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Aliases for KCNH3 Gene

Aliases for KCNH3 Gene

  • Potassium Voltage-Gated Channel Subfamily H Member 3 2 3 5
  • Potassium Voltage-Gated Channel, Subfamily H (Eag-Related), Member 3 2 3
  • Voltage-Gated Potassium Channel Subunit Kv12.2 3 4
  • Ether-A-Go-Go-Like Potassium Channel 2 3 4
  • Brain-Specific Eag-Like Channel 1 3 4
  • ELK Channel 2 3 4
  • BEC1 3 4
  • ELK2 3 4
  • Potassium Channel, Voltage Gated Eag Related Subfamily H, Member 3 3
  • Ether-A-Go-Go K(+) Channel Family Member 3
  • KIAA1282 4
  • Kv12.2 3

External Ids for KCNH3 Gene

Previous GeneCards Identifiers for KCNH3 Gene

  • GC12P050150
  • GC12P049989
  • GC12P049649
  • GC12P048219
  • GC12P049933
  • GC12P046963

Summaries for KCNH3 Gene

Entrez Gene Summary for KCNH3 Gene

  • The protein encoded by this gene is a voltage-gated potassium channel alpha subunit predominantly expressed in the forebrain. Studies in mice have found that cognitive function increases when this gene is knocked out. In humans, the encoded protein has been shown to be capable of binding glycoprotein 120 of the human immunodeficiency virus type 1 (HIV-1) envelope. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2015]

GeneCards Summary for KCNH3 Gene

KCNH3 (Potassium Voltage-Gated Channel Subfamily H Member 3) is a Protein Coding gene. Diseases associated with KCNH3 include Background Diabetic Retinopathy. Among its related pathways are Potassium Channels and Transmission across Chemical Synapses. GO annotations related to this gene include signal transducer activity and voltage-gated potassium channel activity. An important paralog of this gene is KCNH4.

UniProtKB/Swiss-Prot for KCNH3 Gene

  • Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits an outward current with fast inactivation. Channel properties may be modulated by cAMP and subunit assembly.

Tocris Summary for KCNH3 Gene

  • Voltage-gated potassium channels (KV) belong to the 6-TM family of potassium channel that also comprises the Ca2+-activated Slo (actually 7-TM) and the Ca2+-activated SK subfamilies. The alpha-subunits contain a single pore-forming region and combine to form tetramers.

Gene Wiki entry for KCNH3 Gene

No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNH3 Gene

Genomics for KCNH3 Gene

Regulatory Elements for KCNH3 Gene

Enhancers for KCNH3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G049364 1.4 FANTOM5 ENCODE 11.9 -171.4 -171409 5.9 PKNOX1 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 DDX23 CCNT1 LOC390314 KANSL2 BCDIN3D TUBA1A KCNH3 MCRS1 SPATS2 DNAJC22
GH12G049488 1.5 Ensembl ENCODE dbSUPER 11 -48.3 -48324 3.8 FOXA2 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 GATA2 FOS ZNF263 TSHZ1 DDX23 CCNT1 LOC390314 KCNH3 KANSL2 BCDIN3D LOC101927267 MCRS1 LIMA1 SPATS2
GH12G049501 1.3 Ensembl ENCODE dbSUPER 12.1 -33.8 -33783 7.1 BCOR CTCF PTBP1 CBX3 JUN ZMYM3 SIN3A ZIC2 RAD21 ZNF766 SPATS2 KCNH3 C1QL4 MCRS1 PRPH DNAJC22 ENSG00000257464
GH12G049515 1.2 Ensembl ENCODE dbSUPER 12 -23.7 -23678 1.2 JUN ZIC2 ZNF335 FOSL1 ZFHX2 ZNF600 FOS ZNF263 MAZ BHLHE40 SPATS2 KCNH3 C1QL4 MCRS1 PRPH FMNL3 TMBIM6 ENSG00000257464
GH12G049358 1.1 Ensembl ENCODE 11.6 -180.1 -180141 0.6 CTCF MXI1 ESRRA CBX3 ARNT ARID4B ZNF384 ZNF2 RAD21 RFX5 KCNH3 C1QL4 MCRS1 CCNT1 SPATS2 DNAJC22
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNH3 on UCSC Golden Path with GeneCards custom track

Promoters for KCNH3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000051632 -41 801 CTCF KLF1 SUZ12 BMI1 ZIC2 ZFHX2 GLIS2 EGR1 PATZ1 PCBP1

Genomic Location for KCNH3 Gene

Chromosome:
12
Start:
49,539,041 bp from pter
End:
49,558,308 bp from pter
Size:
19,268 bases
Orientation:
Plus strand

Genomic View for KCNH3 Gene

Genes around KCNH3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNH3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNH3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNH3 Gene

Proteins for KCNH3 Gene

  • Protein details for KCNH3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9ULD8-KCNH3_HUMAN
    Recommended name:
    Potassium voltage-gated channel subfamily H member 3
    Protein Accession:
    Q9ULD8
    Secondary Accessions:
    • Q9UQ06

    Protein attributes for KCNH3 Gene

    Size:
    1083 amino acids
    Molecular mass:
    117129 Da
    Quaternary structure:
    • The potassium channel is probably composed of a homo- or heterotetrameric complex of pore-forming alpha subunits that can associate with modulating beta subunits.
    SequenceCaution:
    • Sequence=BAA86596.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for KCNH3 Gene

Post-translational modifications for KCNH3 Gene

  • Glycosylation at posLast=421421, posLast=428428, and isoforms=436
  • Modification sites at PhosphoSitePlus

Other Protein References for KCNH3 Gene

No data available for DME Specific Peptides for KCNH3 Gene

Domains & Families for KCNH3 Gene

Gene Families for KCNH3 Gene

Suggested Antigen Peptide Sequences for KCNH3 Gene

Graphical View of Domain Structure for InterPro Entry

Q9ULD8

UniProtKB/Swiss-Prot:

KCNH3_HUMAN :
  • The segment S4 is probably the voltage-sensor and is characterized by a series of positively charged amino acids at every third position.
  • Belongs to the potassium channel family. H (Eag) (TC 1.A.1.20) subfamily. Kv12.2/KCNH3 sub-subfamily.
Domain:
  • The segment S4 is probably the voltage-sensor and is characterized by a series of positively charged amino acids at every third position.
Family:
  • Belongs to the potassium channel family. H (Eag) (TC 1.A.1.20) subfamily. Kv12.2/KCNH3 sub-subfamily.
genes like me logo Genes that share domains with KCNH3: view

Function for KCNH3 Gene

Molecular function for KCNH3 Gene

GENATLAS Biochemistry:
potassium voltage-gated channel,subfamily H (eag-related),member 3,ether-a-go-go K+ channel family member,exclusively expressed in the brain,mainly in the cerebral cortex,amygdala,hippocampus and striatum
UniProtKB/Swiss-Prot Function:
Pore-forming (alpha) subunit of voltage-gated potassium channel. Elicits an outward current with fast inactivation. Channel properties may be modulated by cAMP and subunit assembly.

Gene Ontology (GO) - Molecular Function for KCNH3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000155 phosphorelay sensor kinase activity IEA --
GO:0005216 ion channel activity IEA --
GO:0005244 voltage-gated ion channel activity IEA --
GO:0005249 voltage-gated potassium channel activity TAS 10455180
GO:0005267 potassium channel activity IEA --
genes like me logo Genes that share ontologies with KCNH3: view
genes like me logo Genes that share phenotypes with KCNH3: view

Animal Models for KCNH3 Gene

MGI Knock Outs for KCNH3:

Animal Model Products

  • Taconic Biosciences Mouse Models for KCNH3

CRISPR Products

miRNA for KCNH3 Gene

miRTarBase miRNAs that target KCNH3

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for KCNH3 Gene

Localization for KCNH3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for KCNH3 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for KCNH3 gene
Compartment Confidence
plasma membrane 5
nucleus 2

Gene Ontology (GO) - Cellular Components for KCNH3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane NAS 10455180
genes like me logo Genes that share ontologies with KCNH3: view

Pathways & Interactions for KCNH3 Gene

genes like me logo Genes that share pathways with KCNH3: view

Pathways by source for KCNH3 Gene

1 Qiagen pathway for KCNH3 Gene

Gene Ontology (GO) - Biological Process for KCNH3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000160 phosphorelay signal transduction system IEA --
GO:0006810 transport IEA --
GO:0006811 ion transport IEA --
GO:0006813 potassium ion transport TAS 10455180
GO:0023014 signal transduction by protein phosphorylation IEA --
genes like me logo Genes that share ontologies with KCNH3: view

No data available for SIGNOR curated interactions for KCNH3 Gene

Drugs & Compounds for KCNH3 Gene

(6) Drugs for KCNH3 Gene - From: DGIdb, IUPHAR, HMDB, and Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
4-Aminopyridine Approved Pharma Pore Blocker potassium channel-blocking agent, Non-selective KV channel blocker 69
cyclic amp Experimental Pharma 0
Cs<sup>+</sup> Pharma Antagonist, Pore Blocker 0
E-4031 dihydrochloride Pharma KV11.1 (hERG) channel blocker; inhibits rapid delayed rectifier K+ current (IKr) 0
Linopirdine dihydrochloride Pharma KV7 (KCNQ) channel blocker 0

(1) Additional Compounds for KCNH3 Gene - From: Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
HMR 1556
223749-46-0

(5) Tocris Compounds for KCNH3 Gene

Compound Action Cas Number
4-Aminopyridine Non-selective KV channel blocker 504-24-5
E-4031 dihydrochloride KV11.1 (hERG) channel blocker; inhibits rapid delayed rectifier K+ current (IKr) 113559-13-0
HMR 1556 Potent and selective Iks channel blocker 223749-46-0
Linopirdine dihydrochloride KV7 (KCNQ) channel blocker 113168-57-3
XE 991 dihydrochloride Potent, selective KV7 (KCNQ) channel blocker; blocks M-currents 122955-13-9
genes like me logo Genes that share compounds with KCNH3: view

Transcripts for KCNH3 Gene

Unigene Clusters for KCNH3 Gene

Potassium voltage-gated channel, subfamily H (eag-related), member 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNH3 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17
SP1: -
SP2:
SP3:

Relevant External Links for KCNH3 Gene

GeneLoc Exon Structure for
KCNH3
ECgene alternative splicing isoforms for
KCNH3

Expression for KCNH3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNH3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for KCNH3 Gene

This gene is overexpressed in Brain - Cortex (x9.6), Brain - Frontal Cortex (BA9) (x6.5), Brain - Anterior cingulate cortex (BA24) (x5.8), Brain - Amygdala (x4.9), and Brain - Hippocampus (x4.9).

Protein differential expression in normal tissues from HIPED for KCNH3 Gene

This gene is overexpressed in Colon (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for KCNH3 Gene



Protein tissue co-expression partners for KCNH3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of KCNH3 Gene:

KCNH3

SOURCE GeneReport for Unigene cluster for KCNH3 Gene:

Hs.64064

mRNA Expression by UniProt/SwissProt for KCNH3 Gene:

Q9ULD8-KCNH3_HUMAN
Tissue specificity: Detected only in brain, in particular in the telencephalon. Detected in the cerebral cortex, occipital pole, frontal and temporal lobe, putamen, amygdala, hippocampus and caudate nucleus.

Evidence on tissue expression from TISSUES for KCNH3 Gene

  • Nervous system(4.4)
genes like me logo Genes that share expression patterns with KCNH3: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNH3 Gene

Orthologs for KCNH3 Gene

This gene was present in the common ancestor of animals.

Orthologs for KCNH3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KCNH3 34 35
  • 99.63 (n)
cow
(Bos Taurus)
Mammalia KCNH3 34 35
  • 92.3 (n)
dog
(Canis familiaris)
Mammalia KCNH3 34 35
  • 90.77 (n)
mouse
(Mus musculus)
Mammalia Kcnh3 34 16 35
  • 89.6 (n)
rat
(Rattus norvegicus)
Mammalia Kcnh3 34
  • 89.1 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 68 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia KCNH3 35
  • 68 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100492237 34
  • 61.54 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100006614 34
  • 63.85 (n)
kcnh3 35
  • 58 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta elk 36 35
  • 48 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 48 (a)
OneToMany
Species where no ortholog for KCNH3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for KCNH3 Gene

ENSEMBL:
Gene Tree for KCNH3 (if available)
TreeFam:
Gene Tree for KCNH3 (if available)

Paralogs for KCNH3 Gene

(6) SIMAP similar genes for KCNH3 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with KCNH3: view

Variants for KCNH3 Gene

Sequence variations from dbSNP and Humsavar for KCNH3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000072027 -- 49,548,407(+) TGAGT(A/G)GTTTG intron-variant
rs1000163538 -- 49,538,008(+) CGCAG(C/T)GCGGG upstream-variant-2KB
rs1000458257 -- 49,554,987(+) ATTGT(C/T)ACTAA intron-variant, upstream-variant-2KB
rs1000470759 -- 49,544,015(+) TTCCT(A/G)CTGGA nc-transcript-variant, reference, synonymous-codon, utr-variant-5-prime
rs1000522784 -- 49,543,619(+) CCCTC(A/C/G)CTCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KCNH3 Gene

Variant ID Type Subtype PubMed ID
nsv1118238 CNV deletion 24896259
nsv832406 CNV loss 17160897

Variation tolerance for KCNH3 Gene

Residual Variation Intolerance Score: 6.22% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.88; 74.15% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for KCNH3 Gene

Human Gene Mutation Database (HGMD)
KCNH3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNH3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KCNH3 Gene

Disorders for KCNH3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for KCNH3 Gene - From: DISEASES

Disorder Aliases PubMed IDs
background diabetic retinopathy
  • non proliferative diabetic retinopathy
- elite association - COSMIC cancer census association via MalaCards
Search KCNH3 in MalaCards View complete list of genes associated with diseases

Relevant External Links for KCNH3

Genetic Association Database (GAD)
KCNH3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCNH3
genes like me logo Genes that share disorders with KCNH3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for KCNH3 Gene

Publications for KCNH3 Gene

  1. New ether-a-go-go K+ channel family members localized in human telencephalon. (PMID: 10455180) Miyake A. … Furuichi K. (J. Biol. Chem. 1999) 2 3 4 22 64
  2. International Union of Pharmacology. LIII. Nomenclature and molecular relationships of voltage-gated potassium channels. (PMID: 16382104) Gutman G.A. … Wang X. (Pharmacol. Rev. 2005) 2 3 64
  3. Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10574462) Nagase T. … Ohara O. (DNA Res. 1999) 3 4 64
  4. Bimodal regulation of an Elk subfamily K+ channel by phosphatidylinositol 4,5-bisphosphate. (PMID: 26503718) Li X. … Jegla T. (J. Gen. Physiol. 2015) 3 64
  5. Interaction of human immunodeficiency virus gp120 with the voltage-gated potassium channel BEC1. (PMID: 20638388) Herrmann M. … Mueller-Lantzsch N. (FEBS Lett. 2010) 3 64

Products for KCNH3 Gene

Sources for KCNH3 Gene

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