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Aliases & Descriptions for KCNIP2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp566L1246 2 KCHIP2 1 , 2 , 3 KChIP2 3 MGC17241 2 OTTHUMP00000020332 2 OTTHUMP00000020333 2 OTTHUMP00000020336 2 OTTHUMP00000020337 2 OTTHUMP00000020339 2 OTTHUMP00000020340 2
Descriptions A-type potassium channel modulatory protein 2 2 , 3 Cardiac voltage-gated potassium channel modulatory subunit 3 Kv channel interacting protein 2 2 Kv channel-interacting protein 2 1 , 2 Potassium channel-interacting protein 2 3 cardiac voltage gated potassium channel modulatory subunit 2 potassium channel interacting protein 2 2
Search outside databases for aliases for KCNIP2 genePrevious GC identifers: GC10M102478 GC10M102819 GC10M103716 GC10M103250
Summaries for KCNIP2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCNIP2 : This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interactingproteins (KCNIPs), which belongs to the recoverin branch of the EF-hand superfamily. Members ofthe KCNIP family are small calcium binding proteins. They all have EF-hand-like domains, anddiffer from each other in the N-terminus. They are integral subunit components of native Kv4channel complexes. They may regulate A-type currents, and hence neuronal excitability, in responseto changes in intracellular calcium. Multiple alternatively spliced transcript variants encodingdistinct isoforms have been identified from this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: KCIP2_HUMAN, Q9NS61 Function : Regulatory subunit of Kv4/D (Shal)-type voltage-gated rapidly inactivating A-typepotassium channels. Probably modulates channels density, inactivation kinetics and rate ofrecovery from inactivation in a calcium-dependent and isoform-specific manner. In vitro, modulatesKCND2/Kv4.2 and KCND3/Kv4.3 currents. Involved in KCND2 and KCND3 trafficking to the cell surface(By similarity)
Gene Wiki entry for KCNIP2
Genomic Location for KCNIP2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCNIP2 gene Entrez Gene cytogenetic band: 10q24 Ensembl cytogenetic band: 10q24.32 HGNC chromosome: 10 KCNIP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10M103575:
(about GC identifiers )
Start:
103,575,721 bp from pter
End:
103,593,667 bp from pter
Size:
17,947 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000010.9 NT_030059.12 Proteins for KCNIP2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCIP2_HUMAN, Q9NS61 (See
protein sequence )Recommended Name: Kv channel-interacting protein 2 Size : 270 amino acids; 30919 Da
Subunit : Component of heteromultimeric potassium channels. The KCND2-KCNIP2 channel complexcontains four KCND2 and four KCNIP2 subunits. Interacts with KCND2. Isoform 1 and isoform 3interact with KCND3 isoform 1. Probably part of a complex consisting of KCNIP1, KCNIP2 isoform 3and KCND2. At least isoform 2 and isoform 3 can self-associate to form homodimers andhomotetramers. Isoform 3 interacts with KCNIP1 in a calcium-dependent manner
Subcellular location : Isoform 1: Cell membrane; Lipid-anchor (By similarity)
Subcellular location : Isoform 2: Cell membrane; Lipid-anchor (By similarity)
Subcellular location : Isoform 6: Cell membrane; Lipid-anchor (By similarity)
Secondary accessions : Q7Z6F1 Q96K86 Q96T41 Q96T42 Q96T43 Q96T44 Q9H0N4 Q9HD10 Q9HD11 Q9NS60 Q9NY10Q9NZI1 Alternative splicing : 9 isoforms : Q9NS61-1 Q9NS61-2 Q9NS61-3 Q9NS61-4 Q9NS61-5 Q9NS61-6 Q9NS61-7 Q9NS61-8 Q9NS61-9
Post-translational modifications:
Palmitoylated. Palmitoylation enhances association with the plasma membrane (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (7 alternative transcripts):
NP_055406.2 NP_775283.1 NP_775284.1 NP_775285.1 NP_775286.1 NP_775287.1 NP_775289.1 ENSEMBL proteins: ENSP00000344169 ENSP00000341624 ENSP00000350733 ENSP00000349055 ENSP00000347877 ENSP00000352940 ENSP00000359063 ENSP00000239118 ENSP00000286993 ENSP00000239117 ENSP00000359076 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: KCNIP2 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for KCNIP2: Assays for KCNIP2:
Protein
Domains/ Families for KCNIP2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9NS61 ProtoNet protein and cluster: Q9NS61
1 Blocks protein family : IPB001125 Recoverin family signature UniProtKB/Swiss-Prot: KCIP2_HUMAN, Q9NS61 Similarity : Belongs to the recoverin familySimilarity : Contains 4 EF-hand domains
Gene Function for KCNIP2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 8 ): NM_173191 Applied Biosystems Silencer ® siRNAs for KCNIP2 Sigma-Aldrich siRNA and siRNA Panels for KCNIP2 Sigma-Aldrich shRNA Panels and shRNA for KCNIP2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 7 ): NM_014591                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 7 ): NM_014591                                  untagged cDNA clones in CMV expression vector (see all 8 ): NM_014591  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_014591 UniProtKB/Swiss-Prot: KCIP2_HUMAN, Q9NS61 Function : Regulatory subunit of Kv4/D (Shal)-type voltage-gated rapidly inactivating A-typepotassium channels. Probably modulates channels density, inactivation kinetics and rate ofrecovery from inactivation in a calcium-dependent and isoform-specific manner. In vitro, modulatesKCND2/Kv4.2 and KCND3/Kv4.3 currents. Involved in KCND2 and KCND3 trafficking to the cell surface(By similarity)
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Kcnip2) :5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
):
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Pathways & Interactions for KCNIP2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for KCNIP2 5/49 Interacting proteins for KCNIP2 (ENSP00000347877 3 Q9NS61 1 ) via UniProtKB, MINT, and/or STRING (see all 49
)About this table 5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
):
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Drugs & Compounds for KCNIP2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Compounds for KCNIP2 available from Tocris Bioscience About this table 1 Novoseek chemical compound relationship for KCNIP2 gene
About this table 1 PharmGKB drug compound relationship for KCNIP2 gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
antiarrhythmics FA  GN  12135940
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Transcripts for KCNIP2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 8 ): NM_173191 Sigma-Aldrich siRNA and siRNA Panels for KCNIP2 Sigma-Aldrich shRNA Panels and shRNA for KCNIP2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_014591 NM_173191 NM_173192 NM_173193 NM_173194 NM_173195 NM_173197
REFSEQ mRNAs for KCNIP2 gene (7 alternative transcripts): NM_014591.4 NM_173191.2 NM_173192.2 NM_173193.2 NM_173194.2 NM_173195.2 NM_173197.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_014591 NM_173191 NM_173192 NM_173193 NM_173194 NM_173195 NM_173197
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 7 ): NM_014591                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 7 ): NM_014591                                  untagged cDNA clones in CMV expression vector (see all 8 ): NM_014591  
Additional cDNA sequence: AF199598.1 AF295076.1 AF295530.1 AF347114.1 AF367018.1 AF367019.1 AF367020.1 AF367021.1 AJ276317.1 AK027347.1 AK055089.1 AK094668.1 AK295324.1 AK301433.1 AK309368.1 AK314536.1 AK315042.1 AL136722.1 AY026328.1 AY302141.1 BC034685.1 CR599605.1 CR610606.1 DQ148480.1 DQ148481.1 DQ148482.1 DQ148483.1 DQ148484.1 DQ862463.1
15 DOTS entries : DT.100024646 DT.95167614 DT.92421414 DT.100024645 DT.97841042 DT.100786537 DT.100682704 DT.97841043 DT.100024644 DT.121246693 DT.97801229 DT.121246726 DT.95083018 DT.100786536 DT.95289238
24/77 AceView cDNA sequences (see all 77
):AI871184 AF199598 NM_014591 AF295076 AK027347 BX105471 AA365784 AF367020 AF367018 NM_173197 BF347736 AF295530 NM_173194 NM_173193 AF347114 CR610606 BC034685 BE048040 AA365263 AW959983 AF367019 CR599605 AF367021 NM_173192
