Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

KCNN1 Gene

protein-coding   GIFtS: 55
GCID: GC19P018062

potassium intermediate/small conductance calcium-activated...

 Explore 20 diseases affiliated with
KCNN1 via our new
 Human Malady Compendium 
Biological research products
for KCNN1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Potassium Intermediate/Small Conductance Calcium-Activated Channel,
Subfamily N, Member 11 2
     Small Conductance Calcium-Activated Potassium Channel Protein 12
KCa2.11 2 3     SK3
HSK11     SKCa13
SK12 3     SKCa 13
SKCA12     

External Ids:    HGNC: 62901   Entrez Gene: 37802   Ensembl: ENSG000001056427   OMIM: 6029825   UniProtKB: Q929523   

Export aliases for KCNN1 gene to outside databases

Previous GC identifers: GC19P018555 GC19P018454 GC19P017907 GC19P017924 GC19P017925 GC19P017926 GC19P017627


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for KCNN1:
Action potentials in vertebrate neurons are followed by an afterhyperpolarization (AHP) that may persist for several
seconds and may have profound consequences for the firing pattern of the neuron. Each component of the AHP is
kinetically distinct and is mediated by different calcium-activated potassium channels. The protein encoded by this
gene is activated before membrane hyperpolarization and is thought to regulate neuronal excitability by contributing
to the slow component of synaptic AHP. The encoded protein is an integral membrane protein that forms a
voltage-independent calcium-activated channel with three other calmodulin-binding subunits. This gene is a member of
the KCNN family of potassium channel genes. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: KCNN1_HUMAN, Q92952
Function: Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by
membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of
synaptic afterhyperpolarization. The channel is blocked by apamin (By similarity)

summary for KCNN1:
Ca2+-activated potassium channels (KCa) are a group of 6/7-TM ion channels that selectively transport K+
ions across biological membranes. They are broadly classified into three subtypes, SK, IK and BK channels,
based on their conductance (small, intermediate and big conductance respectively). The small conductance KCa
channels (KCa2.1, 2.2 and 2.3, also known as SK1, SK2 and SK3 respectively) and the intermediate conductance
KCa channel (KCa3.1, also known as SK4) are voltage-insensitive and are activated by Ca2+-calmodulin. Both
play important roles in many processes involving Ca2+-dependent signalling in both electrically excitable
and non-excitable cells. The BK family of KCa channels (also known as Slo or Maxi-K channels) are also
voltage-sensitive and include KCa1.1 (Slo1), KCa4.1 (Slo2.2), KCa4.2 (Slo2.1) and KCa5.1 (Slo3). These
channels do not require calmodulin for activation as they contain three direct bivalent cation binding
sites.

Gene Wiki entry for KCNN1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011295.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the KCNN1 gene promoter:
         ER-alpha   GR   GR-beta   MIF-1   AP-4   Egr-4   c-Rel   STAT3   GR-alpha   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKCNN1 promoter sequence
   Search SABiosciences Chromatin IP Primers for KCNN1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat KCNN1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.1   Ensembl cytogenetic band:  19p13.11   HGNC cytogenetic band: 19p13.1

KCNN1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KCNN1 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P018062:  view genomic region     (about GC identifiers)

Start:
18,062,111 bp from pter      End:
18,110,893 bp from pter
Size:
48,783 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: KCNN1_HUMAN, Q92952 (See protein sequence)
Recommended Name: Small conductance calcium-activated potassium channel protein 1  
Size: 543 amino acids; 59987 Da
Subunit: Heterooligomer. The complex is composed of 4 channel subunits each of which binds to a calmodulin subunit
which regulates the channel activity through calcium-binding (By similarity)
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: Q5KR10 Q6DJU4
Alternative splicing: 2 isoforms:  Q92952-1   Q92952-2   

