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Aliases for KCNJ6-AS1 Gene

Subcategory (RNA class) for KCNJ6-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNJ6-AS1 Gene

  • KCNJ6 Antisense RNA 1 2 3 5
  • KCNJ6 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • KCNJ6-IT1 3

External Ids for KCNJ6-AS1 Gene

Previous HGNC Symbols for KCNJ6-AS1 Gene

  • KCNJ6-IT1

Previous GeneCards Identifiers for KCNJ6-AS1 Gene

  • GC21M039091
  • GC21M037717

Summaries for KCNJ6-AS1 Gene

GeneCards Summary for KCNJ6-AS1 Gene

KCNJ6-AS1 (KCNJ6 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNJ6-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNJ6-AS1 Gene

Genomics for KCNJ6-AS1 Gene

Regulatory Elements for KCNJ6-AS1 Gene

Enhancers for KCNJ6-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H037562 2.1 FANTOM5 Ensembl ENCODE dbSUPER 17.4 -150.7 -150651 5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF766 ENSG00000242553 DYRK1A KCNJ6-AS1 ENSG00000224790 TTC3 LOC105372798 GC21M037650
GH21H037582 0.7 dbSUPER 16.2 -133.4 -133392 0 CTCF CEBPG RAD21 CC2D1A FOXK2 SMC3 ZNF143 ZNF654 HCFC1 E2F5 KCNJ6-AS1 LOC105372798 GC21M037650
GH21H037590 0.6 ENCODE 16.7 -123.0 -123008 3 DPF2 ZIC2 ETS1 OSR2 ZNF121 IKZF1 ZSCAN5C ZNF18 MGA KCNJ6-AS1 PIGP LOC105372798 GC21M037650
GH21H037546 1.2 ENCODE dbSUPER 8.3 -168.4 -168428 1 PKNOX1 FEZF1 ZNF121 GATA2 KLF7 SP3 TSHZ1 ZNF488 SMARCB1 ZNF623 ENSG00000242553 DYRK1A KCNJ6-AS1 PIR42486 GC21M037562 PIR60123
GH21H037574 0.5 dbSUPER 18.2 -140.3 -140338 2 ZNF121 SCRT2 ZSCAN29 ATF7 ATF2 KCNJ6-AS1 MRPL20P1 ENSG00000207416 HLCS LOC105372798 GC21M037650
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNJ6-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KCNJ6-AS1 Gene

Chromosome:
21
Start:
37,715,917 bp from pter
End:
37,739,035 bp from pter
Size:
23,119 bases
Orientation:
Plus strand

Genomic View for KCNJ6-AS1 Gene

Genes around KCNJ6-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNJ6-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNJ6-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNJ6-AS1 Gene

Proteins for KCNJ6-AS1 Gene

Post-translational modifications for KCNJ6-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNJ6-AS1 Gene

Domains & Families for KCNJ6-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNJ6-AS1 Gene

Function for KCNJ6-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for KCNJ6-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNJ6-AS1 Gene

Localization for KCNJ6-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNJ6-AS1 Gene

Pathways & Interactions for KCNJ6-AS1 Gene

SuperPathways for KCNJ6-AS1 Gene

No Data Available

Interacting Proteins for KCNJ6-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNJ6-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNJ6-AS1 Gene

Drugs & Compounds for KCNJ6-AS1 Gene

No Compound Related Data Available

Transcripts for KCNJ6-AS1 Gene

mRNA/cDNA for KCNJ6-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for KCNJ6-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for KCNJ6-AS1 Gene

No ASD Table

Relevant External Links for KCNJ6-AS1 Gene

GeneLoc Exon Structure for
KCNJ6-AS1
ECgene alternative splicing isoforms for
KCNJ6-AS1

Expression for KCNJ6-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNJ6-AS1 Gene

genes like me logo Genes that share expression patterns with KCNJ6-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNJ6-AS1 Gene

Orthologs for KCNJ6-AS1 Gene

Evolution for KCNJ6-AS1 Gene

ENSEMBL:
Gene Tree for KCNJ6-AS1 (if available)
TreeFam:
Gene Tree for KCNJ6-AS1 (if available)

No data available for Orthologs for KCNJ6-AS1 Gene

Paralogs for KCNJ6-AS1 Gene

No data available for Paralogs for KCNJ6-AS1 Gene

Variants for KCNJ6-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNJ6-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs786204794 Pathogenic 37,714,700(-) AACCA(-/CCA)TTGGT downstream-variant-500B, upstream-variant-2KB, cds-indel
rs786204795 Pathogenic 37,714,697(-) CCATT(A/G)GTTAT downstream-variant-500B, upstream-variant-2KB, reference, missense
rs1000012826 -- 37,721,773(+) AACAG(A/G)GATCA intron-variant
rs1000064337 -- 37,715,116(+) AGTCG(A/C)CCTCC upstream-variant-2KB, reference, missense
rs1000225617 -- 37,725,364(+) CTCCA(A/G)CCTGG intron-variant

Relevant External Links for KCNJ6-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNJ6-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNJ6-AS1 Gene

Disorders for KCNJ6-AS1 Gene

No disorders were found for KCNJ6-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KCNJ6-AS1 Gene

Publications for KCNJ6-AS1 Gene

No publications were found for KCNJ6-AS1 Gene.

Products for KCNJ6-AS1 Gene

Sources for KCNJ6-AS1 Gene

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