Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

KCNJ12 Gene

protein-coding   GIFtS: 62
GCID: GC17P021339

potassium inwardly-rectifying channel, subfamily J, member...

(Previous names: potassium inwardly-rectifying channel, subfamily J, inhibitor...)
(Previous symbol: KCNJN1)
 Explore 8 diseases affiliated with
KCNJ12 via our new
 Human Malady Compendium 
Biological research products
for KCNJ12
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Potassium Inwardly-Rectifying Channel, Subfamily J, Member 121 2     Inward Rectifier K(+) Channel Kir2.2v2 3
KCNJN11 2 3 5     Potassium Channel, Inwardly Rectifying Subfamily J Member 122 3
IRK21 2 3     IRK-22 3
Kir2.21 2     ATP-Sensitive Inward Rectifier Potassium Channel 122
Kir2.2v1 2     HIRK1
HIRK11     Hkir2.2x1
Potassium Inwardly-Rectifying Channel, Subfamily J, Inhibitor 11 2     Inward Rectifier K(+) Channel Kir2.62
Inward Rectifier K(+) Channel Kir2.22 3     Kcnj12x1

External Ids:    HGNC: 62581   Entrez Gene: 37682   Ensembl: ENSG000001841857   OMIM: 6023235   UniProtKB: Q145003   

Export aliases for KCNJ12 gene to outside databases

Previous GC identifers: GC17P021500 GC17P022929 GC17P021184 GC17P021441 GC17P021220 GC17P021259 GC17P020482


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for KCNJ12:
This gene encodes an inwardly rectifying K+ channel which may be blocked by divalent cations. This protein is thought
to be one of multiple inwardly rectifying channels which contribute to the cardiac inward rectifier current (IK1). The
gene is located within the Smith-Magenis syndrome region on chromosome 17. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: IRK12_HUMAN, Q14500
Function: Probably participates in establishing action potential waveform and excitability of neuronal and muscle
tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into
the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium;
as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward
rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular
barium and cesium

summary for KCNJ12:
The inward-rectifier potassium channel family (also known as 2-TM channels) include the strong
inward-rectifier channels (KIR2.x), the G-protein-activated inward-rectifier channels (KIR3.x) and the
ATP-sensitive channels (KIR6.x, which combine with sulphonylurea receptors (SUR)). Structurally, the
pore-forming subunit of KIR channels is the alpha-subunit. It contains a single pore domain between two
membrane spanning regions. Four alpha-subunits combine to form a tetramer, with the pore domain of each
subunit contributing to the structure of the central pore. Heteromeric channels can also be formed within
subfamilies, e.g. KIR3.2 with KIR3.3.

Gene Wiki entry for KCNJ12


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NC_018928.1  NT_010718.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the KCNJ12 gene promoter:
         AhR   AML1a   Pax-6   HNF-4alpha1   Arnt   N-Myc   FOXO1a   ZID   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidKCNJ12 promoter sequence
   Search SABiosciences Chromatin IP Primers for KCNJ12

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat KCNJ12


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p11.2   Ensembl cytogenetic band:  17p11.2   HGNC cytogenetic band: 17p11.1

KCNJ12 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
KCNJ12 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P021339:  view genomic region     (about GC identifiers)

Start:
21,279,509 bp from pter      End:
21,323,179 bp from pter
Size:
43,671 bases      Orientation:
plus strand

1 alternative location:
Chr17+,PATCHES 21,280,389-21,323,869     

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: IRK12_HUMAN, Q14500 (See protein sequence)
Recommended Name: ATP-sensitive inward rectifier potassium channel 12  
Size: 433 amino acids; 49001 Da
Subunit: Association, via its PDZ-recognition domain, with LIN7A, LIN7B, LIN7C, DLG1, CASK and APBA1 plays a key role
in its localization and trafficking (By similarity)
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: O43401 Q15756 Q8NG63

Explore the universe of human proteins at neXtProt for KCNJ12: NX_Q14500

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q14500

  • KCNJ12 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_066292.2  
    ENSEMBL proteins: 
     ENSP00000463778   ENSP00000328150  
    Reactome Protein details: Q14500
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: KCNJ12
    OriGene Custom Protein Services for KCNJ12 
    GenScript Custom Purified and Recombinant Proteins Services for KCNJ12
    Novus Biologicals KCNJ12 Protein
    Novus Biologicals KCNJ12 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for KCNJ12

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016021integral to membrane IEA--
    GO:0030315T-tubule ----
    GO:0030425dendrite ----
    GO:0043025neuronal cell body ----


    KCNJ12 for ontologies           About GeneDecksing



    KCNJ12 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for KCNJ12 
    GenScript Custom Superior Antibodies Services for KCNJ12
    Novus Biologicals KCNJ12 Antibodies
    Search for Antibodies for KCNJ12 at Abcam  
    Uscn Antibodies for KCNJ12
    Search ThermoFisher Antibodies for KCNJ12

    Assay Products for KCNJ12: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for KCNJ12
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for KCNJ12


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    KCNJ12 for domains           About GeneDecksing

    5 InterPro domains/families:
     IPR014756 Ig_E-set
     IPR003272 K_chnl_inward-rec_Kir2.2
     IPR013518 K_chnl_inward-rec_Kir_cyto
     IPR016449 K_chnl_inward-rec_Kir
     IPR013673 K_chnl_inward-rec_Kir_N

    Graphical View of Domain Structure for InterPro Entry Q14500

    ProtoNet protein and cluster: Q14500

    3 Blocks protein families:
    IPB001838 Inward rectifier K+ channel superfamily signature
    IPB003272 Kir2.2 inward rectifier K+ channel signature
    IPB013673 Inward rectifier potassium channel N-terminal


    UniProtKB/Swiss-Prot: IRK12_HUMAN, Q14500
    Similarity: Belongs to the inward rectifier-type potassium channel (TC 1.A.2.1) family. KCNJ12 subfamily


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: IRK12_HUMAN, Q14500
    Function: Probably participates in establishing action potential waveform and excitability of neuronal and muscle
    tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into
    the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium;
    as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward
    rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular
    barium and cesium

         Genatlas biochemistry entry for KCNJ12:
    potassium non voltage-gated channel,inwardly rectifying,subfamily J,alpha subunit KIR2.2,unlikely to be involved in the
    Smith-Magenis syndrome

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: KCNJ12
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat KCNJ12
    8/54 QIAGEN miScript miRNA Assays for microRNAs that regulate KCNJ12 (see all 54):
    hsa-miR-29a hsa-miR-30d hsa-miR-519a hsa-miR-371-5p hsa-miR-1276 hsa-miR-124 hsa-miR-30a hsa-miR-629*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for KCNJ12 (see all 7)
    OriGene shRNA RFP: KCNJ12
    OriGene siRNA: KCNJ12
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat KCNJ12

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for KCNJ12

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for KCNJ12 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for KCNJ12
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: KCNJ12 (NM_021012)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for KCNJ12
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KCNJ12 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for KCNJ12
    Search LifeMap BioReagents cell lines for KCNJ12

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KCNJ12

    Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005242inward rectifier potassium channel activity IEA--
    GO:0005515protein binding ----
    GO:0008200ion channel inhibitor activity TAS8647284
    GO:0015459potassium channel regulator activity TAS8647284
    GO:0030165PDZ domain binding ----


    KCNJ12 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for KCNJ12:
     Decreased influenza A H1N1 (A/  Decreased influenza A/WSN/33 r 

    Animal Models:
         Mouse knock-out Kcnj12tm1Swz for KCNJ12
         8 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Kcnj12):
     adipose tissue  behavior/neurological  cardiovascular system  growth/size  hematopoietic system 
     homeostasis/metabolism  immune system  other 

    KCNJ12 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/8 super-pathways (see all 8About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Inwardly rectifying K+ channels
    Inwardly rectifying K+ channels1.00
    G protein gated Potassium channels0.81
    Activation of G protein gated Potassium channels0.81
    Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits0.81
    2Activation of GABAB receptors
    Activation of GABAB receptors1.00
    GABA receptor activation0.72
    GABA B receptor activation1.00
    3Transmission across Chemical Synapses
    Transmission across Chemical Synapses1.00
    Neuronal System0.67
    Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell0.72
    4Potassium Channels
    Potassium Channels1.00
    Potassium transporters: outward current0.42
    5Classical Kir channels
    Classical Kir channels1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    2 EMD Millipore Pathways for KCNJ12
        Potassium transporters- inward current
    Potassium transporters- outward current

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for KCNJ12
        Dopamine-DARPP32 Feedback onto cAMP Pathway

    5/12        Reactome Pathways for KCNJ12 (see all 12)
        Classical Kir channels
    Transmission across Chemical Synapses
    G protein gated Potassium channels
    Neuronal System
    Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell


    1         Kegg Pathway  (Kegg details for KCNJ12):
        Cholinergic synapse


    KCNJ12 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for KCNJ12

    STRING Interaction Network Preview (showing 5 interactants - click image to see 20)

    5/20 Interacting proteins for KCNJ12 (Q145003 ENSP000003281504) via UniProtKB, MINT, STRING, and/or I2D (see all 20)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DLG1Q129593, ENSP000003457314I2D: score=5 STRING: ENSP00000345731
    CASKO149363, ENSP000003674084I2D: score=4 STRING: ENSP00000367408
    LIN7AO149103, ENSP000002612034I2D: score=4 STRING: ENSP00000261203
    DLG2Q157003, ENSP000003652724I2D: score=3 STRING: ENSP00000365272
    DLG3Q927963, ENSP000003634804I2D: score=3 STRING: ENSP00000363480
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006813potassium ion transport TAS8647284
    GO:0006936muscle contraction TAS7859381
    GO:0007268synaptic transmission TAS--
    GO:0008015blood circulation NAS7859381
    GO:0008016regulation of heart contraction TAS7859381


    KCNJ12 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    KCNJ12 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Compounds for KCNJ12 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    Tertiapin-QSelective blocker of inward-rectifier K+ channels[252198-49-5]

    1 HMDB Compound for KCNJ12    About this table
    CompoundSynonyms CAS #PubMed Ids
    MagnesiumMagnesium (see all 2)7439-95-4--

    1 DrugBank Compound for KCNJ12    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    DofetilideDofetilida [INN-Spanish] (see all 2)115256-11-6targetinhibitor8700146

    1 Novoseek chemical compound relationship for KCNJ12 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    potassium 55.2 5 12417321 (2), 9533018 (1), 15276477 (1)

    Search CenterWatch for drugs/clinical trials and news about KCNJ12 / IRK12 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for KCNJ12 gene: 
    NM_021012.4  

    Unigene Cluster for KCNJ12:

    Potassium inwardly-rectifying channel, subfamily J, member 12
    Hs.200629  [show with all ESTs]
    Unigene Representative Sequence: NM_021012
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000583088(uc002gyv.1 uc021tss.1) ENST00000331718

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: KCNJ12
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat KCNJ12
    8/54 QIAGEN miScript miRNA Assays for microRNAs that regulate KCNJ12 (see all 54):
    hsa-miR-29a hsa-miR-30d hsa-miR-519a hsa-miR-371-5p hsa-miR-1276 hsa-miR-124 hsa-miR-30a hsa-miR-629*
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for KCNJ12 (see all 7)
    OriGene shRNA RFP: KCNJ12
    OriGene siRNA: KCNJ12
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat KCNJ12
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for KCNJ12 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for KCNJ12
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: KCNJ12 (NM_021012)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for KCNJ12
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KCNJ12 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for KCNJ12
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat KCNJ12
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat KCNJ12
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat KCNJ12

    Additional cDNA sequence: 

    AB182123.1 AF005214.1 AK024229.1 BC027982.1 FJ434338.2 L36069.1 

    2 DOTS entries:

    DT.303212  DT.100750085 

    20 AceView cDNA sequences:

    AW299543 CD673578 AB182123 BX279845 BE550570 NM_021012 BM692647 AW299888 
    BC027982 AF005214 BE552277 BV189339 AI916525 BE783053 L36069 F29406 
    BX387181 AW297073 BX345071 BG332575 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    KCNJ12 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TTATTTTCAA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See KCNJ12 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for KCNJ12

    SOURCE GeneReport for Unigene cluster: Hs.200629
        SABiosciences Expression via Pathway-Focused PCR Arrays including KCNJ12: 
              Neuronal Ion Channels in human mouse rat
              Cardiotoxicity in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for KCNJ12
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat KCNJ12
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat KCNJ12
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat KCNJ12
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KCNJ12

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for KCNJ12 gene from 5/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves KCNJ121 potassium inwardly-rectifying channel, subfamily J, more 76.21(n)
    87.09(a)
      427662  XM_425235.2  XP_425235.2 
    lizard
    (Anolis carolinensis)
    Reptilia KCNJ126
    --
    81(a)
    1 ↔ 1
    GL343385.1(938933-940252)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC5691461 ATP-sensitive inward rectifier potassium channel 12-like 74.42(n)
    79.53(a)
      569146  XM_692512.2  XP_697604.2 
    fruit fly
    (Drosophila melanogaster)
    Insecta Ir3 inward rectifier potassium channel 52(a)
    (best of 3)
      94E4   --
    worm
    (Caenorhabditis elegans)
    Secernentea irk-23 potassium channel 49(a)
    (best of 2)
      X(739153-745460)   --


    ENSEMBL Gene Tree for KCNJ12 (if available)
    TreeFam Gene Tree for KCNJ12 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for KCNJ12 gene
    KCNJ42  KCNJ92  KCNJ162  KCNJ82  KCNJ12  KCNJ152  KCNJ52  KCNJ62  
    KCNJ22  KCNJ102  KCNJ142  KCNJ32  KCNJ112  
    16 SIMAP similar genes for KCNJ12 using alignment to 1 protein entry:     IRK12_HUMAN:
    KCNJ18    kcnj12x    KCNJ2    KCNJ4    KCNJ5    KCNJ14
    KCNJ11    KCNJ6    KCNJ9    KCNJ3    KCNJ8    KCNJ15
    KCNJ1    KCNJ16    KCNJ10    KCNJ13

    KCNJ12 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for KCNJ12
    PGOHUM00000237325


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1433 NCBI SNPs in KCNJ12 are shown (see all 1433    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs733081721,2
    C,--21277752(+) CTGTCG/AGAATC 1 -- us2k11Minor allele frequency- A:0.50WA 2
    rs1460827591,2
    --21277772(+) GAGGAG/TCCCTG 1 -- us2k10--------
    rs1835187121,2
    --21277992(+) TCACTC/TGGAGG 1 -- us2k10--------
    rs99002891,2
    C,F,--21278078(+) CACAGT/CGTGCC 1 -- us2k1 tfbs38Minor allele frequency- C:0.21NA WA EA 368
    rs791416091,2
    F,--21278098(+) AGGGTG/AGGGGC 1 -- us2k11Minor allele frequency- A:0.06WA 118
    rs1864011851,2
    --21278239(+) TCCTTC/TATCTG 1 -- us2k10--------
    rs1908166311,2
    --21278313(+) TGGGTA/CCATAG 1 -- us2k10--------
    rs1393197921,2
    --21278320(+) ATAGCA/CCAGAG 1 -- us2k10--------
    rs1440880641,2
    --21278385(+) AAGCAC/TTTTAG 1 -- us2k10--------
    rs781216371,2
    --21278426(+) GCCCCA/CTGAGT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for KCNJ12 (21279509 - 21323179 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 8 variations for KCNJ12
         8 CNVs: 5857 43944 102428 61563 7149 53641 4027 8837

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing KCNJ12
    DNA2.0 Custom Variant and Variant Library Synthesis for KCNJ12

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    KCNJ12 for disorders           About GeneDecksing

    OMIM gene information: 602323    OMIM disorders: --

    8 diseases for KCNJ12:    About MalaCards
    smith-magenis syndrome    lens subluxation    hyperinsulinemic hypoglycemia    poliomyelitis
    hyperinsulinism    hypoglycemia    cholesterol    neuronitis

    4 diseases from the University of Copenhagen DISEASES database for KCNJ12:
    Hypokalemic periodic paralysis     Lens subluxation     Hyperinsulinemic hypoglycemia     Bartter disease

    Export disorders for KCNJ12 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for KCNJ12 gene, integrated from 9 sources (see all 37):
    (articles sorted by number of sources associating them with KCNJ12)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of human Kir2.2 (KCNJ12) gene encoding functional inward rectifier potassium channel in both mammalian cells and Xenopus oocytes. (PubMed id 12417321)1, 2, 3, 9 Kaibara M....Taniyama K. (2002)
    2. Cloning and functional expression of an inwardly rectifying K+ channel from human atrium. (PubMed id 7859381)1, 2, 3 Wible B.A.... Brown A.M. (1995)
    3. International Union of Pharmacology. LIV. Nomenclatur e and molecular relationships of inwardly rectifying potassium channels. (PubMed id 16382105)1, 3 Kubo Y....Vandenberg C.A. (2005)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. An alternate promoter directs expression of a truncated, muscle- specific isoform of the human ankyrin 1 gene. (PubMed id 9430667)1, 2 Gallagher P.G. and Forget B.G. (1998)
    6. Kir2.2v: a possible negative regulator of the inwardly rectifying K+ channel Kir2.2. (PubMed id 8647284)1, 2 Namba N.... Seino S. (1996)
    7. Functional expression of Kir2.x in human aortic endothelial cells: the dominant role of Kir2.2. (PubMed id 15958527)1, 9 Fang Y....Levitan I. (2005)
    8. The inwardly rectifying potassium channel subunit Kir2.2v (KCNJN1) maps to 17p11.2-->p11.1. (PubMed id 9533018)1, 9 Namba N....Seino Y. (1997)
    9. Regulation of cardiac inwardly rectifying potassium current IK1 and Kir2.x channels by endothelin-1. (PubMed id 16258766)1, 9 Kiesecker C....Karle C.A. (2006)
    10. Plasticity of KIR channels in human smooth muscle cells from internal thoracic artery. (PubMed id 12598232)1, 9 Karkanis T....Sims S.M. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 3768 HGNC: 6258 AceView: KCNJ12 Ensembl:ENSG00000184185 euGenes: HUgn3768
    ECgene: KCNJ12 Kegg: 3768 H-InvDB: KCNJ12

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for KCNJ12 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for KCNJ12 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for KCNJ12 gene:
    Search GeneIP for patents involving KCNJ12

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for KCNJ12  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for KCNJ12   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for KCNJ12  
     OriGene Protein Over-expression Lysate for KCNJ12   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for KCNJ12   OriGene 3'-UTR Clone for KCNJ12  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for KCNJ12   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for KCNJ12  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for KCNJ12   OriGene Custom Protein Services for KCNJ12  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat KCNJ12
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing KCNJ12
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat KCNJ12
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat KCNJ12
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat KCNJ12
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat KCNJ12
     GenScript Custom Purified and Recombinant Proteins Services for KCNJ12 GenScript cDNA clones with any tag delivered in your preferred vector for KCNJ12
     GenScript Custom Assay Services for KCNJ12 GenScript Custom Superior Antibodies Services for KCNJ12
     GenScript Custom overexpressing Cell Line Services for KCNJ12 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in KCNJ12 promoter
     Search Chromatin IP Primers for KCNJ12
     RT2 qPCR Primer Assay in human, mouse, rat KCNJ12
     GNC Network for KCNJ12
     SABiosciences PCR Arrays including human, mouse, rat KCNJ12
     Tocris compounds for KCNJ12
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     KCNJ12 antibodies
     KCNJ12 proteins
     KCNJ12 lysates
     Search for Antibodies for KCNJ12 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for KCNJ12
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     KCNJ12 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for KCNJ12
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for KCNJ12
     Browse SwitchGear 3'UTR luciferase reporter plasmids for KCNJ12
     SwitchGear Promoter luciferase reporter plasmids for KCNJ12
     Search ThermoFisher Antibodies for KCNJ12
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat KCNJ12
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      KCNJ12 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4