highest scoring ESTs for KCNIP2 :AF199598 AF295076 AF295530 AF347114 AF367018 AF367019 AF367021 AK055089 AL533488 AY026328
Unigene Cluster for KCNIP2: Kv channel interacting protein 2 Hs.97044 [show with all ESTs ] Unigene Representative Sequence: NM_014591 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for KCNIP2 (see all 12
) ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12a · 12b · 12c ^ 13a · 13b SP1 :   -   -       -       -     -                   -             SP2 :   -   -       -   -     -     -   -                 -             SP3 :   -   -       -   -   -   -     -   -                 -             SP4 :                 -     -   -                 -             SP5 :       -   -   -   -   -   -     -   -                 -            
About this scheme ECgene alternative splicing isoforms for KCNIP2 11 Ensembl transcripts including schematic representations : ENST00000343195
ENST00000353068
ENST00000358038
ENST00000356640
ENST00000355657
ENST00000359877
ENST00000370046
ENST00000348850
ENST00000286993
ENST00000239117
ENST00000370059
Expression for KCNIP2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCNIP2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCNIP2 1 / 2 / 3
8 probe-sets matching KCNIP2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CGGCCACCCCSOURCE GeneReport for Unigene cluster: Hs.97044 UniProtKB/Swiss-Prot: KCIP2_HUMAN, Q9NS61 Tissue specificity : Expressed in brain. Colocalizes with KCND2 in excitatory neurons includingcortical and hippocampal CA1 pyramidal cells. Isoform 3 is expressed in heart and in umbilicalvein endothelial cells. Not expressed in fetal heart
Orthologs for KCNIP2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCNIP2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for KCNIP2 ENSEMBL Gene Tree for KCNIP2 Paralogs for KCNIP2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCNIP2 gene EFCAB1 2 KCNIP3 2
SNPs/Variants for KCNIP2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCNIP2 (up to first 250kb)
Disorders & Mutations for KCNIP2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 604661
Medical News for KCNIP2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCNIP2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/55 PubMed articles for KCNIP2 gene (see all 55
): Modulation of A-type potassium channels by a family of calcium sensors. (PubMed id 10676964) 2, 3, 4 An W.F.... Rhodes K.J. (2000) Molecular cloning and expression of the novel splice variants of K(+) channel-interacting protein 2. (PubMed id 11263977) 1, 3, 4 Ohya S....Imaizumi Y. (2001) Modulation of Kv4.3 current by accessory subunits. (PubMed id 12297301) 1, 3, 4 Deschenes I. and Tomaselli G.F. (2002) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Three-dimensional structure of I(to); Kv4.2-KChIP2 ion channels by electron microscopy at 21 Angstrom resolution. (PubMed id 14980201) 3, 4 Kim L.A....Grigorieff N. (2004) Protein-protein interactions of KChIP proteins and Kv4.2. (PubMed id 15358149) 3, 4 Lin Y.-L.... Chang L.S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Ito channels are octomeric complexes with four subunits of each Kv4.2 and K+ channel-interacting protein 2. (PubMed id 14623880) 3, 4 Kim L.A.... Goldstein S.A. (2004) KChIPs and Kv4 alpha subunits as integral components of A-type potassium channels in mammalian brain. (PubMed id 15356203) 3, 4 Rhodes K.J.... Trimmer J.S. (2004) A fundamental role for KChIPs in determining the molecular properties and trafficking of Kv4.2 potassium channels. (PubMed id 12829703) 3, 4 Shibata R.... Trimmer J.S. (2003)
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Genome Databases showing KCNIP2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KCNIP2
(According to HUGE )
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Specialized Databases showing KCNIP2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KCNIP2:
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009