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Aliases for KCNIP2-AS1 Gene

Subcategory (RNA class) for KCNIP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNIP2-AS1 Gene

  • KCNIP2 Antisense RNA 1 2 3 5

External Ids for KCNIP2-AS1 Gene

Previous GeneCards Identifiers for KCNIP2-AS1 Gene

  • GC10P103579

Summaries for KCNIP2-AS1 Gene

GeneCards Summary for KCNIP2-AS1 Gene

KCNIP2-AS1 (KCNIP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNIP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNIP2-AS1 Gene

Genomics for KCNIP2-AS1 Gene

Regulatory Elements for KCNIP2-AS1 Gene

Enhancers for KCNIP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H102000 1.4 Ensembl ENCODE dbSUPER 20.6 +183.3 183311 4 HDGF PKNOX1 TBL1XR1 ZNF493 ZFP64 BMI1 BATF ZNF143 ZNF207 ATF7 HPS6 GBF1 KCNIP2-AS1 LDB1 PPRC1 ARL3 KCNIP2 C10orf76 MGEA5 SFXN2
GH10H101828 1.7 FANTOM5 ENCODE dbSUPER 16.8 +11.9 11916 4 HDGF PKNOX1 ARNT SIN3A ZNF2 ZBTB7B ZNF766 ZNF302 ZNF416 ZNF143 PPRC1 LDB1 GBF1 LZTS2 MRPL43 HPS6 NOLC1 MGEA5 SUFU ENSG00000272572
GH10H102761 1.5 Ensembl ENCODE dbSUPER 13.2 +946.1 946081 6 PKNOX1 ATF1 ARNT SIN3A FEZF1 ZNF2 YY1 TCF12 ZNF766 GATA2 SFXN2 NOLC1 WBP1L AS3MT KCNIP2-AS1 CYP17A1 PFN1P11 PTGES3P4 ARL3 RPEL1
GH10H102710 1.7 FANTOM5 Ensembl ENCODE 10.7 +894.0 893950 5 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF143 ARL3 KCNIP2-AS1 WBP1L MFSD13A SFXN2 AS3MT HPS6 FBXL15 GC10P102705
GH10H102398 1.6 Ensembl ENCODE dbSUPER 10.7 +580.5 580489 1 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF207 KCNIP2-AS1 HPS6 PITX3 NFKB2 FBXL15
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNIP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KCNIP2-AS1 Gene

Chromosome:
10
Start:
101,819,068 bp from pter
End:
101,828,889 bp from pter
Size:
9,822 bases
Orientation:
Plus strand

Genomic View for KCNIP2-AS1 Gene

Genes around KCNIP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNIP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNIP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNIP2-AS1 Gene

Proteins for KCNIP2-AS1 Gene

Post-translational modifications for KCNIP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNIP2-AS1 Gene

Domains & Families for KCNIP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNIP2-AS1 Gene

Function for KCNIP2-AS1 Gene

Phenotypes From GWAS Catalog for KCNIP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNIP2-AS1 Gene

Localization for KCNIP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNIP2-AS1 Gene

Pathways & Interactions for KCNIP2-AS1 Gene

SuperPathways for KCNIP2-AS1 Gene

No Data Available

Interacting Proteins for KCNIP2-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNIP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNIP2-AS1 Gene

Drugs & Compounds for KCNIP2-AS1 Gene

No Compound Related Data Available

Transcripts for KCNIP2-AS1 Gene

mRNA/cDNA for KCNIP2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNIP2-AS1 Gene

No ASD Table

Relevant External Links for KCNIP2-AS1 Gene

GeneLoc Exon Structure for
KCNIP2-AS1
ECgene alternative splicing isoforms for
KCNIP2-AS1

Expression for KCNIP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNIP2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNIP2-AS1 Gene

This gene is overexpressed in Heart - Atrial Appendage (x7.0), Heart - Left Ventricle (x6.1), Brain - Nucleus accumbens (basal ganglia) (x6.1), and Brain - Putamen (basal ganglia) (x4.4).
genes like me logo Genes that share expression patterns with KCNIP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNIP2-AS1 Gene

Orthologs for KCNIP2-AS1 Gene

Evolution for KCNIP2-AS1 Gene

ENSEMBL:
Gene Tree for KCNIP2-AS1 (if available)
TreeFam:
Gene Tree for KCNIP2-AS1 (if available)

No data available for Orthologs for KCNIP2-AS1 Gene

Paralogs for KCNIP2-AS1 Gene

No data available for Paralogs for KCNIP2-AS1 Gene

Variants for KCNIP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNIP2-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000017419 -- 101,827,192(+) CTTCA(A/G)CTCCA intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1000049837 -- 101,826,893(+) CTTGT(C/G)CCCCT intron-variant, utr-variant-3-prime
rs1000059290 -- 101,817,285(+) GGAAA(A/G)AGGGC intron-variant, upstream-variant-2KB
rs1000323637 -- 101,823,026(+) GGATC(A/G)CCTGA intron-variant
rs1000923422 -- 101,821,403(+) AATAG(C/T)TTATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KCNIP2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv951004 CNV deletion 24416366

Relevant External Links for KCNIP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNIP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNIP2-AS1 Gene

Disorders for KCNIP2-AS1 Gene

Relevant External Links for KCNIP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCNIP2-AS1

No disorders were found for KCNIP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNIP2-AS1 Gene

Publications for KCNIP2-AS1 Gene

No publications were found for KCNIP2-AS1 Gene.

Products for KCNIP2-AS1 Gene

Sources for KCNIP2-AS1 Gene

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