Aliases for KCNJ13 Gene
Aliases for KCNJ13 Gene
- Potassium Voltage-Gated Channel Subfamily J Member 13 2 3 5
- Potassium Inwardly-Rectifying Channel, Subfamily J, Member 13 2 3
- Inward Rectifier K(+) Channel Kir7.1 3 4
- Potassium Channel, Inwardly Rectifying Subfamily J, Member 13 3
- Potassium Channel, Inwardly Rectifying Subfamily J Member 13 4
- Inward Rectifier Potassium Channel 13 3
External Ids for KCNJ13 Gene
- HGNC: 6259
- Entrez Gene: 3769
- Ensembl: ENSG00000115474
- OMIM: 603208
- UniProtKB: O60928
Previous GeneCards Identifiers for KCNJ13 Gene
- GC02M231687
- GC02M232360
- GC02M233595
- GC02M233833
- GC02M233829
- GC02M233458
- GC02M233339
- GC02M233630
- GC02M225479
Summaries for KCNJ13 Gene
-
This gene encodes a member of the inwardly rectifying potassium channel family of proteins. Members of this family form ion channel pores that allow potassium ions to pass into a cell. The encoded protein belongs to a subfamily of low signal channel conductance proteins that have a low dependence on potassium concentration. Mutations in this gene are associated with snowflake vitreoretinal degeneration. Alternate splicing results in multiple transcript variants.[provided by RefSeq, Feb 2010]
GeneCards Summary for KCNJ13 Gene
KCNJ13 (Potassium Voltage-Gated Channel Subfamily J Member 13) is a Protein Coding gene. Diseases associated with KCNJ13 include Snowflake Vitreoretinal Degeneration and Leber Congenital Amaurosis 16. Among its related pathways are Collagen chain trimerization and Dopamine-DARPP32 Feedback onto cAMP Pathway. GO annotations related to this gene include inward rectifier potassium channel activity.
UniProtKB/Swiss-Prot for KCNJ13 Gene
-
Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. KCNJ13 has a very low single channel conductance, low sensitivity to block by external barium and cesium, and no dependence of its inward rectification properties on the internal blocking particle magnesium.
-
The inward-rectifier potassium channel family (also known as 2-TM channels) include the strong inward-rectifier channels (Kir2.x), the G-protein-activated inward-rectifier channels (Kir3.x) and the ATP-sensitive channels (Kir6.x), which combine with sulphonylurea receptors.
No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNJ13 Gene
Genomics for KCNJ13 Gene
Regulatory Elements for KCNJ13 Gene
- Transcription factor binding sites by QIAGEN in the KCNJ13 gene promoter:
Regulatory Element Products
Genomic Location for KCNJ13 Gene
- Chromosome:
- 2
- Start:
- 232,765,802 bp from pter
- End:
- 232,776,568 bp from pter
- Size:
- 10,767 bases
- Orientation:
- Minus strand
Genomic View for KCNJ13 Gene
- Cytogenetic band:
-
- 2q37.1 by Ensembl
- 2q37.1 by Entrez Gene
- 2q37.1 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for KCNJ13 Gene
Proteins for KCNJ13 Gene
-
Protein details for KCNJ13 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- O60928-KCJ13_HUMAN
- Recommended name:
- Inward rectifier potassium channel 13
- Protein Accession:
- O60928
- A0PGH1
- O76023
- Q53SA1
- Q8N3Y4
Protein attributes for KCNJ13 Gene
- Size:
- 360 amino acids
- Molecular mass:
- 40530 Da
- Quaternary structure:
- No Data Available
Protein Expression for KCNJ13 Gene
Post-translational modifications for KCNJ13 Gene
- Phosphorylation at Ser-201 by PKC strongly inhibits ionic currents, while phosphorylation at Ser-287 by PKA increases them.
- Modification sites at PhosphoSitePlus
- Modification sites at neXtProt
Other Protein References for KCNJ13 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
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- antibodies-online Antibodies for KCNJ13: See all 30
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-
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Protein Products
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Assay Products
No data available for DME Specific Peptides for KCNJ13 Gene
Domains & Families for KCNJ13 Gene
Gene Families for KCNJ13 Gene
- HGNC:
- IUPHAR :
Protein Domains for KCNJ13 Gene
Suggested Antigen Peptide Sequences for KCNJ13 Gene
Graphical View of Domain Structure for InterPro Entry
O60928UniProtKB/Swiss-Prot:
KCJ13_HUMAN :- Belongs to the inward rectifier-type potassium channel (TC 1.A.2.1) family. KCNJ13 subfamily.
- Family:
-
- Belongs to the inward rectifier-type potassium channel (TC 1.A.2.1) family. KCNJ13 subfamily.
