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Aliases & Descriptions for KCNH5
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EAG2 2 , 3 H-EAG2 1 , 2 Kv10.2 1 , 2 eag2 1 hEAG2 3
Descriptions Ether-a-go-go potassium channel 2 3 Voltage-gated potassium channel subunit Kv10.2 3 ether-a-go-go-related potassium channel 2 2 potassium channel HEAG2 2 potassium voltage-gated channel, subfamily H (eag-related), member 5 2 potassium voltage-gated channel, subfamily H, member 5 2 voltage-gated potassium channel EAG2 2
Search outside databases for aliases for KCNH5 genePrevious GC identifers: GC14M060501 GC14M056967 GC14M061163
Summaries for KCNH5 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCNH5 : Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ionchannels from both functional and structural standpoints. Their diverse functions includeregulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability,epithelial electrolyte transport, smooth muscle contraction, and cell volume. This gene encodes amember of the potassium channel, voltage-gated, subfamily H. This member is a pore-forming (alpha)subunit of a voltage-gated non-inactivating delayed rectifier potassium channel. This gene is notexpressed in differentiating myoblasts. Alternative splicing results in three transcript variantsencoding distinct isoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: KCNH5_HUMAN, Q8NCM2 Function : Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits anon-inactivating outward rectifying current. Channel properties may be modulated by cAMP andsubunit assembly
Genomic Location for KCNH5
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCNH5 gene Entrez Gene cytogenetic band: 14q23.1 Ensembl cytogenetic band: 14q23.2 HGNC cytogenetic band: 14q23.1 KCNH5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M062243:
(about GC identifiers )
Start:
62,243,052 bp from pter
End:
62,638,337 bp from pter
Size:
395,286 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000014.7 NT_026437.11 Proteins for KCNH5
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCNH5_HUMAN, Q8NCM2 (See
protein sequence )Recommended Name: Potassium voltage-gated channel subfamily H member 5 Size : 988 amino acids; 111907 Da
Subunit : The potassium channel is probably composed of a homo- or heterotetrameric complex ofpore-forming alpha subunits that can associate with modulating beta subunits. Heteromultimer withKCNH1/EAG (Probable)
Subcellular location : Membrane; Multi-pass membrane protein
Sequence caution : Sequence=BAC11016.1; Type=Erroneous termination; Positions=436; Note=Translatedas Gly; Alternative splicing : 3 isoforms : Q8NCM2-1 Q8NCM2-2 Q8NCM2-3 (Experimental confirmation may be lacking for some isoforms)
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_647479.2 NP_758963.1 NP_758964.1 ENSEMBL proteins: ENSP00000378419 ENSP00000378415 ENSP00000321427 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0016020 membrane
IEA -- GO:0016021 integral to membrane
IEA --
About this table Antibodies for KCNH5: Assays for KCNH5:
Protein
Domains/ Families for KCNH5(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q8NCM2 ProtoNet protein and cluster: Q8NCM2
5/7 Blocks protein families (see all 7
): IPB000014 PAS domain IPB000595 Cyclic nucleotide-binding domain IPB001610 PAC motif IPB003938 EAG/ELK/ERG potassium channel family signature IPB003949 EAG potassium channel signature UniProtKB/Swiss-Prot: KCNH5_HUMAN, Q8NCM2 Domain : The segment S4 is probably the voltage-sensor and is characterized by a series ofpositively charged amino acids at every third position Similarity : Belongs to the potassium channel family. H (Eag) subfamilySimilarity : Contains 1 cyclic nucleotide-binding domainSimilarity : Contains 1 PAC (PAS-associated C-terminal) domainSimilarity : Contains 1 PAS (PER-ARNT-SIM) domain
Gene Function for KCNH5
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_172375 Applied Biosystems Silencer ® siRNAs for KCNH5 Sigma-Aldrich siRNA and siRNA Panels for KCNH5 Sigma-Aldrich shRNA Panels and shRNA for KCNH5 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_139318                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_139318                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_139318  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_139318 UniProtKB/Swiss-Prot: KCNH5_HUMAN, Q8NCM2 Function : Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits anon-inactivating outward rectifying current. Channel properties may be modulated by cAMP andsubunit assembly
Genatlas biochemistry entry for KCNH5 :potassium voltage-gated channel, subfamily H (eag-related), member 5
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Kcnh5) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0000155 two-component sensor activity
IEA -- GO:0005244 voltage-gated ion channel activity
IEA -- GO:0005249 voltage-gated potassium channel activity
IEA -- GO:0005516 calmodulin binding
IEA -- GO:0030955 potassium ion binding
IEA --
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Pathways & Interactions for KCNH5
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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--4 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0000160 two-component signal transduction system (phosphorelay)
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0006811 ion transport
IEA -- GO:0006813 potassium ion transport
IEA --
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Drugs & Compounds for KCNH5 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Compounds for KCNH5 available from Tocris Bioscience About this table 1 Novoseek chemical compound relationship for KCNH5 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
