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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

KCNK13 Gene

protein-coding   GIFtS: 51
GCID: GC14P090528

potassium channel, subfamily K, member 13

  Search for KCNK13
in our new
 Human Malady Compendium 
Biological research products
for KCNK13
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Potassium Channel, Subfamily K, Member 131 2     Tandem Pore Domain Halothane-Inhibited Potassium Channel 12 3
THIK-11 2 3     K2P13.1 Potassium Channel2
THIK11 2 5     Potassium Channel Subfamily K Member 132
K2p13.11 2     Tandem Pore Domain Potassium Channel THIK-12

External Ids:    HGNC: 62751   Entrez Gene: 566592   Ensembl: ENSG000001523157   OMIM: 6073675   UniProtKB: Q9HB143   

Export aliases for KCNK13 gene to outside databases

Previous GC identifers: GC14P088033 GC14P084344 GC14P088518 GC14P089597 GC14P070702


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for KCNK13:
This gene encodes one of the members of the superfamily of potassium channel proteins containing two pore-forming
domains. The product of this gene is an open channel that can be stimulated by arachidonic acid. (provided by RefSeq,
Jul 2008)

UniProtKB/Swiss-Prot: KCNKD_HUMAN, Q9HB14
Function: Potassium channel displaying weak inward rectification in symmetrical K(+) solution (By similarity)

Gene Wiki entry for KCNK13


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NC_018925.1  NT_026437.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the KCNK13 gene promoter:
         AhR   HOXA3   ATF-2   XBP-1   NF-kappaB   Arnt   PPAR-alpha   FAC1   NF-kappaB2   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKCNK13 promoter sequence
   Search SABiosciences Chromatin IP Primers for KCNK13

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat KCNK13


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.11   Ensembl cytogenetic band:  14q32.11   HGNC cytogenetic band: 14q32.11

KCNK13 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KCNK13 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P090528:  view genomic region     (about GC identifiers)

Start:
90,528,108 bp from pter      End:
90,652,201 bp from pter
Size:
124,094 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: KCNKD_HUMAN, Q9HB14 (See protein sequence)
Recommended Name: Potassium channel subfamily K member 13  
Size: 408 amino acids; 45391 Da
Subunit: Homodimer (Potential)
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Miscellaneous: The current is enhanced by arachidonic acid and inhibited by halothane (By similarity)
Secondary accessions: Q96E79

Explore the universe of human proteins at neXtProt for KCNK13: NX_Q9HB14

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9HB14

  • KCNK13 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_071337.2  
    ENSEMBL proteins: 
     ENSP00000282146  
    Reactome Protein details: Q9HB14
    Human Recombinant Protein Products: 
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    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for KCNK13

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016021integral to membrane IEA--


    KCNK13 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    KCNK13 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR003280 2pore_dom_K_chnl
     IPR005410 2pore_dom_K_chnl_THIK
     IPR013099 Ion_trans_2

    Graphical View of Domain Structure for InterPro Entry Q9HB14

    ProtoNet protein and cluster: Q9HB14

    3 Blocks protein families:
    IPB003280 Two pore domain K+ channel signature
    IPB005410 THIK K+ channel signature
    IPB013099 Ion transport 2


    UniProtKB/Swiss-Prot: KCNKD_HUMAN, Q9HB14
    Similarity: Belongs to the two pore domain potassium channel (TC 1.A.1.8) family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: KCNKD_HUMAN, Q9HB14
    Function: Potassium channel displaying weak inward rectification in symmetrical K(+) solution (By similarity)

    miRNA
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005244voltage-gated ion channel activity IEA--
    GO:0005267potassium channel activity TAS--


    KCNK13 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for KCNK13:
     Increased gamma-H2AX phosphory 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/9 super-pathways (see all 9About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Sweet Taste Signaling
    Sweet Taste Signaling1.00
    Bitter Taste Signaling0.44
    Melatonin Signaling0.72
    Sperm Motility0.36
    Cellular Effects of Sildenafil0.46
    2Activation of cAMP-Dependent PKA
    Activation of cAMP-Dependent PKA1.00
    PKA Signaling0.56
    cAMP Pathway0.77
    3Neuropathic Pain-Signaling in Dorsal Horn Neurons
    Neuropathic Pain-Signaling in Dorsal Horn Neurons1.00
    Cholera Infection0.40
    Aldosterone Signaling in Epithelial Cells0.47
    4Hepatic ABC Transporters
    Hepatic ABC Transporters1.00
    MODY (Maturity-Onset Diabetes of Young)0.41
    5Potassium Channels
    Potassium Channels1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for KCNK13
        Potassium transporters- inward current

    5/13 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for KCNK13 (see all 13)
        Cholera Infection
    Neuropathic Pain-Signaling in Dorsal Horn Neurons
    Hepatic ABC Transporters
    PKA Signaling
    Sweet Taste Signaling

    4        Reactome Pathways for KCNK13
        Potassium Channels
    Tandem pore domain halothane-inhibited K+ channel (THIK)
    Neuronal System
    Tandem pore domain potassium channels



    KCNK13 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for KCNK13

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007268synaptic transmission TAS--
    GO:0071805potassium ion transmembrane transport ----


    KCNK13 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Compounds for KCNK13 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    YS-035 hydrochlorideInhibits K+ outward/pacemaker current[33978-72-2]
    DMP 543K+ channel blocker and potent ACh release enhancer[160588-45-4]
    Search CenterWatch for drugs/clinical trials and news about KCNK13 / KCNKD 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for KCNK13 gene: 
    NM_022054.2  

    Unigene Cluster for KCNK13:

