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KCNK4-TEX40 Gene(RNA Gene)

KCNK4-TEX40 Readthrough

GCID:
GC11P064293
GIFtS:
8
Genes Participants
UDN Logo

Aliases for KCNK4-TEX40 Gene

Subcategory (RNA class) for KCNK4-TEX40 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for KCNK4-TEX40 Gene

  • KCNK4-TEX40 Readthrough 3 5

External Ids for KCNK4-TEX40 Gene

Summaries for KCNK4-TEX40 Gene

Entrez Gene Summary for KCNK4-TEX40 Gene

  • This locus represents naturally occurring readthrough transcription between the neighboring KCNK4 (potassium channel subfamily K member 4) and the downstream TEX40 (testis expressed 40) chromosome 11. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Nov 2015]

GeneCards Summary for KCNK4-TEX40 Gene

KCNK4-TEX40 (KCNK4-TEX40 Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNK4-TEX40 Gene

Genomics for KCNK4-TEX40 Gene

Products:

  1. Regulatory Element

Regulatory Elements for KCNK4-TEX40 Gene

Enhancers for KCNK4-TEX40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G064320 1.4 Ensembl ENCODE dbSUPER 12.2 +31.4 31398 5.3 HDAC1 KLF17 NFXL1 RAD21 ZNF366 EGR1 SCRT2 EGR2 ZNF263 ZBTB2 PLCB3 LOC102723878 ENSG00000257086 CATSPERZ ENSG00000207024 KCNK4 KCNK4-TEX40 BAD GPR137 TRMT112
GH11G064205 1.4 ENCODE dbSUPER 11.5 -84.1 -84127 4.4 HDGF PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZFPL1 TRPT1 ENSG00000257086 PLCB3 TRMT112 GPR137 BAD KCNK4 KCNK4-TEX40 ENSG00000207024
GH11G064347 0.8 ENCODE 11.5 +56.7 56660 1.9 BCOR KLF1 JUN CHD4 ZMYM3 MAX CEBPG ZNF366 POLR2A FOXK2 LOC102723878 MIR1237 PRDX5 TRMT112 ESRRA CATSPERZ ENSG00000207024 KCNK4 KCNK4-TEX40 BAD
GH11G064290 0.8 Ensembl 0.7 +0.4 436 2.6 MXI1 RB1 SUZ12 AGO1 ASH2L RAD21 ZFHX2 POLR2A EZH2 L3MBTL2 TRMT112 GC11P064297 KCNK4-TEX40
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNK4-TEX40 on UCSC Golden Path with GeneCards custom track

Genomic Location for KCNK4-TEX40 Gene

Chromosome:
11
Start:
64,291,722 bp from pter
End:
64,304,769 bp from pter
Size:
13,048 bases
Orientation:
Plus strand

Genomic View for KCNK4-TEX40 Gene

Genes around KCNK4-TEX40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNK4-TEX40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNK4-TEX40 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for KCNK4-TEX40 Gene

Proteins for KCNK4-TEX40 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for KCNK4-TEX40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNK4-TEX40 Gene

Domains & Families for KCNK4-TEX40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNK4-TEX40 Gene

Function for KCNK4-TEX40 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNK4-TEX40 Gene

Localization for KCNK4-TEX40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCNK4-TEX40 Gene

Pathways & Interactions for KCNK4-TEX40 Gene

SuperPathways for KCNK4-TEX40 Gene

PathCards logo More details on SuperPathways for KCNK4-TEX40
No Data Available

Interacting Proteins for KCNK4-TEX40 Gene

Gene Ontology (GO) - Biological Process for KCNK4-TEX40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNK4-TEX40 Gene

Drugs & Compounds for KCNK4-TEX40 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for KCNK4-TEX40 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for KCNK4-TEX40 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNK4-TEX40 Gene

No ASD Table

Relevant External Links for KCNK4-TEX40 Gene

GeneLoc Exon Structure for
KCNK4-TEX40

Expression for KCNK4-TEX40 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNK4-TEX40 Gene

Orthologs for KCNK4-TEX40 Gene

Evolution for KCNK4-TEX40 Gene

ENSEMBL:
Gene Tree for KCNK4-TEX40 (if available)
TreeFam:
Gene Tree for KCNK4-TEX40 (if available)

No data available for Orthologs for KCNK4-TEX40 Gene

Paralogs for KCNK4-TEX40 Gene

No data available for Paralogs for KCNK4-TEX40 Gene

Variants for KCNK4-TEX40 Gene

Sequence variations from dbSNP and Humsavar for KCNK4-TEX40 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000079532 -- 64,293,184(+) GCGAC(A/C)AGGAG intron-variant, nc-transcript-variant, reference, missense
rs1000451236 -- 64,293,623(+) TGAGA(C/T)GGAGT intron-variant
rs1000676012 -- 64,292,303(+) ACCCC(C/G)GCCCC intron-variant
rs1000811738 -- 64,292,137(+) GCGGG(A/G)CGGCG intron-variant
rs1001526080 -- 64,294,355(+) TCTAC(C/T)AAAAA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for KCNK4-TEX40 Gene

Disorders for KCNK4-TEX40 Gene

Relevant External Links for KCNK4-TEX40

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCNK4-TEX40

No disorders were found for KCNK4-TEX40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNK4-TEX40 Gene

Publications for KCNK4-TEX40 Gene

  1. Cloning of two transcripts, HKT4.1a and HKT4.1b, from the human two- pore K+ channel gene KCNK4. Chromosomal localization, tissue distribution and functional expression. (PMID: 12191490) Ozaita A. … Vega-Saenz de Miera E. (Brain Res. Mol. Brain Res. 2002) 3 64

Products for KCNK4-TEX40 Gene

Sources for KCNK4-TEX40 Gene

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