Aliases for KCNJ2-AS1 Gene
Subcategory (RNA class) for KCNJ2-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for KCNJ2-AS1 Gene
External Ids for KCNJ2-AS1 Gene
- HGNC: 43720
- Entrez Gene: 400617
- Ensembl: ENSG00000267365
Previous GeneCards Identifiers for KCNJ2-AS1 Gene
- GC17M068164
Summaries for KCNJ2-AS1 Gene
GeneCards Summary for KCNJ2-AS1 Gene
KCNJ2-AS1 (KCNJ2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNJ2-AS1 Gene
Genomics for KCNJ2-AS1 Gene
Regulatory Elements for KCNJ2-AS1 Gene
Enhancers for KCNJ2-AS1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH17G070136 | 1.5 | FANTOM5 Ensembl ENCODE | 4.7 | +31.5 | 31493 | 2.6 | TBP PKNOX1 TBL1XR1 FEZF1 RAD21 RFX5 GATA2 ZNF366 CBX5 ZSCAN5C | KCNJ2 KCNJ2-AS1 LOC105371881 LOC105371882 |
| GH17G070176 | 0.9 | dbSUPER | 6.9 | -7.8 | -7842 | 2.3 | ELF3 RB1 ARID4B SIN3A ZNF2 RAD21 ZNF121 GLIS2 ELK1 SCRT2 | KCNJ2-AS1 GC17M070172 CALM2P1 |
| GH17G070178 | 0.9 | dbSUPER | 6.9 | -7.5 | -7455 | 4.1 | ELF3 RB1 ARID4B SIN3A ZNF2 RAD21 ZNF121 GLIS2 ELK1 SCRT2 | KCNJ2-AS1 GC17M070172 CALM2P1 |
| GH17G070177 | 0.9 | dbSUPER | 6.9 | -7.9 | -7895 | 2.7 | ELF3 RB1 ARID4B SIN3A ZNF2 RAD21 ZNF121 GLIS2 ELK1 SCRT2 | KCNJ2-AS1 GC17M070172 CALM2P1 |
| GH17G070173 | 0.7 | dbSUPER | 7 | -4.4 | -4424 | 1.6 | ZNF792 JUN NFYC CEBPB ZIC2 ZNF644 EP300 JUND MAFF ZBTB33 | KCNJ2-AS1 GC17M070172 CALM2P1 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around KCNJ2-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for KCNJ2-AS1 Gene
- Chromosome:
- 17
- Start:
- 70,166,961 bp from pter
- End:
- 70,169,402 bp from pter
- Size:
- 2,442 bases
- Orientation:
- Minus strand
Genomic View for KCNJ2-AS1 Gene
Genes around KCNJ2-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q24.3 by Ensembl
- 17q24.3 by Entrez Gene
- 17q24.3 by HGNC
KCNJ2-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for KCNJ2-AS1 Gene
Proteins for KCNJ2-AS1 Gene
Post-translational modifications for KCNJ2-AS1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for KCNJ2-AS1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for KCNJ2-AS1
- Origene Custom Protein Services for KCNJ2-AS1
- Search GeneTex for Proteins for KCNJ2-AS1
Assay Products
No data available for DME Specific Peptides for KCNJ2-AS1 Gene
Domains & Families for KCNJ2-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNJ2-AS1 Gene
Function for KCNJ2-AS1 Gene
Phenotypes for KCNJ2-AS1 Gene
- GenomeRNAi human phenotypes for KCNJ2-AS1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for KCNJ2-AS1
CRISPR Products
- Browse CRISPR knockouts for KCNJ2-AS1
miRNA Products
- Search ViGene Biosciences for KCNJ2-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for KCNJ2-AS1
Cell Line Products
- Search ViGene Biosciences for KCNJ2-AS1
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNJ2-AS1 Gene
Localization for KCNJ2-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCNJ2-AS1 Gene
Transcripts for KCNJ2-AS1 Gene
mRNA/cDNA for KCNJ2-AS1 Gene
- (2) Additional mRNA sequences :
- (9) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for KCNJ2-AS1 Gene
CRISPR Products
- Browse CRISPR knockouts for KCNJ2-AS1
miRNA Products
- Search ViGene Biosciences for KCNJ2-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for KCNJ2-AS1
Flow Cytometry Products
Expression for KCNJ2-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for KCNJ2-AS1 Gene
This gene is overexpressed in Muscle - Skeletal (x5.1) and Brain - Spinal cord (cervical c-1) (x4.6).
SOURCE GeneReport for Unigene cluster for KCNJ2-AS1 Gene:
Hs.225661Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNJ2-AS1 Gene
Orthologs for KCNJ2-AS1 Gene
No data available for Orthologs for KCNJ2-AS1 Gene
Paralogs for KCNJ2-AS1 Gene
No data available for Paralogs for KCNJ2-AS1 Gene
Variants for KCNJ2-AS1 Gene
| SNP ID | Clin | Chr 17 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs566186294 | Likely benign | 70,169,604(+) | TGGTT(C/T)GCTTT | upstream-variant-2KB, utr-variant-5-prime | |
| rs370696463 | Uncertain significance | 70,169,569(+) | CTTCC(A/C)GGCGC | upstream-variant-2KB, utr-variant-5-prime | |
| rs765064661 | Uncertain significance | 70,169,690(+) | TCCTG(C/T)GCCAG | upstream-variant-2KB, utr-variant-5-prime | |
| rs886053321 | Uncertain significance | 70,169,660(+) | ACCCC(C/T)CACTT | upstream-variant-2KB, utr-variant-5-prime | |
| rs1001683280 | -- | 70,169,028(+) | GGGCC(A/G)AGGGG | nc-transcript-variant, upstream-variant-2KB |
Relevant External Links for KCNJ2-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- KCNJ2-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNJ2-AS1 Gene
Disorders for KCNJ2-AS1 Gene
Relevant External Links for KCNJ2-AS1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- KCNJ2-AS1
No disorders were found for KCNJ2-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNJ2-AS1 Gene
Publications for KCNJ2-AS1 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
Products for KCNJ2-AS1 Gene
- Browse R&D Systems for Antibodies
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- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
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- Browse cDNA Clones
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for KCNJ2-AS1
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- CloneReady with Over 120,000 Genes
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- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
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- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for KCNJ2-AS1
- VectorBuilder custom plasmid, inducible vectors for KCNJ2-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for KCNJ2-AS1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for KCNJ2-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer