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Aliases for KCNH1-IT1 Gene

Subcategory (RNA class) for KCNH1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for KCNH1-IT1 Gene

  • KCNH1 Intronic Transcript 1 2 3 5
  • KCNH1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KCNH1-IT1 Gene

Previous GeneCards Identifiers for KCNH1-IT1 Gene

  • GC00U933307
  • GC01M211306

Summaries for KCNH1-IT1 Gene

GeneCards Summary for KCNH1-IT1 Gene

KCNH1-IT1 (KCNH1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNH1-IT1 Gene

Genomics for KCNH1-IT1 Gene

Regulatory Elements for KCNH1-IT1 Gene

Enhancers for KCNH1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F210581 0.5 ENCODE 12.1 +550.7 550726 1.5 ARID1B ZNF680 KLF16 GATA2 NCOR1 NR2F1 NR2F6 CREM HES1 GABPA KCNH1 KCNH1-IT1 ENSG00000279333 LOC100421537
GH01F210415 0.2 ENCODE 12 +716.1 716082 2.6 CTCF ZNF146 KCNH1 KCNH1-IT1 IRF6 GC01M210375 RNU5A-8P LOC100421537
GH01F210584 1.1 Ensembl ENCODE 11.9 +548.7 548725 0.3 HDGF CTCF PKNOX1 SIN3A RAD21 ZNF316 ZBTB48 ZNF143 SMC3 NFE2 KCNH1 KCNH1-IT1 ENSG00000279333 LOC100421537
GH01F210418 0.2 ENCODE 11.6 +714.1 714095 0.8 NR3C1 KCNH1 KCNH1-IT1 TRAF3IP3 LOC100421537 GC01M210375 RNU5A-8P
GH01F210406 0.2 ENCODE 11.2 +725.9 725894 1.1 CTCF PKNOX1 KLF17 ZIC2 RAD21 ZEB1 ZNF101 RFX5 ZNF143 SMC3 KCNH1 KCNH1-IT1 GC01M210375 RNU5A-8P LOC100421537
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around KCNH1-IT1 on UCSC Golden Path with GeneCards custom track

Promoters for KCNH1-IT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082682 -626 1201 ATF1 CREB3L1 SIN3A FEZF1 ZNF48 GLIS2 CBX5 ZNF143 ZMIZ1 KLF13

Genomic Location for KCNH1-IT1 Gene

211,132,588 bp from pter
211,133,374 bp from pter
787 bases
Minus strand

Genomic View for KCNH1-IT1 Gene

Genes around KCNH1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNH1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNH1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for KCNH1-IT1 Gene

Proteins for KCNH1-IT1 Gene

Post-translational modifications for KCNH1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNH1-IT1 Gene

Domains & Families for KCNH1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNH1-IT1 Gene

Function for KCNH1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNH1-IT1 Gene

Localization for KCNH1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCNH1-IT1 Gene

Pathways & Interactions for KCNH1-IT1 Gene

SuperPathways for KCNH1-IT1 Gene

No Data Available

Interacting Proteins for KCNH1-IT1 Gene

Gene Ontology (GO) - Biological Process for KCNH1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for KCNH1-IT1 Gene

Transcripts for KCNH1-IT1 Gene

mRNA/cDNA for KCNH1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KCNH1-IT1 Gene

No ASD Table

Relevant External Links for KCNH1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for KCNH1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KCNH1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNH1-IT1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.4), Brain - Cerebellum (x5.8), Brain - Cortex (x4.9), and Brain - Frontal Cortex (BA9) (x4.4).
genes like me logo Genes that share expression patterns with KCNH1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KCNH1-IT1 Gene

Orthologs for KCNH1-IT1 Gene

Evolution for KCNH1-IT1 Gene

Gene Tree for KCNH1-IT1 (if available)
Gene Tree for KCNH1-IT1 (if available)

No data available for Orthologs for KCNH1-IT1 Gene

Paralogs for KCNH1-IT1 Gene

No data available for Paralogs for KCNH1-IT1 Gene

Variants for KCNH1-IT1 Gene

Relevant External Links for KCNH1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNH1-IT1 Gene

Disorders for KCNH1-IT1 Gene

No disorders were found for KCNH1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KCNH1-IT1 Gene

Publications for KCNH1-IT1 Gene

No publications were found for KCNH1-IT1 Gene.

Products for KCNH1-IT1 Gene

Sources for KCNH1-IT1 Gene

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