activated potassium channel protein 4
- Protein Accession:
- O15554
- Q53XR4
Protein attributes for KCNN4 Gene
- Size:
- 427 amino acids
- Molecular mass:
- 47696 Da
- Quaternary structure:
-
- Heterotetramer of potassium channel proteins (Probable). Interacts with MTMR6.
Protein Expression for KCNN4 Gene
Post-translational modifications for KCNN4 Gene
- Phosphorylation at His-358 by NDKB activates the channel, and conversely its dephosphorylation by PHPT1 inhibits the channel.
- Ubiquitination at posLast=394394
- Modification sites at PhosphoSitePlus
Other Protein References for KCNN4 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- EMD Millipore Complete listing of Mono and Polychlonal Antibodies for KCNN4
-
Custom Antibody ServicesOriGene Antibodies for KCNN4
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- antibodies-online Antibodies for KCNN4: See all 75
- GeneTex KCNN4 antibody for KCNN4
-
Santa Cruz Biotechnology (SCBT) Antibodies for KCNN4
Protein Products
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OriGene Purified Proteins for KCNN4
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- Search GeneTex for Proteins for KCNN4
Assay Products
No data available for DME Specific Peptides for KCNN4 Gene
Domains & Families for KCNN4 Gene
Gene Families for KCNN4 Gene
- HGNC:
- IUPHAR :
Protein Domains for KCNN4 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for KCNN4 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
O15554UniProtKB/Swiss-Prot:
KCNN4_HUMAN :- Belongs to the potassium channel KCNN family. KCa3.1/KCNN4 subfamily.
- Family:
-
- Belongs to the potassium channel KCNN family. KCa3.1/KCNN4 subfamily.
Function for KCNN4 Gene
Molecular function for KCNN4 Gene
- GENATLAS Biochemistry:
- potassium intermediate/small conductance calcium-activated channel,subfamily N,member 4,expressed in T lymphocytes and red cells,also expressed in placenta,prostate,fetal,liver and spleen,pancreas and ovarian tumors
- UniProtKB/Swiss-Prot Function:
- Forms a voltage-independent potassium channel that is activated by intracellular calcium (PubMed:26148990). Activation is followed by membrane hyperpolarization which promotes calcium influx. Required for maximal calcium influx and proliferation during the reactivation of naive T-cells. The channel is blocked by clotrimazole and charybdotoxin but is insensitive to apamin (PubMed:17157250, PubMed:18796614).
- UniProtKB/Swiss-Prot Induction:
- Up-regulated by phorbol myristate acetate (PMA) and phytohemagglutinin (PHA) in T-cells.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005267 | potassium channel activity | TAS | -- |
| GO:0005515 | protein binding | IPI | 12198491 |
| GO:0005516 | calmodulin binding | IEA,IBA | -- |
| GO:0015269 | calcium-activated potassium channel activity | IEA,IDA | 18796614 |
| GO:0016286 | small conductance calcium-activated potassium channel activity | IBA,IEA | -- |
Phenotypes for KCNN4 Gene
- MGI mutant phenotypes for KCNN4:
- inferred from 3 alleles
- GenomeRNAi human phenotypes for KCNN4:
Animal Model Products
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miRNA for KCNN4 Gene
- miRTarBase miRNAs that target KCNN4
miRNA Products
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Inhibitory RNA Products
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Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for KCNN4 Gene
Localization for KCNN4 Gene
Subcellular locations from UniProtKB/Swiss-Prot for KCNN4 Gene
- Cell membrane; Multi-pass membrane protein.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005886 | plasma membrane | TAS | -- |
| GO:0008076 | voltage-gated potassium channel complex | TAS,IC | 18796614 |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
| GO:0031982 | vesicle | IDA | 25468996 |
Pathways & Interactions for KCNN4 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Insulin secretion | ||
| 2 | Collagen chain trimerization | ||
| 3 | Salivary secretion | ||
| 4 | Transmission across Chemical Synapses |
.62
|
|
| 5 | Potassium Channels | ||
Pathways by source for KCNN4 Gene
3 Reactome pathways for KCNN4 Gene
3 KEGG pathways for KCNN4 Gene
1 GeneGo (Thomson Reuters) pathway for KCNN4 Gene
Interacting Proteins for KCNN4 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0002376 | immune system process | IEA | -- |
| GO:0006810 | transport | IEA | -- |
| GO:0006811 | ion transport | IEA | -- |
| GO:0006813 | potassium ion transport | IEA,TAS | 9380751 |
| GO:0006816 | calcium ion transport | IDA | 18796614 |
Drugs & Compounds for KCNN4 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Clotrimazole | Approved, Vet_approved | Pharma | Inhibition, Pore Blocker, inhibitor, Target | Cytochrome P450 inhibitor; antifungal | 38 | |
| Miconazole | Approved, Investigational, Vet_approved | Pharma | Antagonist, Pore Blocker, Target, inhibitor | 3706 | ||
| Quinine | Approved | Pharma | Pore Blocker, Target, inhibitor | 46 | ||
| Chlorzoxazone | Approved | Pharma | Agonist, Activator, activator | 7 | ||
| Nitrendipine | Approved | Pharma | Inhibition, Pore Blocker, blocker | Calcium channel blocker | 5 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs | |
|---|---|---|---|---|---|---|
| trifluoroacetic acid |
|
76-05-1 |
|
|||
| TRAM 34 |
|
289905-88-0 |
|
|
(5) Tocris Compounds for KCNN4 Gene
| Compound | Action | Cas Number |
|---|---|---|
| Apamin | KCa2 channel blocker (small conductance) | 24345-16-2 |
| CyPPA | Activator of KCa2.2 and KCa2.3 channels | 73029-73-9 |
| Iberiotoxin | KCa channel blocker (big conductance) | 129203-60-7 |
| Paxilline | SERCA ATPase blocker. Also potent BKCa channel blocker | 57186-25-1 |
| TRAM 34 | Potent and highly selective KCa3.1 channel blocker | 289905-88-0 |
(4) ApexBio Compounds for KCNN4 Gene
Drug Products
- ApexBio compounds for KCNN4
Transcripts for KCNN4 Gene
mRNA/cDNA for KCNN4 Gene
- (4) REFSEQ mRNAs :
- (11) Additional mRNA sequences :
- (148) Selected AceView cDNA sequences:
- (9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for KCNN4 Gene
CRISPR Products
-
OriGene CRISPR knockouts for KCNN4
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Santa Cruz Biotechnology (SCBT) CRISPR for KCNN4
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miRNA Products
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Inhibitory RNA Products
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Flow Cytometry Products
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | · | 7c | ^ | 8a | · | 8b | ^ | 9a | · | 9b | · | 9c | ^ | 10a | · | 10b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | ||||||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | ||||||||||||||||||||||||||||||||||||||
| SP3: | |||||||||||||||||||||||||||||||||||||||||
| SP4: | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||
| SP5: | - | ||||||||||||||||||||||||||||||||||||||||
| SP6: | |||||||||||||||||||||||||||||||||||||||||
| SP7: | - | ||||||||||||||||||||||||||||||||||||||||
| SP8: | - |
Expression for KCNN4 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Kidney (Urinary System)
- Ureteric Bud Tip Cells Ureteric Bud
- Ureteric Bud
- Metanephros
-
Skeletal Muscle (Muscoskeletal System)
- Muscle Progenitor Cells Mandibular Arch Muscles
- Muscle Progenitor Cells Hyoid Arch Muscles
-
Yolk Sac (Extraembryonic Tissues)
- Definitive Hematopoietic Stem Cells Definitive Yolk Sac
-
Blood (Cardiovascular System)
- Definitive Hematopoietic Stem Cells Definitive Yolk Sac
- Thymus (Hematopoietic System)
-
Placenta (Extraembryonic Tissues)
-
Stomach (Gastrointestinal Tract)
mRNA differential expression in normal tissues according to GTEx for KCNN4 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for KCNN4 Gene
NURSA nuclear receptor signaling pathways regulating expression of KCNN4 Gene:
KCNN4SOURCE GeneReport for Unigene cluster for KCNN4 Gene:
Hs.10082mRNA Expression by UniProt/SwissProt for KCNN4 Gene:
O15554-KCNN4_HUMANEvidence on tissue expression from TISSUES for KCNN4 Gene
- Muscle(4.4)
- Lymph node(4.2)
- Pancreas(4.2)
- Intestine(2.2)
- Heart(2.1)
- Blood(2)
Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNN4 Gene
- ectoderm
- mesoderm
- cardiovascular
- nervous
- urinary
- brain
- ear
- head
- heart
- kidney
- blood
- red blood cell
Primer Products
-
OriGene qPCR primer pairs for KCNN4
-
OriGene qPCR primer pairs and template standards for KCNN4
Orthologs for KCNN4 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | KCNN4 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | KCNN4 35 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | KCNN4 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Kcnn4 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Kcnn4 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | KCNN4 35 |