Explore the universe of human proteins at neXtProt for KCNN1: NX_Q92952

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q92952

  • KCNN1 Protein expression data from MOPED and PaxDb:    About this image 
    KCNN1 Protein Expression
    REFSEQ proteins: NP_002239.2  
    ENSEMBL proteins: 
     ENSP00000222249   ENSP00000437873  
    Reactome Protein details: Q92952
    Human Recombinant Protein Products for KCNN1: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: KCNN1
    OriGene Custom Protein Services for KCNN1 
    GenScript Custom Purified and Recombinant Proteins Services for KCNN1
    Novus Biologicals KCNN1 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for KCNN1

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm ----
    GO:0005886plasma membrane TAS--
    GO:0008076voltage-gated potassium channel complex TAS8781233
    GO:0016021integral to membrane ----

    KCNN1 for ontologies           About GeneDecksing



    KCNN1 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of KCNN1
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for KCNN1 
    GenScript Custom Superior Antibodies Services for KCNN1
    Novus Biologicals KCNN1 Antibody
    Abcam antibodies for KCNN1 
    Uscn Antibodies for KCNN1
    Search ThermoFisher Antibodies for KCNN1

    Assay Products for KCNN1: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for KCNN1
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for KCNN1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    KCNN1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR004178 CaM-bd_dom
     IPR015449 K_chnl_Ca-activ_SK
     IPR013099 Ion_trans_2

    Graphical View of Domain Structure for InterPro Entry Q92952

    ProtoNet protein and cluster: Q92952

    3 Blocks protein families:
    IPB004178 Calmodulin binding domain
    IPB011996 SK channel region
    IPB013099 Ion transport 2


    UniProtKB/Swiss-Prot: KCNN1_HUMAN, Q92952
    Similarity: Belongs to the potassium channel KCNN family. KCa2.1/KCNN1 subfamily


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: KCNN1_HUMAN, Q92952
    Function: Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by
    membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of
    synaptic afterhyperpolarization. The channel is blocked by apamin (By similarity)

         Genatlas biochemistry entry for KCNN1:
    potassium intermediate/small conductance calcium-activated channel,subfamily N member 1,regulating neuronal
    excitabability

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005516calmodulin binding IEA--
    GO:0015269calcium-activated potassium channel activity TAS8781233
    GO:0016286small conductance calcium-activated potassium channel activity IEA--
         
    KCNN1 for ontologies           About GeneDecksing


    Phenotypes:
         2 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Kcnn1):
     nervous system  no phenotypic analysis 

    KCNN1 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Kcnn1tm1.1Jpad for KCNN1
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for KCNN1 

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: KCNN1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat KCNN1
    2 QIAGEN miScript miRNA Assays for microRNAs that regulate KCNN1:
    hsa-miR-3926 hsa-miR-548s
    SwitchGear 3'UTR luciferase reporter plasmidKCNN1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for KCNN1 (see all 7)
    OriGene shRNA RFP: KCNN1
    OriGene siRNA: KCNN1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat KCNN1
    Sirion Biotech Custom design and validation of potent shRNA sequences against KCNN1 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for KCNN1
    Sirion Biotech Customized adenovirus for overexpression of KCNN1 
    Sirion Biotech Customized adenovirus for potent knockdown of KCNN1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for KCNN1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for KCNN1
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: KCNN1 (NM_002248)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for KCNN1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KCNN1 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for KCNN1
    Search LifeMap BioReagents cell lines for KCNN1
    Sirion Biotech Customized stable knockdown cell line services for KCNN1 
    Sirion Biotech Customized inducible knockdown cell line services for KCNN1
    Sirion Biotech Customized stable overexpressing cell line services for KCNN1
    Sirion Biotech Customized inducible overexpressing cell line services for KCNN1

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KCNN1


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Potassium Channels
    Potassium Channels1.00
    Potassium transporters: outward current0.42
    2Ca2+ activated K+ channels
    Ca2+ activated K+ channels1.00
    3Synaptic transmission: ion currents
    Synaptic transmission: ion currents1.00
    4Transmission across Chemical Synapses
    Neuronal System0.67

