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Aliases & Descriptions for KCND3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases KCND3L 2 , 5 KCND3S 2 , 5 KSHIVB 1 , 2 KV4.3 2 Kv4.3 1 MGC142035 2 MGC142037 2 OTTHUMP00000013771 2 OTTHUMP00000013772 2 OTTHUMP00000063948 2
Descriptions Voltage-gated potassium channel subunit Kv4.3 3 potassium ionic channel Kv4.3 2 potassium voltage-gated channel, Shal-related subfamily, member 3 2 sha1-related potassium channel Kv4.3 2 voltage-gated K+ channel 2 voltage-gated potassium channel Kv4.3 2
Search outside databases for aliases for KCND3 genePrevious GC identifers: GC01M112734 GC01M111189 GC01M111420 GC01M111617 GC01M112030
Summaries for KCND3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCND3 : Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ionchannels from both functional and structural standpoints. Their diverse functions includeregulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability,epithelial electrolyte transport, smooth muscle contraction, and cell volume. Foursequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified inDrosophila, and each has been shown to have human homolog(s). This gene encodes a member of thepotassium channel, voltage-gated, shal-related subfamily, members of which form voltage-activatedA-type potassium ion channels and are prominent in the repolarization phase of the actionpotential. This member includes two isoforms with different sizes, which are encoded byalternatively spliced transcript variants of this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: KCND3_HUMAN, Q9UK17 Function : Pore-forming (alpha) subunit of voltage-gated rapidly inactivating A-type potassiumchannels. May contribute to I(To) current in heart and I(Sa) current in neurons. Channelproperties are modulated by interactions with other alpha subunits and with regulatory subunits
Gene Wiki entry for KCND3
Genomic Location for KCND3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCND3 gene Entrez Gene cytogenetic band: 1p13.3 Ensembl cytogenetic band: 1p13.2 HGNC cytogenetic band: 1p13.2 KCND3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M112114:
(about GC identifiers )
Start:
112,114,807 bp from pter
End:
112,333,300 bp from pter
Size:
218,494 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_019273.18 Proteins for KCND3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCND3_HUMAN, Q9UK17 (See
protein sequence )Recommended Name: Potassium voltage-gated channel subfamily D member 3 Size : 655 amino acids; 73451 Da
Subunit : Homotetramer or heterotetramer with KCND1 and/or KCND2. Associates with the regulatorysubunits KCNIP1, KCNIP2, KCNIP3 and KCNIP4 (By similarity). Interacts with KCNE1, KCNE2, SCN1B andKCNAB1 and DLG1
Subcellular location : Membrane; Multi-pass membrane protein. Cell membrane, sarcolemma (Bysimilarity)
PDB structure from and Proteopedia : 1S1G (3D)
 2NZ0 (3D)
 
Secondary accessions : O60576 O60577 Q5T0M0 Q9UH85 Q9UH86 Q9UK16Alternative splicing : 2 isoforms : Q9UK17-1 Q9UK17-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_004971.2 NP_751948.1 ENSEMBL proteins: ENSP00000306923 ENSP00000358711 ENSP00000319591 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for KCND3: Assays for KCND3:
Protein
Domains/ Families for KCND3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9UK17 ProtoNet protein and cluster: Q9UK17
4 Blocks protein families : IPB000210 BTB/POZ domain IPB003091 Potassium channel signature IPB003975 Shal voltage-gated K+ channel family signature IPB004056 Kv4.3 voltage-gated K+ channel signature UniProtKB/Swiss-Prot: KCND3_HUMAN, Q9UK17 Domain : The segment S4 is probably the voltage-sensor and is characterized by a series ofpositively charged amino acids at every third position Similarity : Belongs to the potassium channel family. D (Shal) subfamily
Gene Function for KCND3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004980 Applied Biosystems Silencer ® siRNAs for KCND3 Sigma-Aldrich siRNA and siRNA Panels for KCND3 Sigma-Aldrich shRNA Panels and shRNA for KCND3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004980                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004980                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_004980  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004980 UniProtKB/Swiss-Prot: KCND3_HUMAN, Q9UK17 Function : Pore-forming (alpha) subunit of voltage-gated rapidly inactivating A-type potassiumchannels. May contribute to I(To) current in heart and I(Sa) current in neurons. Channelproperties are modulated by interactions with other alpha subunits and with regulatory subunits
Genatlas biochemistry entry for KCND3 :potassium voltage-gated channel,Shal-related family member 3,expressed in the cerebral cortex(mouse Kv8.1 homolog),inhibiting expression of Shaw channels
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Kcnd3) :5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
GO ID Qualified GO term Evidence PubMed IDs GO:0005244 voltage-gated ion channel activity
IEA -- GO:0005249 voltage-gated potassium channel activity
IEA -- GO:0005250 A-type (transient outward) potassium channel activity
TAS 8734615 GO:0005515 protein binding
IEA -- GO:0008270 zinc ion binding
IEA --
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Pathways & Interactions for KCND3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for KCND3 5/51 Interacting proteins for KCND3 (ENSP00000319591 3 ) via UniProtKB, MINT, and/or STRING (see all 51
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for KCND3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for KCND3
