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Aliases for KCNIP4-IT1 Gene

Subcategory (RNA class) for KCNIP4-IT1 Gene

lncRNA

Quality Score for this RNA gene is

5

Aliases for KCNIP4-IT1 Gene

  • KCNIP4 Intronic Transcript 1 2 3 5
  • KCNIP4 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Non Coding Transcript UM9(5) 2
  • Non-Coding Transcript UM9(5) 3
  • Non-Protein Coding RNA 99 2
  • NCRNA00099 3
  • UM9(5) 3
  • UM9-5 3

External Ids for KCNIP4-IT1 Gene

ORGUL Members for KCNIP4-IT1 Gene

Previous HGNC Symbols for KCNIP4-IT1 Gene

  • NCRNA00099

Summaries for KCNIP4-IT1 Gene

GeneCards Summary for KCNIP4-IT1 Gene

KCNIP4-IT1 (KCNIP4 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for KCNIP4-IT1 Gene

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

Additional gene information for KCNIP4-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for KCNIP4-IT1 Gene

Genomics for KCNIP4-IT1 Gene

GeneHancer (GH) Regulatory Elements for KCNIP4-IT1 Gene

Promoters and enhancers for KCNIP4-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I021801 Enhancer 0.4 ENCODE 0.2 +50.8 50806 2.3 JUND JUN FOSL2 PIR33436 KCNIP4-IT1 KCNIP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KCNIP4-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNIP4-IT1 Gene

Genomic Locations for KCNIP4-IT1 Gene
chr4:21,843,341-21,853,188
(GRCh38/hg38)
Size:
9,848 bases
Orientation:
Minus strand
chr4:21,844,964-21,854,811
(GRCh37/hg19)

Genomic View for KCNIP4-IT1 Gene

Genes around KCNIP4-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNIP4-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNIP4-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNIP4-IT1 Gene

ORGUL Member Location for KCNIP4-IT1 Gene

ORGUL Member Location for KCNIP4-IT1 gene

Proteins for KCNIP4-IT1 Gene

Post-translational modifications for KCNIP4-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNIP4-IT1 Gene

Domains & Families for KCNIP4-IT1 Gene

Gene Families for KCNIP4-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KCNIP4-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNIP4-IT1 Gene

Function for KCNIP4-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNIP4-IT1 Gene

Localization for KCNIP4-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNIP4-IT1 Gene

Pathways & Interactions for KCNIP4-IT1 Gene

SuperPathways for KCNIP4-IT1 Gene

No Data Available

Interacting Proteins for KCNIP4-IT1 Gene

Gene Ontology (GO) - Biological Process for KCNIP4-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNIP4-IT1 Gene

Drugs & Compounds for KCNIP4-IT1 Gene

No Compound Related Data Available

Transcripts for KCNIP4-IT1 Gene

mRNA/cDNA for KCNIP4-IT1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KCNIP4-IT1 Gene

KCNIP4 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNIP4-IT1 Gene

No ASD Table

Relevant External Links for KCNIP4-IT1 Gene

GeneLoc Exon Structure for
KCNIP4-IT1
ECgene alternative splicing isoforms for
KCNIP4-IT1

Expression for KCNIP4-IT1 Gene

SOURCE GeneReport for Unigene cluster for KCNIP4-IT1 Gene:

Hs.354058
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNIP4-IT1 Gene

Orthologs for KCNIP4-IT1 Gene

Evolution for KCNIP4-IT1 Gene

ENSEMBL:
Gene Tree for KCNIP4-IT1 (if available)
TreeFam:
Gene Tree for KCNIP4-IT1 (if available)

No data available for Orthologs for KCNIP4-IT1 Gene

Paralogs for KCNIP4-IT1 Gene

No data available for Paralogs for KCNIP4-IT1 Gene

Variants for KCNIP4-IT1 Gene

Sequence variations from dbSNP and Humsavar for KCNIP4-IT1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000797843 -- 21,847,203(-) A/G non_coding_transcript_variant
rs1000851572 -- 21,846,825(-) C/T non_coding_transcript_variant
rs1000993159 -- 21,851,098(-) A/G non_coding_transcript_variant
rs1001006059 -- 21,854,208(-) AAA/AA upstream_transcript_variant
rs1001269986 -- 21,852,164(-) C/A non_coding_transcript_variant

Additional Variant Information for KCNIP4-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNIP4-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNIP4-IT1 Gene

Disorders for KCNIP4-IT1 Gene

Additional Disease Information for KCNIP4-IT1

No disorders were found for KCNIP4-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNIP4-IT1 Gene

Publications for KCNIP4-IT1 Gene

  1. UM 9(5)h and UM 9(5)p, human and porcine noncoding transcripts with preferential expression in the cerebellum. (PMID: 12515386) Michel U … Isbrandt D (RNA (New York, N.Y.) 2002) 1 2 3 58
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for KCNIP4-IT1 Gene

Sources for KCNIP4-IT1 Gene

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