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KCNMA1-AS3 Gene(RNA Gene)

KCNMA1 Antisense RNA 3

GCID:
GC10P077354
GIFtS:
16
Genes Participants
UDN Logo

Aliases for KCNMA1-AS3 Gene

Subcategory (RNA class) for KCNMA1-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNMA1-AS3 Gene

  • KCNMA1 Antisense RNA 3 2 3 5

External Ids for KCNMA1-AS3 Gene

Summaries for KCNMA1-AS3 Gene

GeneCards Summary for KCNMA1-AS3 Gene

KCNMA1-AS3 (KCNMA1 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNMA1-AS3 Gene

Genomics for KCNMA1-AS3 Gene

Products:

  1. Regulatory Element

Regulatory Elements for KCNMA1-AS3 Gene

Enhancers for KCNMA1-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G077390 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +41.7 41656 4.6 HDGF CREB3L1 SIN3A FEZF1 YY1 ZNF766 ZNF143 FOS KLF13 ZNF263 KCNMA1 KCNMA1-AS3 LOC105378369
GH10G077162 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -186.5 -186536 4.5 ATF1 PKNOX1 FOXA2 SIN3A ZNF766 GATA2 ZNF143 FOS REST MBD2 POLR3A KCNMA1 KCNMA1-AS3 KCNMA1-AS2 GC10P077253
GH10G077385 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +36.4 36353 2.6 ARNT ZSCAN4 RAD21 GATA2 SCRT2 FOS EGR2 ZEB2 ZNF592 NR2F2 KCNMA1 KCNMA1-AS3 ENSG00000224500 LOC105378369
GH10G077179 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -171.2 -171206 1.2 BCOR ESRRA PKNOX1 TEAD4 SIN3A ZMYM3 THRB RAD21 FOS MAFK KCNMA1 KCNMA1-AS3 KCNMA1-AS2 GC10P077253
GH10G077288 1.2 Ensembl ENCODE 10.8 -59.7 -59748 4.3 SIN3A FEZF1 FOS KDM4B ZNF263 NFYC JUNB REST TSHZ1 ZNF488 KCNMA1 ENSG00000224500 KCNMA1-AS3 GC10P077253
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNMA1-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for KCNMA1-AS3 Gene

Chromosome:
10
Start:
77,350,872 bp from pter
End:
77,376,613 bp from pter
Size:
25,742 bases
Orientation:
Plus strand

Genomic View for KCNMA1-AS3 Gene

Genes around KCNMA1-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNMA1-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNMA1-AS3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for KCNMA1-AS3 Gene

Proteins for KCNMA1-AS3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for KCNMA1-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNMA1-AS3 Gene

Domains & Families for KCNMA1-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNMA1-AS3 Gene

Function for KCNMA1-AS3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNMA1-AS3 Gene

Localization for KCNMA1-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCNMA1-AS3 Gene

Pathways & Interactions for KCNMA1-AS3 Gene

SuperPathways for KCNMA1-AS3 Gene

PathCards logo More details on SuperPathways for KCNMA1-AS3
No Data Available

Interacting Proteins for KCNMA1-AS3 Gene

Gene Ontology (GO) - Biological Process for KCNMA1-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNMA1-AS3 Gene

Drugs & Compounds for KCNMA1-AS3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for KCNMA1-AS3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for KCNMA1-AS3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNMA1-AS3 Gene

No ASD Table

Relevant External Links for KCNMA1-AS3 Gene

GeneLoc Exon Structure for
KCNMA1-AS3
ECgene alternative splicing isoforms for
KCNMA1-AS3

Expression for KCNMA1-AS3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNMA1-AS3 Gene

mRNA expression in normal human tissues for KCNMA1-AS3 Gene
mRNA expression by GTEx for KCNMA1-AS3 Gene
genes like me logo Genes that share expression patterns with KCNMA1-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNMA1-AS3 Gene

Orthologs for KCNMA1-AS3 Gene

Evolution for KCNMA1-AS3 Gene

ENSEMBL:
Gene Tree for KCNMA1-AS3 (if available)
TreeFam:
Gene Tree for KCNMA1-AS3 (if available)

No data available for Orthologs for KCNMA1-AS3 Gene

Paralogs for KCNMA1-AS3 Gene

No data available for Paralogs for KCNMA1-AS3 Gene

Variants for KCNMA1-AS3 Gene

Sequence variations from dbSNP and Humsavar for KCNMA1-AS3 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000097125 -- 77,372,297(+) CCATC(A/G)CTGCC intron-variant, utr-variant-3-prime
rs1000106090 -- 77,366,412(+) GATCC(A/G)CCCAC intron-variant, downstream-variant-500B
rs1000179285 -- 77,354,344(+) GCGTC(C/T)GTTAC intron-variant
rs1000441144 -- 77,355,502(+) TGCCA(C/T)TTCCT intron-variant
rs1000484572 -- 77,367,387(+) GGAAT(A/G)AAATG intron-variant, utr-variant-3-prime

Relevant External Links for KCNMA1-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNMA1-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNMA1-AS3 Gene

Disorders for KCNMA1-AS3 Gene

Relevant External Links for KCNMA1-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCNMA1-AS3

No disorders were found for KCNMA1-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNMA1-AS3 Gene

Publications for KCNMA1-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for KCNMA1-AS3 Gene

Sources for KCNMA1-AS3 Gene

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