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Aliases for KCNH1-IT1 Gene

Subcategory (RNA class) for KCNH1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for KCNH1-IT1 Gene

  • KCNH1 Intronic Transcript 1 2 3 5
  • KCNH1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KCNH1-IT1 Gene

Previous GeneCards Identifiers for KCNH1-IT1 Gene

  • GC00U933307
  • GC01M211306

Summaries for KCNH1-IT1 Gene

GeneCards Summary for KCNH1-IT1 Gene

KCNH1-IT1 (KCNH1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNH1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNH1-IT1 Gene

Genomics for KCNH1-IT1 Gene

Regulatory Elements for KCNH1-IT1 Gene

Enhancers for KCNH1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H210584 1.3 Ensembl ENCODE dbSUPER 11.9 +548.8 548774 0.4 HDGF CTCF PKNOX1 NFIB SIN3A RAD21 ZNF316 ZBTB48 SMC3 ZNF143 KCNH1 KCNH1-IT1 ENSG00000279333 LOC100421537
GH01H210406 1.1 Ensembl ENCODE 11.2 +725.9 725894 1.1 CTCF PKNOX1 MXI1 RB1 KLF17 ZIC2 RAD21 ZEB1 RFX5 GATA3 KCNH1 KCNH1-IT1 GC01M210375 RNU5A-8P LOC100421537
GH01H210581 0.6 ENCODE 12.1 +550.7 550726 1.5 CTBP1 GATA2 NCOR1 KLF16 TAL1 ZEB2 CREM GABPA KCNH1 KCNH1-IT1 ENSG00000279333 LOC100421537
GH01H210418 0.4 ENCODE 11.6 +714.1 714095 0.8 NR3C1 KCNH1 KCNH1-IT1 TRAF3IP3 LOC100421537 RNU5A-8P GC01M210375
GH01H210415 0.2 ENCODE 12 +716.1 716082 2.6 KCNH1 KCNH1-IT1 IRF6 RNU5A-8P GC01M210375 LOC100421537
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNH1-IT1 on UCSC Golden Path with GeneCards custom track

Promoters for KCNH1-IT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000019532 -626 801 ATF1 ARNT SIN3A FEZF1 GLIS2 CBX5 ZNF143 ATF7 SP3 ZC3H11A

Genomic Locations for KCNH1-IT1 Gene

Genomic Locations for KCNH1-IT1 Gene
787 bases
Minus strand

Genomic View for KCNH1-IT1 Gene

Genes around KCNH1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNH1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNH1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for KCNH1-IT1 Gene

Proteins for KCNH1-IT1 Gene

Post-translational modifications for KCNH1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNH1-IT1 Gene

Domains & Families for KCNH1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNH1-IT1 Gene

Function for KCNH1-IT1 Gene

Phenotypes From GWAS Catalog for KCNH1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNH1-IT1 Gene

Localization for KCNH1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNH1-IT1 Gene

Pathways & Interactions for KCNH1-IT1 Gene

SuperPathways for KCNH1-IT1 Gene

No Data Available

Interacting Proteins for KCNH1-IT1 Gene

Gene Ontology (GO) - Biological Process for KCNH1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for KCNH1-IT1 Gene

Drugs & Compounds for KCNH1-IT1 Gene

No Compound Related Data Available

Transcripts for KCNH1-IT1 Gene

mRNA/cDNA for KCNH1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNH1-IT1 Gene

No ASD Table

Relevant External Links for KCNH1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for KCNH1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNH1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNH1-IT1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.4), Brain - Cerebellum (x5.8), Brain - Cortex (x4.9), and Brain - Frontal Cortex (BA9) (x4.4).
genes like me logo Genes that share expression patterns with KCNH1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNH1-IT1 Gene

Orthologs for KCNH1-IT1 Gene

Evolution for KCNH1-IT1 Gene

Gene Tree for KCNH1-IT1 (if available)
Gene Tree for KCNH1-IT1 (if available)

No data available for Orthologs for KCNH1-IT1 Gene

Paralogs for KCNH1-IT1 Gene

No data available for Paralogs for KCNH1-IT1 Gene

Variants for KCNH1-IT1 Gene

Relevant External Links for KCNH1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCNH1-IT1 Gene

Disorders for KCNH1-IT1 Gene

Relevant External Links for KCNH1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for KCNH1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNH1-IT1 Gene

Publications for KCNH1-IT1 Gene

No publications were found for KCNH1-IT1 Gene.

Products for KCNH1-IT1 Gene

Sources for KCNH1-IT1 Gene

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