Function for KCNJ13 Gene
Molecular function for KCNJ13 Gene
- GENATLAS Biochemistry:
- potassium non voltage-gated channel,wealkly inwardly rectifying,subfamily J,member 13,novel subunit KIR7.1,predominantly expressed in thyroid follicular cells,choroid plexus,small intestine and moderately in the kidney,stomach,spinal cord and brain,located in the basolateral membrane of follicular cells,in the apical membrane of epithelia,putatively involved in the functional coupling between the channel and Na+K+ ATPase
- UniProtKB/Swiss-Prot Function:
- Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. KCNJ13 has a very low single channel conductance, low sensitivity to block by external barium and cesium, and no dependence of its inward rectification properties on the internal blocking particle magnesium.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005242 | inward rectifier potassium channel activity | NAS | 9738472 |
| GO:0005244 | voltage-gated ion channel activity | IEA | -- |
Phenotypes for KCNJ13 Gene
- MGI mutant phenotypes for KCNJ13:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for KCNJ13:
Animal Models for KCNJ13 Gene
- MGI Knock Outs for KCNJ13:
-
- Kcnj13 tm1(KOMP)Vlcg
Animal Model Products
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miRNA for KCNJ13 Gene
- miRTarBase miRNAs that target KCNJ13
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Inhibitory RNA Products
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Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for KCNJ13 Gene
Localization for KCNJ13 Gene
Subcellular locations from UniProtKB/Swiss-Prot for KCNJ13 Gene
- Membrane; Multi-pass membrane protein.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005887 | integral component of plasma membrane | IBA | -- |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for KCNJ13 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Collagen chain trimerization | ||
| 2 | Dopamine-DARPP32 Feedback onto cAMP Pathway | ||
Pathways by source for KCNJ13 Gene
1 KEGG pathway for KCNJ13 Gene
1 Qiagen pathway for KCNJ13 Gene
Interacting Proteins for KCNJ13 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006810 | transport | IEA | -- |
| GO:0006811 | ion transport | IEA | -- |
| GO:0006813 | potassium ion transport | IEA,NAS | 9738472 |
| GO:0010107 | potassium ion import | IBA | -- |
| GO:0034765 | regulation of ion transmembrane transport | IEA | -- |
Drugs & Compounds for KCNJ13 Gene
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| 4-Aminopyridine | Approved | Pharma | Pore Blocker | potassium channel-blocking agent, Non-selective KV channel blocker | 69 | |
| Glyburide | Approved | Pharma | Channel blocker | Kir6 (KATP) channel blocker | 114 | |
| Nicorandil | Approved | Pharma | Activator | Potassium channel activator, Kir6 (KATP) channel opener and NO donor | 17 | |
| Ba<sup>2+</sup> | Pharma | Pore Blocker | 0 | |||
| Cs<sup>+</sup> | Pharma | Antagonist, Pore Blocker | 0 |
(5) Tocris Compounds for KCNJ13 Gene
| Compound | Action | Cas Number |
|---|---|---|
| Glibenclamide | Kir6 (KATP) channel blocker | 10238-21-8 |
| Levcromakalim | Kir6 (KATP) channel opener; active enantiomer of cromakalim (Cat. No. 1377) | 94535-50-9 |
| Nicorandil | Kir6 (KATP) channel opener and NO donor | 65141-46-0 |
| Tertiapin-Q | Selective blocker of inward-rectifier K+ channels | 252198-49-5 |
| Y-26763 | Kir6 (KATP) channel opener | 127408-31-5 |
Transcripts for KCNJ13 Gene
mRNA/cDNA for KCNJ13 Gene
- (3) REFSEQ mRNAs :
- (7) Additional mRNA sequences :
- (42) Selected AceView cDNA sequences:
- (5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for KCNJ13 Gene
CRISPR Products
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Inhibitory RNA Products
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Flow Cytometry Products
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3a | · | 3b | · | 3c | · | 3d |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||
| SP2: | - | ||||||||||||||||||
| SP3: | - | - | |||||||||||||||||
| SP4: |
Expression for KCNJ13 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Inner Cell Mass (Early Embryonic Tissues)
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for KCNJ13 Gene
NURSA nuclear receptor signaling pathways regulating expression of KCNJ13 Gene:
KCNJ13SOURCE GeneReport for Unigene cluster for KCNJ13 Gene:
Hs.467338mRNA Expression by UniProt/SwissProt for KCNJ13 Gene:
O60928-KCJ13_HUMANEvidence on tissue expression from TISSUES for KCNJ13 Gene
- Nervous system(4.5)
- Eye(4.4)
- Intestine(4.2)
Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNJ13 Gene
- ectoderm
- endoderm
- mesoderm
- cardiovascular
- digestive
- immune
- integumentary
- nervous
- skeletal muscle
- skeleton
- brain
- cerebellum
- cranial nerve
- eye
- head
- olfactory bulb
- skull
- liver
- blood
- blood vessel
- peripheral nerve
- peripheral nervous system
- red blood cell
- skin
- spinal cord
Primer Products
-
OriGene qPCR primer pairs for KCNJ13
-
OriGene qPCR primer pairs and template standards for KCNJ13
