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Aliases & Descriptions for KCNJ10
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BIRK-10 2 | | KCNJ13-PEN 2 | | KIR1.2 2 | | KIR4.1 2 | | Kir1.2 1 | | Kir4.1 1 | | OTTHUMP00000025748 2 | | SESAME 2, 5 |
| | | Descriptions |
|---|
| ATP-dependent inwardly rectifying potassium channel Kir4.1 3 | | ATP-sensitive inward rectifier potassium channel 10 2 | | Inward rectifier K(+) channel Kir1.2 3 | Potassium channel, inwardly rectifying subfamily J member 10 3 | glial ATP-dependent inwardly rectifying potassium channel KIR4.1 2 | | inward rectifier K+ channel KIR1.2 2 | | inwardly-rectifying potassium channel Kir1.2 2 | potassium inwardly-rectifying channel, subfamily J, member 10 2 |
|
| | Search outside databases for aliases for KCNJ10 genePrevious GC identifers: GC01M157802 GC01M155740 GC01M156785 GC01M157224 GC01M156821 |
Summaries for KCNJ10(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for KCNJ10: This gene encodes a member of the inward rectifier-type potassium channel family, characterized by having a greater tendency to allow potassium to flow into, rather than out of, a cell. The encoded protein may form a heterodimer with another potassium channel protein and may be responsible for the potassium buffering action of glial cells in the brain. Mutations in this gene have been associated with seizure susceptibility of common idiopathic generalized epilepsy syndromes. [provided by RefSeq] UniProtKB/Swiss-Prot: IRK10_HUMAN, P78508Function: May be responsible for potassium buffering action of glial cells in the brain. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular barium and cesium (By similarity)Gene Wiki entry for KCNJ10 |
Genomic Location for KCNJ10
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the KCNJ10 gene 
Entrez Gene cytogenetic band: 1q22-q23 Ensembl cytogenetic band: 1q23.2 HGNC cytogenetic band: 1q23.2KCNJ10 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M158273:
(about GC identifiers)
Start:
|
158,274,657 bp from pter |
End:
|
158,306,585 bp from pter |
Size:
|
31,929 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_004487.18
| Proteins for KCNJ10
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IRK10_HUMAN, P78508 (See
protein sequence)Recommended Name: ATP-sensitive inward rectifier potassium channel 10 Size: 379 amino acids; 42508 Da
Subunit: Seems to form heterodimer with Kir5.1/KCNJ16. Interacts with INADL (By similarity)
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: Q5VUT9 Q8N4I7 Q92808Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002232.2
ENSEMBL proteins: ENSP00000357068
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for KCNJ10: Assays for KCNJ10: | Protein
Domains/ Families for KCNJ10(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P78508
ProtoNet protein and cluster: P78508 2 Blocks protein families: IPB001838 Inward rectifier K+ channel superfamily signature IPB003269 Kir1.2 inward rectifier K+ channel signature
UniProtKB/Swiss-Prot: IRK10_HUMAN, P78508Similarity: Belongs to the inward rectifier-type potassium channel family | Gene Function for KCNJ10
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002241
Applied Biosystems Silencer® siRNAs for KCNJ10
Sigma-Aldrich siRNA and siRNA Panels for KCNJ10  Sigma-Aldrich shRNA Panels and shRNA for KCNJ10  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002241                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002241                                  untagged cDNA clone in CMV expression vector: NM_002241 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002241
UniProtKB/Swiss-Prot: IRK10_HUMAN, P78508Function: May be responsible for potassium buffering action of glial cells in the brain. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular barium and cesium (By similarity)Genatlas biochemistry entry for KCNJ10:potassium non voltage-gated channel,inwardly rectifying,subfamily J,member 10, Kir4.18 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Kcnj10):
5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): About this table | Pathways & Interactions for KCNJ10
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for KCNJ10 
5/65 Interacting proteins for KCNJ10 (ENSP000003570683) via UniProtKB, MINT, and/or STRING (see all 65
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for KCNJ10(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for KCNJ10 |
Compounds for KCNJ10 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| ZM 226600 | KATP channel opener | [147695-92-9] | | Minoxidil | K+ channel (KATP) opener | [38304-91-5] | | PNU 37883 hydrochloride | Vascular KATP channel blocker | [57568-80-6] | | Diazoxide | Blocks desensitization of AMPA receptors | [364-98-7] | | Y-27152 | Prodrug of KATP channel opener Y-26763; orally active in vivo | [127408-30-4] | About this table
|
Transcripts for KCNJ10(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002241
Sigma-Aldrich siRNA and siRNA Panels for KCNJ10  Sigma-Aldrich shRNA Panels and shRNA for KCNJ10  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002241 REFSEQ mRNAs for KCNJ10 gene: NM_002241.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002241               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002241                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002241                                  untagged cDNA clone in CMV expression vector: NM_002241  Additional cDNA sequence: AK312383.1 BC034036.1 BC037840.2 BC131627.1 U52155.1 U73193.1 4 DOTS entries: DT.95136836 DT.87046294 DT.87046903 DT.92418513 24/75 AceView cDNA sequences (see all 75
):AI419228 AI361037 BX106837 NM_002241 AW071744 AI767375 AI631564 AW566005 AI422210 U73193 BM693480 AI422185 BQ028058 BQ636994 BP350144 AI948845 BX095323 AL583547 BF346344 AA873849 AL533380 BQ723125 AI634976 BC037840
highest scoring ESTs for KCNJ10:U52155 AA348034 AI830426 BC034036 BG699206 BQ636994 BX095323 AA017020 AA021348 AA348033 Unigene Cluster for KCNJ10: Potassium inwardly-rectifying channel, subfamily J, member 10 Hs.408960 [show with all ESTs]Unigene Representative Sequence: NM_002241
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000368089
|
Expression for KCNJ10
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| KCNJ10 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for KCNJ10
1 / 2 / 3 8 probe-sets matching KCNJ10 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AAGGCTTTTG
SOURCE GeneReport for Unigene cluster: Hs.408960
Expression variation in blood from EXPOLDB for KCNJ10 |
Orthologs for KCNJ10
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for KCNJ10 gene from 5/7 species (see all 7
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
KCNJ101 |
-- |
potassium inwardly-rectifying channel, subfamily J, more |
89.71(n) 98.42(a) |
488635 XM_545752.2 XP_545752.2 |
chimpanzee (Pan troglodytes) |
KCNJ101 |
-- |
potassium inwardly-rectifying channel, subfamily J, more |
99.65(n) 100(a) |
457431 XM_513920.2 XP_513920.2 |
cow (Bos taurus) |
KCNJ101 |
-- |
potassium inwardly-rectifying channel, subfamily J, more |
92.79(n) 98.68(a) |
533343 XM_612721.3 XP_612721.3 |
rat (Rattus norvegicus) |
Kcnj101 |
-- |
potassium inwardly-rectifying channel, subfamily J, more |
88.13(n) 95.25(a) |
29718 NM_031602.1 NP_113790.1 |
mouse (Mus musculus) |
Kcnj101, 5 |
1 (93.50 cM)5
|
potassium inwardly-rectifying channel, subfamily J, more1, 5 |
89.62(n)1 99.21(a)1 |
165131 NM_001039484.11 NP_001034573.11 AB0398795 AF3226315 (see all 12) |
About this table Species with no ortholog for KCNJ10
ENSEMBL Gene Tree for KCNJ10 | Paralogs for KCNJ10(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for KCNJ10 gene
- KCNJ152 KCNJ132
|
SNPs/Variants for KCNJ10(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for KCNJ10 (up to first 250kb)
|
Disorders & Mutations for KCNJ10
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602208 disorders: 612780 1 PharmGKB disease relationship for KCNJ10 gene
| Disease |
PharmGKB Relations |
PubMed IDs for articles supporting these relationships |
| Epilepsy | CO  GN   | 15120748 | About this table
Genetic Association Database: KCNJ10 Human Genome Epidemiology Navigator: KCNJ10 (5 documents)
|
Medical News for KCNJ10(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for KCNJ10 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/25 PubMed articles for KCNJ10 gene (see all 25
):- Association between variation in the human KCNJ10 potassium ion channel gene and seizure susceptibility. (PubMed id 15120748)3, 6, 7 Buono R.J....Ferraro T.N. (2004)
- Cloning and characterization of two K+ inward rectifier (Kir) 1.1 potassium channel homologs from human kidney (Kir1.2 and Kir1.3). (PubMed id 8995301)2, 3, 4 Shuck M.E....Bienkowski M.J. (1997)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)3, 4 Gregory S.G.... Bentley D.R. (2006)
- International Union of Pharmacology. LIV. Nomenclature and molecular relationships of inwardly rectifying potassium channels. (PubMed id 16382105)2, 3 Kubo Y....Vandenberg C.A. (2005)
- Supportive evidence for an allelic association of the human KCNJ10 potassium channel gene with idiopathic generalized epilepsy. (PubMed id 15725393)3, 6 Lenzen K.P....Sander T. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Molecular analysis of KCNJ10 on 1q as a candidate gene for Type 2 diabetes in Pima Indians. (PubMed id 12401729)3, 6 Farook V.S....Prochazka M. (2002)
- Co-expression of human Kir3 subunits can yield channels with different functional properties. (PubMed id 10659995)3, 4 Schoots O....Van Tol H.H.M. (1999)
- Assignment of the glial inwardly rectifying potassium channel KAB-2/Kir4.1 (Kcnj10) gene to the distal region of mouse chromosome 1. (PubMed id 9367690)2, 3 Tada Y....Kurachi Y. (1997)
- CIPP, a novel multivalent PDZ domain protein, selectively interacts with Kir4.0 family members, NMDA receptor subunits, neurexins, and neuroligins. (PubMed id 9647694)1, 3 Kurschner C.... Surmeier D.J. (1998)
|
Search for KCNJ10
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing KCNJ10
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing KCNJ10
(According to HUGE)
About This Section
| -- |
Specialized Databases showing KCNJ10(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for KCNJ10(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for KCNJ10:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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