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Aliases & Descriptions for KCNIP1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases KCHIP1 1 , 2 , 3 KChIP1 3 MGC95 2 VABP 2 , 3
Descriptions A-type potassium channel modulatory protein 1 2 , 3 Kv channel interacting protein 1 2 Potassium channel-interacting protein 1 3 Vesicle APC-binding protein 2 , 3 potassium channel interacting protein 1 2
Search outside databases for aliases for KCNIP1 genePrevious GC identifers: GC05P170167 GC05P170634 GC05P169911 GC05P169863
Summaries for KCNIP1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCNIP1 : This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interactingproteins (KCNIPs), which belong to the recoverin branch of the EF-hand superfamily. Members of theKCNIP family are small calcium binding proteins. They all have EF-hand-like domains, and differfrom each other in the N-terminus. They are integral subunit components of native Kv4 channelcomplexes. They may regulate A-type currents, and hence neuronal excitability, in response tochanges in intracellular calcium. Alternative splicing results in multiple transcript variantencoding different isoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: KCIP1_HUMAN, Q9NZI2 Function : Regulatory subunit of Kv4/D (Shal)-type voltage-gated rapidly inactivating A-typepotassium channels. Probably modulates channels density, inactivation kinetics and rate ofrecovery from inactivation in a calcium-dependent and isoform-specific manner. In vitro, modulatesKCND1/Kv4.1 and KCND2/Kv4.2 currents. Seems to be involved in KCND2 trafficking to the cellsurface
Gene Wiki entry for KCNIP1
Genomic Location for KCNIP1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCNIP1 gene Entrez Gene cytogenetic band: 5q35.1 Ensembl cytogenetic band: 5q35.1 HGNC cytogenetic band: 5q35 KCNIP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05P169716:
(about GC identifiers )
Start:
169,713,459 bp from pter
End:
170,096,214 bp from pter
Size:
382,756 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000005.8 NT_023133.12 Proteins for KCNIP1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCIP1_HUMAN, Q9NZI2 (See
protein sequence )Recommended Name: Kv channel-interacting protein 1 Size : 227 amino acids; 26817 Da
Subunit : Component of heteromultimeric potassium channels. Interacts with KCND3 and the N-terminaldomain of KCND2. Probably part of a complex consisting of KCNIP1, KCNIP2 isoform 3 and KCND2. Canself-associate to form homodimers and homotetramers. Interacts with KCNIP2 isoform 3 in acalcium-dependent manner. Interacts with Naja atra venom CTX3
Subcellular location : Cell membrane; Peripheral membrane protein (By similarity)
PDB structures from and Proteopedia : 1S1E (3D)
 2I2R (3D)
 2NZ0 (3D)
 
Secondary accessions : Q5U822Alternative splicing : 3 isoforms : Q9NZI2-1 Q9NZI2-2 Q9NZI2-3
REFSEQ proteins (3 alternative transcripts):
NP_001030009.1 NP_001030010.1 NP_055407.1 ENSEMBL proteins: ENSP00000375071 ENSP00000329686 ENSP00000366577 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: KCNIP1 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005886 plasma membrane
IEA --
About this table Antibodies for KCNIP1: Assays for KCNIP1:
Protein
Domains/ Families for KCNIP1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9NZI2 ProtoNet protein and cluster: Q9NZI2
1 Blocks protein family : IPB001125 Recoverin family signature UniProtKB/Swiss-Prot: KCIP1_HUMAN, Q9NZI2 Similarity : Belongs to the recoverin familySimilarity : Contains 4 EF-hand domains
Gene Function for KCNIP1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
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RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001034837 Applied Biosystems Silencer ® siRNAs for KCNIP1 Sigma-Aldrich siRNA and siRNA Panels for KCNIP1 Sigma-Aldrich shRNA Panels and shRNA for KCNIP1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001034837                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001034837                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001034837  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001034837 UniProtKB/Swiss-Prot: KCIP1_HUMAN, Q9NZI2 Function : Regulatory subunit of Kv4/D (Shal)-type voltage-gated rapidly inactivating A-typepotassium channels. Probably modulates channels density, inactivation kinetics and rate ofrecovery from inactivation in a calcium-dependent and isoform-specific manner. In vitro, modulatesKCND1/Kv4.1 and KCND2/Kv4.2 currents. Seems to be involved in KCND2 trafficking to the cellsurface
5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for KCNIP1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for KCNIP1 1 Interacting protein for KCNIP1 (Q9NZI2 1 ) via UniProtKB, MINT, and/or STRING About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for KCNIP1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for KCNIP1
