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Aliases for KCNIP2-AS1 Gene

Subcategory (RNA class) for KCNIP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNIP2-AS1 Gene

  • KCNIP2 Antisense RNA 1 2 3 5

External Ids for KCNIP2-AS1 Gene

Previous GeneCards Identifiers for KCNIP2-AS1 Gene

  • GC10P103579

Summaries for KCNIP2-AS1 Gene

GeneCards Summary for KCNIP2-AS1 Gene

KCNIP2-AS1 (KCNIP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNIP2-AS1 Gene

Genomics for KCNIP2-AS1 Gene

Regulatory Elements for KCNIP2-AS1 Gene

Enhancers for KCNIP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F102000 1.2 Ensembl ENCODE 10.1 +183.3 183311 4.4 HDGF PKNOX1 ZFP64 ZNF493 FEZF1 ZNF207 JUNB TSHZ1 TBX21 ZNF518A HPS6 ARL3 KCNIP2 C10orf76 KCNIP2-AS1 MGEA5 GBF1 SFXN2 LDB1 NFKB2
GH10F102009 1.1 Ensembl ENCODE 10.5 +190.9 190871 0.7 ELF3 TBL1XR1 WRNIP1 ARID4B ZSCAN9 ZNF2 RAD21 RFX5 SLC30A9 SCRT2 KCNIP2 C10orf76 HPS6 KCNIP2-AS1 MGEA5 FGF8 POLL DPCD ENSG00000222430
GH10F101485 2.5 VISTA Ensembl ENCODE 4.5 -333.0 -333015 1.6 PKNOX1 MLX ARID4B FEZF1 ZNF2 YY1 ZNF121 ZNF143 ZNF263 REST RNU2-43P DPCD TLX1 POLL KCNIP2-AS1 MFSD13A GC10P101487 GC10M101454
GH10F101828 1.4 FANTOM5 ENCODE 6.5 +11.9 11916 4.4 HDGF PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 ZNF302 ZNF416 ZNF143 ZNF207 LDB1 PPRC1 GBF1 ENSG00000272572 ARL3 HPS6 SUFU MGEA5 SFXN2 KCNIP2
GH10F102111 1.5 FANTOM5 ENCODE 4.2 +298.7 298666 11.6 HDGF PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 CBX5 ZNF207 LDB1 HPS6 PPRC1 NOLC1 BORCS7 NFKB2 C10orf95 KCNIP2-AS1 KCNIP2 PSD
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNIP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KCNIP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000360654 -1968 5001 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9

Genomic Location for KCNIP2-AS1 Gene

Chromosome:
10
Start:
101,819,068 bp from pter
End:
101,828,889 bp from pter
Size:
9,822 bases
Orientation:
Plus strand

Genomic View for KCNIP2-AS1 Gene

Genes around KCNIP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNIP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNIP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNIP2-AS1 Gene

Proteins for KCNIP2-AS1 Gene

Post-translational modifications for KCNIP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNIP2-AS1 Gene

Domains & Families for KCNIP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNIP2-AS1 Gene

Function for KCNIP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNIP2-AS1 Gene

Localization for KCNIP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCNIP2-AS1 Gene

Pathways & Interactions for KCNIP2-AS1 Gene

SuperPathways for KCNIP2-AS1 Gene

No Data Available

Interacting Proteins for KCNIP2-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNIP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNIP2-AS1 Gene

Transcripts for KCNIP2-AS1 Gene

mRNA/cDNA for KCNIP2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNIP2-AS1 Gene

No ASD Table

Relevant External Links for KCNIP2-AS1 Gene

GeneLoc Exon Structure for
KCNIP2-AS1
ECgene alternative splicing isoforms for
KCNIP2-AS1

Expression for KCNIP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KCNIP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNIP2-AS1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x7.0), Heart - Left Ventricle (x6.1), Brain - Nucleus accumbens (basal ganglia) (x6.1), and Brain - Putamen (basal ganglia) (x4.4).
genes like me logo Genes that share expression patterns with KCNIP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KCNIP2-AS1 Gene

Orthologs for KCNIP2-AS1 Gene

Evolution for KCNIP2-AS1 Gene

ENSEMBL:
Gene Tree for KCNIP2-AS1 (if available)
TreeFam:
Gene Tree for KCNIP2-AS1 (if available)

No data available for Orthologs for KCNIP2-AS1 Gene

Paralogs for KCNIP2-AS1 Gene

No data available for Paralogs for KCNIP2-AS1 Gene

Variants for KCNIP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNIP2-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10883689 -- 101,826,599(+) AGGAA(A/G)GAAGG intron-variant, utr-variant-3-prime
rs111376070 -- 101,821,222(+) CTCAA(A/G)AAAAA intron-variant
rs111649321 -- 101,828,697(+) CATTC(C/G)TGGAA nc-transcript-variant, reference, missense, splice-acceptor-variant
rs111829901 -- 101,824,468(+) CTGGA(A/G)TGCAG intron-variant
rs11191121 -- 101,820,739(+) TCCAT(C/T)TCAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KCNIP2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv951004 CNV deletion 24416366

Relevant External Links for KCNIP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNIP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNIP2-AS1 Gene

Disorders for KCNIP2-AS1 Gene

Relevant External Links for KCNIP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCNIP2-AS1

No disorders were found for KCNIP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNIP2-AS1 Gene

Publications for KCNIP2-AS1 Gene

No publications were found for KCNIP2-AS1 Gene.

Products for KCNIP2-AS1 Gene

Sources for KCNIP2-AS1 Gene

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