    Potassium channel, subfamily K, member 13
    Hs.510191  [show with all ESTs]
    Unigene Representative Sequence: BC012779
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000282146(uc001xye.1)

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    hsa-miR-3140-3p hsa-miR-186 hsa-miR-3121-3p hsa-miR-3662
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    Inhib. RNA
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    Additional cDNA sequence: 

    AF287303.1 BC012779.2 EU978942.1 

    1 DOTS entry:

    DT.75100365 

    12 AceView cDNA sequences:

    BX283120 BE797552 AF287303 BC012779 AI825602 AI953140 NM_022054 BF589078 
    AW117567 AI653378 AI806646 BI908934 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    KCNK13 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    KCNK13 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    BoneMaxillary ProcessBone
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See KCNK13 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for KCNK13

    SOURCE GeneReport for Unigene cluster: Hs.510191
        SABiosciences Custom PCR Arrays for KCNK13
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for KCNK13 gene from 4/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves KCNK131 potassium channel, subfamily K, member 13 79.9(n)
    81.66(a)
      772210  XM_001235375.1  XP_001235376.1 
    lizard
    (Anolis carolinensis)
    Reptilia KCNK136
    KCNK126
    --
    73(a)
    59(a)
    1 ↔ 1
    possible ortholog
    1(12716320-12778223)
    1(254990917-254991252)
    zebrafish
    (Danio rerio)
    Actinopterygii kcnk13a1 potassium channel, subfamily K, member 13a 67.92(n)
    70.43(a)
      571467  NM_001110117.1  NP_001103587.1 
    worm
    (Caenorhabditis elegans)
    Secernentea twk-123
    twk-141
    potassium channel protein3
    Protein TWK-141
    38(a)3
    47.84(n)1
    37.46(a)1
      V(12390060-12391487)3
    1796991  NM_073702.21  NP_506103.21 


    ENSEMBL Gene Tree for KCNK13 (if available)
    TreeFam Gene Tree for KCNK13 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for KCNK13 gene
    KCNK152  KCNK52  KCNK162  KCNK32  KCNK122  KCNK92  KCNK62  KCNK22  
    KCNK182  KCNK172  KCNK102  KCNK72  KCNK42  KCNK12  
    1 SIMAP similar gene for KCNK13 using alignment to 2 protein entries:     KCNKD_HUMAN (see all proteins):
    KCNK12

    KCNK13 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/2407 NCBI SNPs in KCNK13 are shown (see all 2407    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2017967461,2
    --90526175(+) AAAGG-/AAAAAA 1 -- us2k10--------
    rs1448794971,2
    --90526382(+) GGGTAC/TACGGG 1 -- us2k10--------
    rs1124823051,2
    C,--90526401(+) TAAAATTCT/-  
            
    TTCAA
    1 -- us2k11Minor allele frequency- -:0.00CSA 2
    rs568459021,2
    C--90526404(+) AATTCTTTC/-  
            
    AACTT
    1 -- us2k11Minor allele frequency- -:0.00NA 2
    rs1446373821,2
    --90526470(+) CTCACC/TCTGGG 1 -- us2k10--------
    rs1867405591,2
    --90526484(+) ATACAC/TATGCA 1 -- us2k10--------
    rs1919915831,2
    --90526550(+) GGGCAC/TTGGGG 1 -- us2k10--------
    rs1386758531,2
    --90526592(+) AGCACC/TAGGGT 1 -- us2k10--------
    rs1403671481,2
    --90526755(+) GAAGAC/TGCCCA 1 -- us2k10--------
    rs80089701,2
    C,F,--90526839(+) CTGTGT/AGCGCG 1 -- us2k14Minor allele frequency- A:0.15NA WA 124

    HapMap Linkage Disequilibrium report for KCNK13 (90528108 - 90652201 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for KCNK13: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing KCNK13
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    KCNK13 for disorders           About MalaCards

    KCNK13 for disorders           About GeneDecksing

    OMIM gene information: 607367    OMIM disorders: --

    Human Genome Epidemiology (HuGE) Navigator: KCNK13 (1 document)

    Export disorders for KCNK13 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for KCNK13 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with KCNK13)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. THIK-1 and THIK-2, a novel subfamily of tandem pore domain K+ channels. (PubMed id 11060316)1, 2, 3, 9 Rajan S.... Derst C. (2001)
    2. International Union of Pharmacology. LV. Nomenclature and molecular relationships of two-P potassium channels. (PubMed id 16382106)1, 3 Goldstein S.A....Rajan S. (2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Cellular localization of THIK-1 (K(2P)13.1) and THIK-2 (K(2P)12.1) K channels in the mammalian kidney. (PubMed id 18209473)1, 9 Theilig F....Derst C. (2008)
    5. Genomic variation associated with mortality among adu lts of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium. (PubMed id 20400778)1 Morrison A.C....Smith N.L. (2010)
    6. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    7. Regulation of two-pore-domain (K2P) potassium leak channels by the tyrosine kinase inhibitor genistein. (PubMed id 18516069)1 Gierten J....Thomas D. (2008)
    8. Acute hypoxic regulation of recombinant THIK-1 stably expressed in HEK293 cells. (PubMed id 16683720)1 Fearon I.M....Nurse C.A. (2006)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    10. Potassium leak channels and the KCNK family of two-P-domain subunits. (PubMed id 11256078)1 Goldstein S.A....Zilberberg N. (2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 56659 HGNC: 6275 AceView: KCNK13 Ensembl:ENSG00000152315 euGenes: HUgn56659
    ECgene: KCNK13 H-InvDB: KCNK13

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for KCNK13 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for KCNK13 gene:
    Search GeneIP for patents involving KCNK13

    GeneCards and IP:
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