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Aliases for KCNJ2-AS1 Gene

Subcategory (RNA class) for KCNJ2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNJ2-AS1 Gene

  • KCNJ2 Antisense RNA 1 (Head To Head) 2 3 5
  • KCNJ2 Antisense RNA 1 (Non-Protein Coding) 2
  • KCNJ2 Antisense RNA 1 2

External Ids for KCNJ2-AS1 Gene

Previous GeneCards Identifiers for KCNJ2-AS1 Gene

  • GC17M068164

Summaries for KCNJ2-AS1 Gene

GeneCards Summary for KCNJ2-AS1 Gene

KCNJ2-AS1 (KCNJ2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNJ2-AS1 Gene

Genomics for KCNJ2-AS1 Gene

Regulatory Elements for KCNJ2-AS1 Gene

Enhancers for KCNJ2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G070136 1.5 FANTOM5 Ensembl ENCODE 4.7 +31.5 31493 2.6 TBP PKNOX1 TBL1XR1 FEZF1 RAD21 RFX5 GATA2 ZNF366 CBX5 ZSCAN5C KCNJ2 KCNJ2-AS1 LOC105371881 LOC105371882
GH17G070176 0.9 dbSUPER 6.9 -7.8 -7842 2.3 ELF3 RB1 ARID4B SIN3A ZNF2 RAD21 ZNF121 GLIS2 ELK1 SCRT2 KCNJ2-AS1 GC17M070172 CALM2P1
GH17G070178 0.9 dbSUPER 6.9 -7.5 -7455 4.1 ELF3 RB1 ARID4B SIN3A ZNF2 RAD21 ZNF121 GLIS2 ELK1 SCRT2 KCNJ2-AS1 GC17M070172 CALM2P1
GH17G070177 0.9 dbSUPER 6.9 -7.9 -7895 2.7 ELF3 RB1 ARID4B SIN3A ZNF2 RAD21 ZNF121 GLIS2 ELK1 SCRT2 KCNJ2-AS1 GC17M070172 CALM2P1
GH17G070173 0.7 dbSUPER 7 -4.4 -4424 1.6 ZNF792 JUN NFYC CEBPB ZIC2 ZNF644 EP300 JUND MAFF ZBTB33 KCNJ2-AS1 GC17M070172 CALM2P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNJ2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KCNJ2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000097737 -498 3801 ZNF133 SIN3A ZNF121 GLIS2 ZNF143 REST CBX8 SMARCA4 PRDM4 SP7

Genomic Location for KCNJ2-AS1 Gene

Chromosome:
17
Start:
70,166,961 bp from pter
End:
70,169,402 bp from pter
Size:
2,442 bases
Orientation:
Minus strand

Genomic View for KCNJ2-AS1 Gene

Genes around KCNJ2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNJ2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNJ2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNJ2-AS1 Gene

Proteins for KCNJ2-AS1 Gene

Post-translational modifications for KCNJ2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNJ2-AS1 Gene

Domains & Families for KCNJ2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNJ2-AS1 Gene

Function for KCNJ2-AS1 Gene

genes like me logo Genes that share phenotypes with KCNJ2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNJ2-AS1 Gene

Localization for KCNJ2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCNJ2-AS1 Gene

Pathways & Interactions for KCNJ2-AS1 Gene

SuperPathways for KCNJ2-AS1 Gene

No Data Available

Interacting Proteins for KCNJ2-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNJ2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNJ2-AS1 Gene

Transcripts for KCNJ2-AS1 Gene

mRNA/cDNA for KCNJ2-AS1 Gene

(2) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KCNJ2-AS1 Gene

KCNJ2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KCNJ2-AS1 Gene

No ASD Table

Relevant External Links for KCNJ2-AS1 Gene

GeneLoc Exon Structure for
KCNJ2-AS1
ECgene alternative splicing isoforms for
KCNJ2-AS1

Expression for KCNJ2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNJ2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNJ2-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.1) and Brain - Spinal cord (cervical c-1) (x4.6).

SOURCE GeneReport for Unigene cluster for KCNJ2-AS1 Gene:

Hs.225661
genes like me logo Genes that share expression patterns with KCNJ2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNJ2-AS1 Gene

Orthologs for KCNJ2-AS1 Gene

Evolution for KCNJ2-AS1 Gene

ENSEMBL:
Gene Tree for KCNJ2-AS1 (if available)
TreeFam:
Gene Tree for KCNJ2-AS1 (if available)

No data available for Orthologs for KCNJ2-AS1 Gene

Paralogs for KCNJ2-AS1 Gene

No data available for Paralogs for KCNJ2-AS1 Gene

Variants for KCNJ2-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNJ2-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs566186294 Likely benign 70,169,604(+) TGGTT(C/T)GCTTT upstream-variant-2KB, utr-variant-5-prime
rs370696463 Uncertain significance 70,169,569(+) CTTCC(A/C)GGCGC upstream-variant-2KB, utr-variant-5-prime
rs765064661 Uncertain significance 70,169,690(+) TCCTG(C/T)GCCAG upstream-variant-2KB, utr-variant-5-prime
rs886053321 Uncertain significance 70,169,660(+) ACCCC(C/T)CACTT upstream-variant-2KB, utr-variant-5-prime
rs1001683280 -- 70,169,028(+) GGGCC(A/G)AGGGG nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KCNJ2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv2131 CNV deletion 18451855
nsv483015 CNV loss 15286789
nsv498875 CNV loss 21111241
nsv833528 CNV loss 17160897

Relevant External Links for KCNJ2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNJ2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNJ2-AS1 Gene

Disorders for KCNJ2-AS1 Gene

Relevant External Links for KCNJ2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCNJ2-AS1

No disorders were found for KCNJ2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNJ2-AS1 Gene

Publications for KCNJ2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for KCNJ2-AS1 Gene

Sources for KCNJ2-AS1 Gene

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