Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KCNJ2-AS1 Gene

Subcategory (RNA class) for KCNJ2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNJ2-AS1 Gene

  • KCNJ2 Antisense RNA 1 (Head To Head) 2 3 5
  • KCNJ2 Antisense RNA 1 (Non-Protein Coding) 2
  • KCNJ2 Antisense RNA 1 2

External Ids for KCNJ2-AS1 Gene

Previous GeneCards Identifiers for KCNJ2-AS1 Gene

  • GC17M068164

Summaries for KCNJ2-AS1 Gene

GeneCards Summary for KCNJ2-AS1 Gene

KCNJ2-AS1 (KCNJ2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNJ2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNJ2-AS1 Gene

Genomics for KCNJ2-AS1 Gene

GeneHancer (GH) Regulatory Elements for KCNJ2-AS1 Gene

Promoters and enhancers for KCNJ2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I070167 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.3 -250 4.3 ZNF133 SIN3A GLIS2 ZNF143 ATF7 REST ZNF592 ATF4 CBX8 PRDM4 GC17M070164 KCNJ2 KCNJ2-AS1 GC17M070172
GH17I070136 Enhancer 1.3 FANTOM5 Ensembl ENCODE 4.7 +31.5 31493 2.6 PKNOX1 FEZF1 BATF IRF4 RAD21 RFX5 ZNF335 ZNF366 ZSCAN5C ATF7 KCNJ2 KCNJ2-AS1 LOC105371881 LOC105371882
GH17I070173 Enhancer 0.5 dbSUPER 7 -4.4 -4423 1.6 MAFF JUND POLR2A JUN CEBPB EP300 GC17M070172 KCNJ2-AS1 KCNJ2 CALM2P1
GH17I070156 Enhancer 0.5 dbSUPER 6.3 +10.4 10408 4.7 ZNF664 JUND POLR2A JUN LOC105371882 LOC105371881 KCNJ2-AS1 KCNJ2
GH17I070309 Enhancer 0.4 ENCODE 7.6 -141.0 -140964 1 OSR2 PRDM6 POLR2A KCNJ2-AS1 GC17M070291 GC17P070324
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KCNJ2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNJ2-AS1 Gene

Genomic Locations for KCNJ2-AS1 Gene
chr17:70,166,961-70,169,402
(GRCh38/hg38)
Size:
2,442 bases
Orientation:
Minus strand
chr17:68,163,102-68,165,543
(GRCh37/hg19)

Genomic View for KCNJ2-AS1 Gene

Genes around KCNJ2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNJ2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNJ2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNJ2-AS1 Gene

Proteins for KCNJ2-AS1 Gene

Post-translational modifications for KCNJ2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNJ2-AS1 Gene

Domains & Families for KCNJ2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNJ2-AS1 Gene

Function for KCNJ2-AS1 Gene

genes like me logo Genes that share phenotypes with KCNJ2-AS1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNJ2-AS1 Gene

Localization for KCNJ2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNJ2-AS1 Gene

Pathways & Interactions for KCNJ2-AS1 Gene

SuperPathways for KCNJ2-AS1 Gene

No Data Available

Interacting Proteins for KCNJ2-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNJ2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNJ2-AS1 Gene

Drugs & Compounds for KCNJ2-AS1 Gene

No Compound Related Data Available

Transcripts for KCNJ2-AS1 Gene

mRNA/cDNA for KCNJ2-AS1 Gene

(2) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KCNJ2-AS1 Gene

KCNJ2 antisense RNA 1 (head to head):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNJ2-AS1 Gene

No ASD Table

Relevant External Links for KCNJ2-AS1 Gene

GeneLoc Exon Structure for
KCNJ2-AS1
ECgene alternative splicing isoforms for
KCNJ2-AS1

Expression for KCNJ2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNJ2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNJ2-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.1) and Brain - Spinal cord (cervical c-1) (x4.6).

SOURCE GeneReport for Unigene cluster for KCNJ2-AS1 Gene:

Hs.225661
genes like me logo Genes that share expression patterns with KCNJ2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNJ2-AS1 Gene

Orthologs for KCNJ2-AS1 Gene

Evolution for KCNJ2-AS1 Gene

ENSEMBL:
Gene Tree for KCNJ2-AS1 (if available)
TreeFam:
Gene Tree for KCNJ2-AS1 (if available)

No data available for Orthologs for KCNJ2-AS1 Gene

Paralogs for KCNJ2-AS1 Gene

No data available for Paralogs for KCNJ2-AS1 Gene

Variants for KCNJ2-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNJ2-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1019127746 uncertain-significance, Familial atrial fibrillation, short QT syndrome, Andersen Tawil syndrome 70,169,660(-) C/A/G/T upstream_transcript_variant
rs370696463 uncertain-significance, Familial atrial fibrillation, Andersen Tawil syndrome, short QT syndrome 70,169,569(-) C/A upstream_transcript_variant
rs566186294 likely-benign, short QT syndrome, Familial atrial fibrillation, Andersen Tawil syndrome 70,169,604(-) T/C upstream_transcript_variant
rs765064661 uncertain-significance, likely-benign, Familial atrial fibrillation, Andersen Tawil syndrome, short QT syndrome, not specified 70,169,690(-) C/T upstream_transcript_variant
rs1047672419 likely-benign, not specified 70,169,712(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for KCNJ2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv2131 CNV deletion 18451855
nsv483015 CNV loss 15286789
nsv498875 CNV loss 21111241
nsv833528 CNV loss 17160897

Additional Variant Information for KCNJ2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNJ2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNJ2-AS1 Gene

Disorders for KCNJ2-AS1 Gene

Additional Disease Information for KCNJ2-AS1

No disorders were found for KCNJ2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNJ2-AS1 Gene

Publications for KCNJ2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for KCNJ2-AS1 Gene

Sources for KCNJ2-AS1 Gene

Content
Loading form....