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    2 EMD Millipore Pathways for KCNN1
        Synaptic transmission- ion currents
    Potassium transporters- outward current


    3        Reactome Pathways for KCNN1
        Potassium Channels
    Ca2+ activated K+ channels
    Neuronal System



    KCNN1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for KCNN1

    STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

    5 Interacting proteins for KCNN1 (Q929523 ENSP000002222494) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCP0CG483, ENSP000003448184I2D: score=1 STRING: ENSP00000344818
    GRB2P629933, ENSP000003390074I2D: score=1 STRING: ENSP00000339007
    MAPK3P273613I2D: score=1 
    KCNN2ENSP000002647734STRING: ENSP00000264773
    KCNN3ENSP000002719154STRING: ENSP00000271915
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006813potassium ion transport TAS8781233
    GO:0007268synaptic transmission TAS--

    KCNN1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    KCNN1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Compounds for KCNN1 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    UCL 1684Highly potent blocker of SKCa[199934-16-2]
    GW 542573XSelective activator of SK1 channels[660846-41-3]
    Apamin K+ channel blocker (small conductance, Ca2+-dependent) [24345-16-2]
    4-AminopyridineNon-selective KV channel blocker[504-24-5]

    1 HMDB Compound for KCNN1    About this table
    CompoundSynonyms CAS #PubMed Ids
    CalciumCa (see all 2)7440-70-2--

    1 DrugBank Compound for KCNN1    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Miconazole-- 22916-47-8targetinhibitor8760033 1376313

    10/17 Novoseek chemical compound relationships for KCNN1 gene (see all 17)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    apamin 88.9 18 17142458 (3), 10696100 (2), 10725258 (1), 11223279 (1) (see all 13)
    dequalinium chloride 81.1 1 10696100 (1)
    scyllatoxin 77.4 1 10696100 (1)
    potassium 76.6 62 10732800 (2), 9774106 (2), 15379997 (2), 12875918 (2) (see all 49)
    sphingosine 74.4 17 20156522 (2), 16522638 (2), 17898040 (1), 16926156 (1) (see all 12)
    charybdotoxin 72.1 2 10725258 (1), 9843105 (1)
    iberiotoxin 65.1 1 10725258 (1)
    d-tubocurarine 65.1 1 10696100 (1)
    clotrimazole 65.1 1 10519135 (1)
    calcium 40.9 27 10204997 (3), 9774106 (2), 15379997 (2), 9326665 (2) (see all 16)

    Search CenterWatch for drugs/clinical trials and news about KCNN1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for KCNN1 gene: 
    NM_002248.4  

    Unigene Cluster for KCNN1:

    Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
    Hs.158173  [show with all ESTs]
    Unigene Representative Sequence: NM_002248
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000222249(uc002nht.3 uc010xqa.1) ENST00000536713

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: KCNN1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat KCNN1
    2 QIAGEN miScript miRNA Assays for microRNAs that regulate KCNN1:
    hsa-miR-3926 hsa-miR-548s
    SwitchGear 3'UTR luciferase reporter plasmidKCNN1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for KCNN1 (see all 7)
    OriGene shRNA RFP: KCNN1
    OriGene siRNA: KCNN1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat KCNN1
    Sirion Biotech Custom design and validation of potent shRNA sequences against KCNN1 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for KCNN1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for KCNN1
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: KCNN1 (NM_002248)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for KCNN1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KCNN1 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for KCNN1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat KCNN1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat KCNN1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat KCNN1

    Additional cDNA sequence: 

    AB198191.1 AK298170.1 BC075037.2 U69883.2 

    3 DOTS entries:

    DT.438112  DT.121438614  DT.97777878 

    24/27 AceView cDNA sequences (see all 27):

    NM_002248 BX106650 BI522613 F11363 U69883 AA594089 BM718136 AA351095 
    AI937237 BC075037 AA325431 F09023 AA350009 BM930603 BF062198 BX393926 
    D61063 AW594619 BE504989 BU153891 C15510 AI825516 D60120 D60321 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    KCNN1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --
    KCNN1 Expression
    About this image