No data available for mRNA differential expression in normal tissues for KCNJ13 Gene
Orthologs for KCNJ13 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | KCNJ13 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | KCNJ13 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | KCNJ13 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Kcnj13 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Kcnj13 34 16 35 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | KCNJ13 35 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | KCNJ13 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | KCNJ13 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | KCNJ13 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | kcnj13 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | kcnj13 34 35 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | Irk3 35 |
|
OneToOne | |
| worm (Caenorhabditis elegans) |
Secernentea | irk-3 35 |
|
OneToOne |
- Species where no ortholog for KCNJ13 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for KCNJ13 Gene
(16) SIMAP similar genes for KCNJ13 Gene using alignment to 3 proteins:
No data available for Paralogs for KCNJ13 Gene
Variants for KCNJ13 Gene
| SNP ID | Clin | Chr 02 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs121918542 | Pathogenic, Snowflake vitreoretinal degeneration (SVD) [MIM:193230] | 232,768,790(-) | TTGCC(C/T)GGCCA | intron-variant, reference, missense | |
| rs143607153 | Pathogenic, Leber congenital amaurosis 16 (LCA16) [MIM:614186] | 232,768,552(+) | ACGTT(A/G/T)GTGGA | intron-variant, reference, missense, utr-variant-3-prime | |
| VAR_066488 | Leber congenital amaurosis 16 (LCA16) [MIM:614186] | ||||
| rs387906858 | Pathogenic | 232,768,778(+) | AGCTC(A/G)ATTTT | intron-variant, reference, missense, stop-gained | |
| rs786205550 | Pathogenic | 232,771,004(+) | AACCA(A/G)TTGTG | intron-variant, reference, missense |
Relevant External Links for KCNJ13 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KCNJ13 Gene
Disorders for KCNJ13 Gene
(15) MalaCards diseases for KCNJ13 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, and GeneCards
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| snowflake vitreoretinal degeneration |
|
|
| leber congenital amaurosis 16 |
|
|
| kcnj13-related leber congenital amaurosis |
|
|
| leber congenital amaurosis |
|
|
| vitreoretinal degeneration |
|
|
UniProtKB/Swiss-Prot
KCJ13_HUMAN- Leber congenital amaurosis 16 (LCA16) [MIM:614186]: A severe dystrophy of the retina, typically becoming evident in the first years of life. Visual function is usually poor and often accompanied by nystagmus, sluggish or near-absent pupillary responses, photophobia, high hyperopia and keratoconus. {ECO:0000269 PubMed:21763485}. Note=The disease is caused by mutations affecting the gene represented in this entry.
- Snowflake vitreoretinal degeneration (SVD) [MIM:193230]: Developmental and progressive hereditary eye disorder that affects multiple tissues within the eye. Diagnostic features of SVD include fibrillar degeneration of the vitreous humor, early-onset cataract, minute crystalline deposits in the neurosensory retina, and retinal detachment. {ECO:0000269 PubMed:18179896}. Note=The disease is caused by mutations affecting the gene represented in this entry.
Relevant External Links for KCNJ13
No data available for Genatlas for KCNJ13 Gene
Publications for KCNJ13 Gene
- Partial gene structure and assignment to chromosome 2q37 of the human inwardly rectifying K+ channel (Kir7.1) gene (KCNJ13). (PMID: 9878260) Derst C. … Grzeschik K.-H. (Genomics 1998) 2 3 4 22 64
- Expression of Kir7.1 and a novel Kir7.1 splice variant in native human retinal pigment epithelium. (PMID: 18035352) Yang D. … Hughes B.A. (Exp. Eye Res. 2008) 3 4 22 64
- Mutations in KCNJ13 cause autosomal-dominant snowflake vitreoretinal degeneration. (PMID: 18179896) Hejtmancik J.F. … Edwards A.O. (Am. J. Hum. Genet. 2008) 3 4 22 64
- A novel inward rectifier K+ channel with unique pore properties. (PMID: 9620703) Krapivinsky G. … Clapham D.E. (Neuron 1998) 2 3 4 64
- Recessive mutations in KCNJ13, encoding an inwardly rectifying potassium channel subunit, cause leber congenital amaurosis. (PMID: 21763485) Sergouniotis P.I. … Webster A.R. (Am. J. Hum. Genet. 2011) 3 4 64
Products for KCNJ13 Gene
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- Mammalian expression: PiggyBac
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for KCNJ13 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
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- (106) CYP
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- (113) Taconic Biosciences
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- (140) FANTOM5
- (141) ENCODE
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- (143) Horizon
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- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
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- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer



