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Aliases & Descriptions for KCNH6
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ERG2 2 , 3 HERG2 1 , 2 , 3 Kv11.2 1 , 2 erg2 1
Descriptions Eag-related protein 2 3 Ether-a-go-go-related gene potassium channel 2 3 Ether-a-go-go-related protein 2 3 Voltage-gated potassium channel subunit Kv11.2 3 eag related protein 2 2 eag-related gene member 2 2 ether-a-go-go related gene potassium channel 2 2 potassium voltage-gated channel, subfamily H (eag-related), member 6 2 potassium voltage-gated channel, subfamily H, member 6 2
Search outside databases for aliases for KCNH6 genePrevious GC identifers: GC17P061251 GC17P064027 GC17P061941 GC17P062074
Summaries for KCNH6 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCNH6 : Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ionchannels from both functional and structural standpoints. Their diverse functions includeregulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability,epithelial electrolyte transport, smooth muscle contraction, and cell volume. This gene encodes amember of the potassium channel, voltage-gated, subfamily H. This member is a pore-forming (alpha)subunit. Several alternatively spliced transcript variants have been identified from this gene,but the full-length nature of only two transcript variants has been determined. [provided byRefSeq] UniProtKB/Swiss-Prot: KCNH6_HUMAN, Q9H252 Function : Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits a slowlyactivating, rectifying current (By similarity). Channel properties may be modulated by cAMP andsubunit assembly
Genomic Location for KCNH6
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCNH6 gene Entrez Gene cytogenetic band: 17q23.3 Ensembl cytogenetic band: 17q23.3 HGNC cytogenetic band: 17q23.3 KCNH6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P058954:
(about GC identifiers )
Start:
58,954,427 bp from pter
End:
59,160,897 bp from pter
Size:
206,471 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010783.14 Proteins for KCNH6
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCNH6_HUMAN, Q9H252 (See
protein sequence )Recommended Name: Potassium voltage-gated channel subfamily H member 6 Size : 994 amino acids; 109925 Da
Subunit : The potassium channel is probably composed of a homo- or heterotetrameric complex ofpore-forming alpha subunits that can associate with modulating beta subunits. Heteromultimers withKCNH2/ERG1 and KCNH7/ERG3 (By similarity)
Subcellular location : Membrane; Multi-pass membrane protein
Secondary accessions : Q9BRD7Alternative splicing : 3 isoforms : Q9H252-1 Q9H252-2 Q9H252-3 (Experimental confirmation may be lacking for some isoforms)
REFSEQ proteins (2 alternative transcripts):
NP_110406.1 NP_775115.1 ENSEMBL proteins: ENSP00000376695 ENSP00000309393 ENSP00000318212 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0016020 membrane
IEA -- GO:0016021 integral to membrane
IEA --
About this table Antibodies for KCNH6: Assays for KCNH6:
Protein
Domains/ Families for KCNH6(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9H252 ProtoNet protein and cluster: Q9H252
5/7 Blocks protein families (see all 7
): IPB000014 PAS domain IPB000595 Cyclic nucleotide-binding domain IPB001610 PAC motif IPB003938 EAG/ELK/ERG potassium channel family signature IPB003950 ELK potassium channel family signature UniProtKB/Swiss-Prot: KCNH6_HUMAN, Q9H252 Domain : The segment S4 is probably the voltage-sensor and is characterized by a series ofpositively charged amino acids at every third position Similarity : Belongs to the potassium channel family. H (Eag) subfamilySimilarity : Contains 1 cyclic nucleotide-binding domainSimilarity : Contains 1 PAC (PAS-associated C-terminal) domainSimilarity : Contains 1 PAS (PER-ARNT-SIM) domain
Gene Function for KCNH6
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_030779 Applied Biosystems Silencer ® siRNAs for KCNH6 Sigma-Aldrich siRNA and siRNA Panels for KCNH6 Sigma-Aldrich shRNA Panels and shRNA for KCNH6 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_030779                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_030779                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC006334  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_030779 UniProtKB/Swiss-Prot: KCNH6_HUMAN, Q9H252 Function : Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits a slowlyactivating, rectifying current (By similarity). Channel properties may be modulated by cAMP andsubunit assembly
1 MGI phenotypic allele for Kcnh6 (no phenotypes)3 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005244 voltage-gated ion channel activity
IEA -- GO:0005249 voltage-gated potassium channel activity
IEA -- GO:0030955 potassium ion binding
IEA --
About this table
Pathways & Interactions for KCNH6
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/8 Interacting proteins for KCNH6 (ENSP00000318212 3 ) via UniProtKB, MINT, and/or STRING (see all 8
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0006811 ion transport
IEA -- GO:0006813 potassium ion transport
IEA -- GO:0007165 signal transduction
IEA --
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Drugs & Compounds for KCNH6 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for KCNH6
Compounds for KCNH6 available from Tocris Bioscience About this table 3 Novoseek chemical compound relationships for KCNH6 gene
About this table
Transcripts for KCNH6(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_030779 Sigma-Aldrich siRNA and siRNA Panels for KCNH6 Sigma-Aldrich shRNA Panels and shRNA for KCNH6 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_030779 NM_173092
REFSEQ mRNAs for KCNH6 gene (2 alternative transcripts): NM_030779.2 NM_173092.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_030779 NM_173092
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_030779                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_030779                                  untagged cDNA clones in CMV expression vector (see all 4 ): BC006334  
Additional cDNA sequence: AF311913.1 AK090969.1 AK091877.1 AK296498.1 AK298363.1 BC006334.2
4 DOTS entries : DT.92001686 DT.40246903 DT.91740938 DT.91853909
24/25 AceView cDNA sequences (see all 25
):BU170580 AF311913 NM_173092 NM_030779 BM561167 CD632739 BF685466 CD632735 AX746709 CD632727 BM461490 CD632733 CD632731 CD632729 BG395842 BC006334 AX747233 AK091877 H96171 AA908657 AK090969 BE465143 BE672839 CD632737
highest scoring ESTs for KCNH6 :AA908657 AK091877 AF311913 AI699256 AK090969 BC006334 BE465143 BE672839 BF685466 BG395842
Unigene Cluster for KCNH6: Potassium voltage-gated channel, subfamily H (eag-related), member 6 Hs.591177 [show with all ESTs ] Unigene Representative Sequence: NM_030779 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for KCNH6 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 SP1 :                   -             -         -     SP2 :                   -                         SP3 :                               -             SP4 :                                          
About this scheme ECgene alternative splicing isoforms for KCNH6 3 Ensembl transcripts including schematic representations : ENST00000392968
ENST00000350328
ENST00000314672
Expression for KCNH6
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCNH6 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCNH6 1 / 2 / 3
7 probe-sets matching KCNH6 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCAGGACAGTSOURCE GeneReport for Unigene cluster: Hs.591177 UniProtKB/Swiss-Prot: KCNH6_HUMAN, Q9H252 Tissue specificity : Expressed in prolactin-secreting adenomas
Orthologs for KCNH6
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCNH6 gene from 5/11 species (see all 11
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
KCNH61
--
potassium voltage-gated channel, subfamily H (eag-related), more
89.35(n) 90.37(a)
610684 XM_848226.1 XP_853319.1
cow (Bos taurus)
KCNH61
--
potassium voltage-gated channel, subfamily H (eag-related), more
90.04(n) 91.82(a)
527872 XM_867795.2 XP_872888.2
rat (Rattus norvegicus)
Kcnh61
--
potassium voltage-gated channel, subfamily H (eag-related), more
87.16(n) 90.32(a)
116745 NM_053937.1 NP_446389.1
mouse (Mus musculus)
Kcnh61 , 5
115
potassium voltage-gated channel, subfamily H (eag-related), more 1, 5
87.51(n) 1 90.74(a) 1
192775 1 NM_001037712.1 1 NP_001032801.1 1 AK038513 5 AL596331 5 (see all 7 )
chicken (Gallus gallus)
KCNH61
--
potassium voltage-gated channel, subfamily H (eag-related), more
72.6(n) 70.67(a)
414871 XM_418075.2 XP_418075.2
About this table Species with no ortholog for KCNH6 ENSEMBL Gene Tree for KCNH6 Paralogs for KCNH6 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCNH6 gene KCNH2 2 KCNH7 2
SNPs/Variants for KCNH6 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCNH6 (up to first 250kb)
Disorders & Mutations for KCNH6
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 608168
Medical News for KCNH6 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCNH6 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/20 PubMed articles for KCNH6 gene (see all 20
): HERG K(+) currents in human prolactin-secreting adenoma cells. (PubMed id 12634931) 1, 3, 4 Bauer C.K.... Schwarz J.R. (2003) International Union of Pharmacology. LIII. Nomenclature and molecular relationships of voltage-gated potassium channels. (PubMed id 16382104) 2, 3 Gutman G.A....Wang X. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 3 Strausberg R.L....Marra M.A. (2002) Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id ) 4 Aoki H.... Hino O. (2000) The eag family of K+ channels in Drosophila and mammals. (PubMed id 10414305) 3 Ganetzky B....Titus S.A. (1999) Epigenetic control of differential expression of specific ERG isoforms in acute T-lymphoblastic leukemia. (PubMed id 19108891) 1 Bohne A....Baldus C.D. (2009) Discovery of high-affinity ligands of sigma1 receptor, ERG2, and emopamil binding protein by pharmacophore modeling and virtual screening. (PubMed id 16033255) 1 Laggner C....Moebius F.F. (2005) Two Novel Ergtoxins, Blockers of K(+)-channels, Purified from the Mexican Scorpion Centruroides elegans elegans. (PubMed id 18338253) 1 Restano-Cassulini R....Possani L.D. (2008)
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Genome Databases showing KCNH6
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KCNH6
(According to HUGE )
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Specialized Databases showing KCNH6 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for KCNH6 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KCNH6:
Tocris compounds for KCNH6
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Incremental update: 13 Oct 2009