Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KCND3-IT1 Gene

Subcategory (RNA class) for KCND3-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCND3-IT1 Gene

  • KCND3 Intronic Transcript 1 2 3 5
  • KCND3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KCND3-IT1 Gene

Previous GeneCards Identifiers for KCND3-IT1 Gene

  • GC00U933371
  • GC01M112397

Summaries for KCND3-IT1 Gene

GeneCards Summary for KCND3-IT1 Gene

KCND3-IT1 (KCND3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCND3-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCND3-IT1 Gene

Genomics for KCND3-IT1 Gene

GeneHancer (GH) Regulatory Elements for KCND3-IT1 Gene

Promoters and enhancers for KCND3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I111878 Enhancer 0.9 ENCODE dbSUPER 0.3 -22.2 -22171 1.4 GTF2F1 ESRRA NEUROD1 KLF17 RFX5 CTBP1 HSF1 FOS MAZ RXRA KCND3-AS1 PIR54809 KCND3-IT1 KCND3
GH01I111874 Enhancer 0.6 dbSUPER 0.4 -19.6 -19555 3.2 SREBF1 ATF4 ESRRA ZNF512B POLR2A HSF1 PAX8 CEBPG KCND3-AS1 KCND3-IT1 PIR54809 KCND3
GH01I111893 Enhancer 0.8 dbSUPER 0.3 -37.5 -37496 1.4 HDGF NFIB NEUROD1 NFXL1 ZBTB7B ZNF207 RCOR1 ZNF263 RXRA GATAD2B CEPT1 DRAM2 ENSG00000243960 KCND3 PIR54809 KCND3-IT1
GH01I111880 Enhancer 0.7 ENCODE dbSUPER 0.3 -24.7 -24664 2.3 SREBF1 ZNF512B RXRA POLR2A SIN3A HNF4A KCND3-AS1 PIR54809 KCND3-IT1 KCND3
GH01I111895 Enhancer 0.6 FANTOM5 dbSUPER 0.3 -39.1 -39135 0.6 ZBTB33 FOS PIR54809 KCND3-IT1 KCND3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KCND3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCND3-IT1 Gene

Genomic Locations for KCND3-IT1 Gene
chr1:111,853,762-111,856,905
(GRCh38/hg38)
Size:
3,144 bases
Orientation:
Minus strand
chr1:112,396,384-112,399,527
(GRCh37/hg19)

Genomic View for KCND3-IT1 Gene

Genes around KCND3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCND3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCND3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCND3-IT1 Gene

Proteins for KCND3-IT1 Gene

Post-translational modifications for KCND3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCND3-IT1 Gene

Domains & Families for KCND3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCND3-IT1 Gene

Function for KCND3-IT1 Gene

Phenotypes From GWAS Catalog for KCND3-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCND3-IT1 Gene

Localization for KCND3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCND3-IT1 Gene

Pathways & Interactions for KCND3-IT1 Gene

SuperPathways for KCND3-IT1 Gene

No Data Available

Interacting Proteins for KCND3-IT1 Gene

Gene Ontology (GO) - Biological Process for KCND3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCND3-IT1 Gene

Drugs & Compounds for KCND3-IT1 Gene

No Compound Related Data Available

Transcripts for KCND3-IT1 Gene

mRNA/cDNA for KCND3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCND3-IT1 Gene

No ASD Table

Relevant External Links for KCND3-IT1 Gene

GeneLoc Exon Structure for
KCND3-IT1
ECgene alternative splicing isoforms for
KCND3-IT1

Expression for KCND3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCND3-IT1 Gene

genes like me logo Genes that share expression patterns with KCND3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCND3-IT1 Gene

Orthologs for KCND3-IT1 Gene

Evolution for KCND3-IT1 Gene

ENSEMBL:
Gene Tree for KCND3-IT1 (if available)
TreeFam:
Gene Tree for KCND3-IT1 (if available)

No data available for Orthologs for KCND3-IT1 Gene

Paralogs for KCND3-IT1 Gene

No data available for Paralogs for KCND3-IT1 Gene

Variants for KCND3-IT1 Gene

Sequence variations from dbSNP and Humsavar for KCND3-IT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000634114 -- 111,856,406(-) T/C intron_variant
rs1000686523 -- 111,856,042(-) C/G intron_variant
rs1001075267 -- 111,857,994(-) G/T upstream_transcript_variant
rs1001526124 -- 111,853,621(-) C/T downstream_transcript_variant
rs1003534290 -- 111,856,099(-) G/A intron_variant

Additional Variant Information for KCND3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCND3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCND3-IT1 Gene

Disorders for KCND3-IT1 Gene

Additional Disease Information for KCND3-IT1

No disorders were found for KCND3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCND3-IT1 Gene

Publications for KCND3-IT1 Gene

No publications were found for KCND3-IT1 Gene.

Products for KCND3-IT1 Gene

Sources for KCND3-IT1 Gene

Content
Loading form....