potassium
36.08
1
11943152 (1)
About this table
Transcripts for KCNH5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_172375 Sigma-Aldrich siRNA and siRNA Panels for KCNH5 Sigma-Aldrich shRNA Panels and shRNA for KCNH5 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_139318 NM_172375 NM_172376
REFSEQ mRNAs for KCNH5 gene (3 alternative transcripts): NM_139318.3 NM_172375.1 NM_172376.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_139318 NM_172375 NM_172376
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_139318                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_139318                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_139318  
Additional cDNA sequence: AF418206.1 AF472412.1 AF493798.1 BC043409.2 BC073979.1
4 DOTS entries : DT.100018940 DT.100018941 DT.97819289 DT.100741448
19 AceView cDNA sequences :AF493798 NM_172375 BC073979 NM_172376 F05455 AF418206 Z38438 NM_139318 AW628656 F01716 AF472412 CD636893 BC043409 F05456 BX281706 U69185 AK074484 CD636891 BQ439615
highest scoring ESTs for KCNH5 :AF418206 AF472412 AF493798 BC043409 BQ439615 BX281706 U69185 AK074484 AW628656 BC073979
Unigene Cluster for KCNH5: Potassium voltage-gated channel, subfamily H (eag-related), member 5 Hs.27043 [show with all ESTs ] Unigene Representative Sequence: BC073979 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for KCNH5 ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b SP1 :     -   -               -               SP2 :                     -         -       SP3 :                     -       -   -       SP4 :     -   -                            
About this scheme ECgene alternative splicing isoforms for KCNH5 3 Ensembl transcripts including schematic representations : ENST00000394968
ENST00000394964
ENST00000322893
Expression for KCNH5
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCNH5 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCNH5 1 / 2 / 3
5 probe-sets matching KCNH5 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCAGGATATTSOURCE GeneReport for Unigene cluster: Hs.27043 UniProtKB/Swiss-Prot: KCNH5_HUMAN, Q8NCM2 Tissue specificity : Detected in brain, skeletal muscle, heart, placenta, lung and liver, and at lowlevels in kidney
Orthologs for KCNH5
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCNH5 gene from 5/11 species (see all 11
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
KCNH51
--
potassium voltage-gated channel, subfamily H (eag-related), more
93.86(n) 99.09(a)
490724 XM_547846.2 XP_547846.2
chimpanzee (Pan troglodytes)
KCNH51
--
potassium voltage-gated channel, subfamily H (eag-related), more
99.59(n) 99.8(a)
467476 XM_522873.2 XP_522873.2
cow (Bos taurus)
KCNH51
--
potassium voltage-gated channel, subfamily H (eag-related), more
93.72(n) 99.09(a)
537813 XM_864922.2 XP_870015.1
rat (Rattus norvegicus)
Kcnh51
--
potassium voltage-gated channel, subfamily H (eag-related), more
91.4(n) 98.28(a)
171146 NM_133610.1 NP_598294.1
mouse (Mus musculus)
Kcnh51 , 5
125
potassium voltage-gated channel, subfamily H (eag-related), more 1, 5
91.33(n) 1 97.98(a) 1
238271 1 NM_172805.2 1 NP_766393.1 1 AF309565 5 AK032438 5 (see all 6 )
About this table Species with no ortholog for KCNH5 ENSEMBL Gene Tree for KCNH5 Paralogs for KCNH5 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCNH5 gene KCNH1 2
SNPs/Variants for KCNH5 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCNH5 (up to first 250kb)
Disorders & Mutations for KCNH5
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605716
Medical News for KCNH5 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCNH5 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/14 PubMed articles for KCNH5 gene (see all 14
): Functional distinction of human EAG1 and EAG2 potassium channels. (PubMed id 11943152) 1, 3, 4 Schoenherr R.... Heinemann S.H. (2002) International Union of Pharmacology. LIII. Nomenclature and molecular relationships of voltage-gated potassium channels. (PubMed id 16382104) 2, 3 Gutman G.A....Wang X. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Molecular identification and characterisation of the human eag2 potassium channel. (PubMed id 12135768) 3, 4 Ju M. and Wray D. (2002) Cloning of a human ether-a-go-go potassium channel expressed in myoblasts at the onset of fusion. (PubMed id 9738473) 2, 3 Occhiodoro T.... Fischer-Lougheed J. (1998) Proteomic analysis of ubiquitinated proteins in normal hepatocyte cell line Chang liver cells. (PubMed id 18655026) 3 Tan F....Peng X. (2008) DNA methylation in tumor and matched normal tissues from non-small cell lung cancer patients. (PubMed id 18349282) 3 Feng Q....Vesselle H. (2008) Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PubMed id 16303743) 3 Otsuki T....Isogai T. (2005) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 3 Strausberg R.L....Marra M.A. (2002)
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Genome Databases showing KCNH5
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KCNH5
(According to HUGE )
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--
Specialized Databases showing KCNH5 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for KCNH5 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KCNH5:
Tocris compounds for KCNH5
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Databases for KCNH5
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Function for KCNH5
Location for KCNH5
Medical News for KCNH5
Orthologs for KCNH5
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Proteins for KCNH5
Publications for KCNH5
SNPs for KCNH5
Search Box for KCNH5
Services for KCNH5
Summaries for KCNH5
Technologies for KCNH5
Transcripts for KCNH5
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009