    KCNN1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    KidneyRenal VesicleKidney
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See KCNN1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for KCNN1

    SOURCE GeneReport for Unigene cluster: Hs.158173
        SABiosciences Expression via Pathway-Focused PCR Arrays including KCNN1: 
              Neuronal Ion Channels in human mouse rat
              MAP Kinase (MAPK) Signaling Pathway in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for KCNN1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat KCNN1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat KCNN1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat KCNN1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KCNN1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for KCNN1 gene from 2/8 species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Kcnn11 , 5 potassium intermediate/small conductance calcium-activated more1, 5 82.47(n)1
    84.2(a)1
      8 (34.27 cM)5
    840361  NM_032397.21  NP_115773.21 
     708420495 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.147102 Transcribed sequence with moderate similarity to protein more 80.85(n)    BM082635.1 


    ENSEMBL Gene Tree for KCNN1 (if available)
    TreeFam Gene Tree for KCNN1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for KCNN1 gene
    KCNN42  KCNN22  KCNN32  
    5 SIMAP similar genes for KCNN1 using alignment to 1 protein entry:     KCNN1_HUMAN:
    KCNN3    SK3    SK2    KCNN2    KCNN4

    KCNN1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/780 NCBI SNPs in KCNN1 are shown (see all 780    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1472627191,2
    --18060334(+) CTCATC/TCCATG 1 -- us2k10--------
    rs1396738251,2
    --18060346(+) GGACAC/TATACC 1 -- us2k10--------
    rs1435800181,2
    --18060361(+) CTGGGC/TCTTTG 1 -- us2k10--------
    rs65122381,2
    C,F,A,H--18060457(+) AAACAA/CAATCA 1 -- us2k124Minor allele frequency- C:0.37NS EA NA WA CSA 2353
    rs116728741,2
    C,A,H--18060482(+) CAGCCC/TCCCAG 1 -- us2k15Minor allele frequency- T:0.15NA WA 244
    rs1441917831,2
    --18060650(+) TTTTCC/TCCAGG 1 -- us2k10--------
    rs1860817481,2
    --18061071(+) AGAGCA/CCTGTG 1 -- us2k10--------
    rs1486876311,2
    --18061164(+) TAGGGA/GGAGAA 1 -- us2k10--------
    rs735263761,2
    C--18061263(+) TCGGCC/TTGTGA 1 -- us2k12Minor allele frequency- T:0.07WA 120
    rs72503321,2
    C,F,A,H--18061509(+) GTCACC/TTCTGC 1 -- us2k132Minor allele frequency- N:0.00EA NA NS WA CSA 2988

    HapMap Linkage Disequilibrium report for KCNN1 (18062111 - 18110893 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for KCNN1: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing KCNN1
    DNA2.0 Custom Variant and Variant Library Synthesis for KCNN1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    KCNN1 for disorders           About GeneDecksing

    OMIM gene information: 602982    OMIM disorders: --

    20 diseases for KCNN1:    About MalaCards
    myotonic dystrophy type 1    traumatic brain injury    myotonic dystrophy    bipolar affective disorder
    brain injury    neuronitis    fanconi's anemia    muscular dystrophy
    migraine    bipolar disorder    parkinson's disease    anemia
    alzheimer's disease    schizophrenia    ischemia    ataxia
    retinitis    tuberculosis    melanoma    mycobacterium tuberculosis

    2 Novoseek disease relationships for KCNN1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    schizophrenia 29.9 4 10732800 (1), 10395217 (1), 10196711 (1)
    glioma 0 1 8051694 (1)