|
OneToOne | |
| lizard (Anolis carolinensis) |
Reptilia | KCNN4 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | LOC101732300 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LOC568363 34 |
|
||
| KCNN4 35 |
|
OneToOne | |||
| fruit fly (Drosophila melanogaster) |
Insecta | SK 35 |
|
OneToMany | |
| worm (Caenorhabditis elegans) |
Secernentea | kcnl-4 35 |
|
ManyToMany | |
| kcnl-2 35 |
|
ManyToMany | |||
| kcnl-1 35 |
|
ManyToMany | |||
| kcnl-3 35 |
|
ManyToMany | |||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 35 |
|
OneToMany |
- Species where no ortholog for KCNN4 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for KCNN4 Gene
(5) SIMAP similar genes for KCNN4 Gene using alignment to 8 proteins:
Variants for KCNN4 Gene
| SNP ID | Clin | Chr 19 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs774455945 | Pathogenic, Dehydrated hereditary stomatocytosis 2 (DHS2) [MIM:616689] | 43,769,027(+) | CCTGG(C/T)GGAAC | nc-transcript-variant, reference, missense | |
| VAR_074485 | Dehydrated hereditary stomatocytosis 2 (DHS2) [MIM:616689] | ||||
| VAR_074486 | Dehydrated hereditary stomatocytosis 2 (DHS2) [MIM:616689] | ||||
| rs1057519076 | Pathogenic | 43,769,805(-) | TGCTG(A/G)TGGCC | nc-transcript-variant, reference, missense | |
| rs1057519077 | Pathogenic | 43,769,804(-) | GCTGG(A/T)GGCCG | nc-transcript-variant, reference, missense |
Relevant External Links for KCNN4 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KCNN4 Gene
Disorders for KCNN4 Gene
(4) MalaCards diseases for KCNN4 Gene - From: ClinVar, GeneTests, Swiss-Prot, DISEASES, Novoseek, and GeneCards
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| dehydrated hereditary stomatocytosis 2 |
|
|
| fabry disease |
|
|
| sickle cell disease |
|
|
| diamond-blackfan anemia |
|
|
UniProtKB/Swiss-Prot
KCNN4_HUMAN- Dehydrated hereditary stomatocytosis 2 (DHS2) [MIM:616689]: An autosomal dominant hemolytic anemia characterized by primary erythrocyte dehydration. Erythrocytes exhibit decreased total cation and potassium content that are not accompanied by a proportional net gain of sodium and water. Affected individuals typically manifest mild to moderate compensated hemolytic anemia, with an increased erythrocyte mean corpuscular hemoglobin concentration and a decreased osmotic fragility, both of which reflect cellular dehydration. Their red cells exhibit a panel of various shape abnormalities such as elliptocytes, hemighosts, schizocytes, and very rare stomatocytic cells. Complications such as splenomegaly and cholelithiasis, resulting from increased red cell trapping in the spleen and elevated bilirubin levels, respectively, may occur. {ECO:0000269 PubMed:26148990, ECO:0000269 PubMed:26178367, ECO:0000269 PubMed:26198474}. Note=The disease is caused by mutations affecting the gene represented in this entry.
Relevant External Links for KCNN4
No data available for Genatlas for KCNN4 Gene
Publications for KCNN4 Gene
- hSK4, a member of a novel subfamily of calcium-activated potassium channels. (PMID: 9380751) Joiner W.J. … Kaczmarek L.K. (Proc. Natl. Acad. Sci. U.S.A. 1997) 2 3 4 22 64
- A novel gene, hKCa4, encodes the calcium-activated potassium channel in human T lymphocytes. (PMID: 9407042) Logsdon N.J. … Aiyar J. (J. Biol. Chem. 1997) 2 3 4 22 64
- Delineation of the clotrimazole/TRAM-34 binding site on the intermediate conductance calcium-activated potassium channel, IKCa1. (PMID: 11425865) Wulff H. … Chandy K.G. (J. Biol. Chem. 2001) 3 4 22 64
- Up-regulation of the IKCa1 potassium channel during T-cell activation. Molecular mechanism and functional consequences. (PMID: 10961988) Ghanshani S. … Chandy K.G. (J. Biol. Chem. 2000) 3 4 22 64
- Calmodulin mediates calcium-dependent activation of the intermediate conductance KCa channel, IKCa1. (PMID: 10026195) Fanger C.M. … Aiyar J. (J. Biol. Chem. 1999) 3 4 22 64
Products for KCNN4 Gene
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- Mammalian expression: PiggyBac
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- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for KCNN4 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
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