Compounds for KCNIP1 available from Tocris Bioscience About this table 2 Novoseek chemical compound relationships for KCNIP1 gene
About this table
Transcripts for KCNIP1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001034837 Sigma-Aldrich siRNA and siRNA Panels for KCNIP1 Sigma-Aldrich shRNA Panels and shRNA for KCNIP1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001034837 NM_001034838 NM_014592
REFSEQ mRNAs for KCNIP1 gene (3 alternative transcripts): NM_001034837.1 NM_001034838.1 NM_014592.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001034837 NM_001034838 NM_014592
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001034837                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001034837                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001034837  
Additional cDNA sequence: AK124041.1
7 DOTS entries : DT.40315513 DT.120848015 DT.101960252 DT.120848016 DT.120847999 DT.75143416 DT.97810830
24/33 AceView cDNA sequences (see all 33
):BX420376 CR602352 CA942614 NM_014592 CR602258 BM920920 AF199597 AI333844 CA942598 AL538404 BC050375 AY170821 AL567288 BX451738 BC035032 AI004002 BU790505 BX464072 BX461539 AK074390 CA942856 BE464646 AI422813 BI546102
highest scoring ESTs for KCNIP1 :AI422813 AF199597 AI004002 AI333844 AI498849 AK074390 AL567288 AY170821 BC035032 BC050375
Unigene Clusters for KCNIP1: Kv channel interacting protein 1 Hs.484111 [show with all ESTs ] , Hs.689588 [show with all ESTs ] Unigene Representative Sequences: NM_001034837 , AK124041 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for KCNIP1 ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c SP1 :           -         -                 SP2 :         -   -         -                 SP3 :         -   -                         SP4 :         -                          
About this scheme ECgene alternative splicing isoforms for KCNIP1 3 Ensembl transcripts including schematic representations : ENST00000390656
ENST00000328939
ENST00000377360
Expression for KCNIP1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCNIP1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCNIP1 1 / 2 / 3
3 probe-sets matching KCNIP1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTCTAACCAASOURCE GeneReport for Unigene clusters: Hs.484111 Hs.689588 UniProtKB/Swiss-Prot: KCIP1_HUMAN, Q9NZI2 Tissue specificity : Isoform 1 and isoform 2 are expressed in brain and kidney. Isoform 1 is alsoexpressed in liver, pancreas, skeletal muscle, small intestine and testis. Isoform 2 is alsoexpressed in lung, pancreas, leukocytes, prostate and thymus
Orthologs for KCNIP1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCNIP1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for KCNIP1 ENSEMBL Gene Tree for KCNIP1 Paralogs for KCNIP1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCNIP1 gene KCNIP4 2
SNPs/Variants for KCNIP1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCNIP1 (up to first 250kb)
Disorders & Mutations for KCNIP1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 604660
Medical News for KCNIP1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCNIP1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/26 PubMed articles for KCNIP1 gene (see all 26
): Modulation of A-type potassium channels by a family of calcium sensors. (PubMed id 10676964) 2, 3, 4 An W.F.... Rhodes K.J. (2000) Two N-terminal domains of Kv4 K(+) channels regulate binding to and modulation by KChIP1. (PubMed id 14980207) 1, 3, 4 Scannevin R.H.... Rhodes K.J. (2004) Different effects of the Ca(2+)-binding protein, KChIP1, on two Kv4 subfamily members, Kv4.1 and Kv4.2. (PubMed id 11423117) 1, 3, 4 Nakamura T.Y....Coetzee W.A. (2001) Three-dimensional structure of the KChIP1-Kv4.3 T1 complex reveals a cross-shaped octamer. (PubMed id 17057713) 3, 4 Pioletti M....Minor D.L. (2006) Evidence showing an intermolecular interaction between KChIP proteins and Taiwan cobra cardiotoxins. (PubMed id 15184042) 3, 4 Lin Y.-L.... Chang L.-S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Protein-protein interactions of KChIP proteins and Kv4.2. (PubMed id 15358149) 3, 4 Lin Y.-L.... Chang L.S. (2004) Differential modulation of Kv4 kinetics by KCHIP1 splice variants. (PubMed id 14572458) 3, 4 Van Hoorick D.... Snyders D.J. (2003) A fundamental role for KChIPs in determining the molecular properties and trafficking of Kv4.2 potassium channels. (PubMed id 12829703) 3, 4 Shibata R.... Trimmer J.S. (2003) Structure, alternative splicing, and expression of the human and mouse KCNIP gene family. (PubMed id 16112838) 1, 3 Pruunsild P. and Timmusk T. (2005)
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Genome Databases showing KCNIP1
(According to
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
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Other Databases showing KCNIP1
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Specialized Databases showing KCNIP1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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