    Export disorders for KCNN1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for KCNN1 gene, integrated from 9 sources (see all 93):
    (articles sorted by number of sources associating them with KCNN1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Gene structure and chromosome mapping of the human small-conductance calcium-activated potassium channel SK1 gene (KCNN1). (PubMed id 10516439)1, 2, 3, 9 Litt M.... Adelman J.P. (1999)
    2. Small-conductance, calcium-activated potassium channels from mammalian brain. (PubMed id 8781233)1, 2, 3 Koehler M.... Adelman J.P. (1996)
    3. International Union of Pharmacology. LII. Nomenclature and molecular relationships of calcium-activated potassium channels. (PubMed id 16382103)1, 3 Wei A.D....Wulff H. (2005)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Calmodulin binding to the C-terminus of the small-conductance Ca2+-activated K+ channel hSK1 is affected by alternative splicing. (PubMed id 11258935)1, 9 Zhang B.M....Sullivan R. (2001)
    6. The pharmacology of hSK1 Ca2+-activated K+ channels expressed in mammalian cell lines. (PubMed id 10683185)1, 9 Shah M. and Haylett D.G. (2000)
    7. Quantitative expression analysis of the small conductance calcium-activated potassium channels, SK1, SK2 and SK3, in human brain. (PubMed id 11146124)1, 9 Rimini R....Terstappen G.C. (2000)
    8. Decreased expression of small-conductance Ca2+-activat ed K+ channels SK1 and SK2 in human chronic atrial fibrillation. (PubMed id 22154908)1 Yu T....Lin Q. (2012)
    9. TLR8-dependent TNF-(alpha) overexpression in Fanconi anemia group C cells. (PubMed id 19850743)1 Vanderwerf S.M....Bagby G.C. (2009)
    10. Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening. (PubMed id 17474147)1 Wu C....Li S.S. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 3780 HGNC: 6290 AceView: KCNN1 Ensembl:ENSG00000105642 euGenes: HUgn3780
    ECgene: KCNN1 H-InvDB: KCNN1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for KCNN1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for KCNN1 gene:
    Search GeneIP for patents involving KCNN1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     Browse for Gene Knock-down Tools from EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse Kits and Assays available from EMD Millipore
     Browse Small Molecules at EMD Millipore
     EMD Millipore Mono- and Polyclonal Antibodies for the study of KCNN1
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for KCNN1  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for KCNN1   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for KCNN1  
     OriGene Protein Over-expression Lysate for KCNN1   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for KCNN1   OriGene 3'-UTR Clone for KCNN1  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for KCNN1   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for KCNN1  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for KCNN1   OriGene Custom Protein Services for KCNN1  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat KCNN1
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing KCNN1
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat KCNN1
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat KCNN1
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat KCNN1
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat KCNN1
     GenScript Custom Purified and Recombinant Proteins Services for KCNN1 GenScript cDNA clones with any tag delivered in your preferred vector for KCNN1
     GenScript Custom Assay Services for KCNN1 GenScript Custom Superior Antibodies Services for KCNN1
     GenScript Custom overexpressing Cell Line Services for KCNN1 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in KCNN1 promoter
     Search Chromatin IP Primers for KCNN1
     RT2 qPCR Primer Assay in human, mouse, rat KCNN1
     GNC Network for KCNN1
     SABiosciences PCR Arrays including human, mouse, rat KCNN1
     Tocris compounds for KCNN1
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     KCNN1 antibodies
     KCNN1 lysates
     Antibodies for KCNN1
     See all of Abcam's Antibodies, Kits and Proteins for KCNN1
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     KCNN1 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for KCNN1
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KCNN1
     SwitchGear 3'UTR luciferase reporter plasmids for KCNN1
     SwitchGear Promoter luciferase reporter plasmids for KCNN1
     Search ThermoFisher Antibodies for KCNN1
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KCNN1
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for KCNN1
    Sirion Biotech Customized:
     stable knockdown cell line services for KCNN1
     inducible knockdown cell line services for KCNN1
     design and validation of potent shRNA sequences against KCNN1
     adenovirus for potent knockdown of KCNN1
     adenovirus for overexpression of KCNN1
     stable overexpressing cell line services for KCNN1
     inducible overexpressing cell line services for KCNN1
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      KCNN1 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4