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Aliases for KCND3-IT1 Gene

Subcategory (RNA class) for KCND3-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCND3-IT1 Gene

  • KCND3 Intronic Transcript 1 2 3 5
  • KCND3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for KCND3-IT1 Gene

Previous GeneCards Identifiers for KCND3-IT1 Gene

  • GC00U933371
  • GC01M112397

Summaries for KCND3-IT1 Gene

GeneCards Summary for KCND3-IT1 Gene

KCND3-IT1 (KCND3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCND3-IT1 Gene

Genomics for KCND3-IT1 Gene

Regulatory Elements for KCND3-IT1 Gene

Enhancers for KCND3-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F111878 0.9 Ensembl ENCODE 0.3 -22.2 -22172 1.4 GTF2F1 MAZ ESRRA KLF17 DPF2 CTBP1 MTA1 FOS KCND3-AS1 PIR54809 KCND3-IT1
GH01F111845 0.6 FANTOM5 0.4 +11.7 11722 0.2 NONO ZNF366 ZNF512 ETV6 KCND3 KCND3-IT1 GC01M111786
GH01F111880 0.5 ENCODE 0.3 -24.7 -24664 2.3 SMARCA4 POLR2A RNF2 NR2F2 KCND3-AS1 PIR54809 KCND3-IT1
GH01F111895 0.5 FANTOM5 0.3 -39.1 -39135 0.6 ZBTB33 FOS PIR54809 KCND3-IT1
GH01F111841 0.4 FANTOM5 0.3 +15.3 15305 0.3 HLF KCND3 KCND3-IT1 GC01M111786
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCND3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KCND3-IT1 Gene

Chromosome:
1
Start:
111,853,762 bp from pter
End:
111,856,905 bp from pter
Size:
3,144 bases
Orientation:
Minus strand

Genomic View for KCND3-IT1 Gene

Genes around KCND3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCND3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCND3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCND3-IT1 Gene

Proteins for KCND3-IT1 Gene

Post-translational modifications for KCND3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCND3-IT1 Gene

Domains & Families for KCND3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCND3-IT1 Gene

Function for KCND3-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCND3-IT1 Gene

Localization for KCND3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCND3-IT1 Gene

Pathways & Interactions for KCND3-IT1 Gene

SuperPathways for KCND3-IT1 Gene

No Data Available

Interacting Proteins for KCND3-IT1 Gene

Gene Ontology (GO) - Biological Process for KCND3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCND3-IT1 Gene

Transcripts for KCND3-IT1 Gene

mRNA/cDNA for KCND3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KCND3-IT1 Gene

No ASD Table

Relevant External Links for KCND3-IT1 Gene

GeneLoc Exon Structure for
KCND3-IT1
ECgene alternative splicing isoforms for
KCND3-IT1

Expression for KCND3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KCND3-IT1 Gene

genes like me logo Genes that share expression patterns with KCND3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KCND3-IT1 Gene

Orthologs for KCND3-IT1 Gene

Evolution for KCND3-IT1 Gene

ENSEMBL:
Gene Tree for KCND3-IT1 (if available)
TreeFam:
Gene Tree for KCND3-IT1 (if available)

No data available for Orthologs for KCND3-IT1 Gene

Paralogs for KCND3-IT1 Gene

No data available for Paralogs for KCND3-IT1 Gene

Variants for KCND3-IT1 Gene

Sequence variations from dbSNP and Humsavar for KCND3-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs114128433 -- 111,854,266(+) AAATA(C/T)GAACT intron-variant
rs114937312 -- 111,856,422(+) TCTCT(A/G)CGTGC intron-variant
rs115035657 -- 111,854,040(+) GAAGG(A/T)TTTTT intron-variant, nc-transcript-variant
rs115410680 -- 111,853,760(+) CACCT(A/G)GTAGG intron-variant, downstream-variant-500B
rs115556845 -- 111,853,959(+) ACCAG(C/T)GTAGC intron-variant, nc-transcript-variant

Relevant External Links for KCND3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCND3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KCND3-IT1 Gene

Disorders for KCND3-IT1 Gene

Relevant External Links for KCND3-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCND3-IT1

No disorders were found for KCND3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCND3-IT1 Gene

Publications for KCND3-IT1 Gene

No publications were found for KCND3-IT1 Gene.

Products for KCND3-IT1 Gene

Sources for KCND3-IT1 Gene

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