Compounds for KCND3 available from Tocris Bioscience About this table 3 Novoseek chemical compound relationships for KCND3 gene
About this table 1 PharmGKB drug compound relationship for KCND3 gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
antiarrhythmics FA  8831489
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Transcripts for KCND3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004980 Sigma-Aldrich siRNA and siRNA Panels for KCND3 Sigma-Aldrich shRNA Panels and shRNA for KCND3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004980 NM_172198
REFSEQ mRNAs for KCND3 gene (2 alternative transcripts): NM_004980.3 NM_172198.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004980 NM_172198
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004980                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004980                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_004980  
Additional cDNA sequence: AF048712.1 AF048713.1 AF120491.1 AF187963.1 AF187964.1 AF205856.1 AF205857.1 AY863198.1 BC113475.1 BC113477.1 BC143390.1
3 DOTS entries : DT.91801062 DT.91801061 DT.65286287
12 AceView cDNA sequences :NM_004980 BX096687 NM_172198 AF187963 AF187964 BI033106 AF205856 AF120491 AF048712 AF048713 AF205857 BQ340099
highest scoring ESTs for KCND3 :AF048713 AF120491 AF048712 AF187963 AF187964 AF205856 AF205857 BI033106 BX096687 NM_004980
Unigene Cluster for KCND3: Potassium voltage-gated channel, Shal-related subfamily, member 3 Hs.666367 [show with all ESTs ] Unigene Representative Sequence: AF120491 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for KCND3 ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b SP1 :       -   -                 SP2 :       -   -         -         SP3 :                        
About this scheme ECgene alternative splicing isoforms for KCND3 3 Ensembl transcripts including schematic representations : ENST00000302127
ENST00000369697
ENST00000315987
Expression for KCND3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCND3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCND3 1 / 2 / 3
11 probe-sets matching KCND3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTGGTGGGTGSOURCE GeneReport for Unigene cluster: Hs.666367 Expression variation in blood from EXPOLDB for KCND3
UniProtKB/Swiss-Prot: KCND3_HUMAN, Q9UK17 Tissue specificity : Highly expressed in heart and brain, in particular in cortex, cerebellum,amygdala and caudate nucleus. Detected at lower levels in liver, skeletal muscle, kidney andpancreas. Isoform 1 predominates in most tissues. Isoform 1 and isoform 2 are detected at similarlevels in brain, skeletal muscle and pancreas
Orthologs for KCND3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCND3 gene from 5/9 species (see all 9
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
KCND31
--
potassium voltage-gated channel, Shal-related subfamily, more
93.74(n) 99.24(a)
403758 XM_845974.1 XP_851067.1
chimpanzee (Pan troglodytes)
KCND31
--
potassium voltage-gated channel, Shal-related subfamily, more
98.27(n) 97.56(a)
744303 XM_001158370.1 XP_001158370.1
rat (Rattus norvegicus)
Kcnd31
--
potassium voltage gated channel, Shal-related family, more
91.67(n) 99.06(a)
65195 NM_031739.1 NP_113927.1
mouse (Mus musculus)
Kcnd31 , 5
35
potassium voltage-gated channel, Shal-related family, more 1, 5
91.35(n) 1 99.39(a) 1
56543 1 NM_019931.1 1 NP_064315.1 1 AF107781 5 AF107782 5 (see all 17 )
chicken (Gallus gallus)
KCND31
--
potassium voltage-gated channel, Shal-related subfamily, more
82.6(n) 94.96(a)
374228 NM_204326.1 NP_989657.1
About this table Species with no ortholog for KCND3 ENSEMBL Gene Tree for KCND3 Paralogs for KCND3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCND3 gene KCND2 2 KCND1 2 KCNA7 2
SNPs/Variants for KCND3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCND3 (up to first 250kb)
Disorders & Mutations for KCND3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605411 2 Novoseek disease relationships for KCND3 gene
About this table Genetic Association Database: KCND3 Human Genome Epidemiology Navigator: KCND3 (1 document)
Medical News for KCND3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCND3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/81 PubMed articles for KCND3 gene (see all 81
): Mutations in the genes KCND2 and KCND3 encoding the ion channels Kv4.2 and Kv4.3, conducting the cardiac fast transient outward current (ITO,f), are not a frequent cause of long QT syndrome. (PubMed id 15563876) 1, 3, 6 Frank-Hansen R....Christiansen M. (2005) Genomic organisation and chromosomal localisation of two members of the KCND ion channel family, KCND2 and KCND3. (PubMed id 10942109) 1, 2, 3 Postma A.V....Mannens M.M. (2000) Gene structures and expression profiles of three human KCND (Kv4) potassium channels mediating A-type currents I(TO) and I(SA). (PubMed id 10729221) 1, 3, 4 Isbrandt D.... Pongs O. (2000) Kv4 potassium channels form a tripartite complex with the anchoring protein SAP97 and CaMKII in cardiac myocytes. (PubMed id 19213956) 3, 4 El-Haou S.... Hatem S.N. (2009) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) International Union of Pharmacology. LIII. Nomenclature and molecular relationships of voltage-gated potassium channels. (PubMed id 16382104) 2, 3 Gutman G.A....Wang X. (2005) Two N-terminal domains of Kv4 K(+) channels regulate binding to and modulation by KChIP1. (PubMed id 14980207) 3, 4 Scannevin R.H.... Rhodes K.J. (2004) Modulation of Kv4.3 current by accessory subunits. (PubMed id 12297301) 3, 4 Deschenes I. and Tomaselli G.F. (2002) Cloning and expression of the human Kv4.3 potassium channel. (PubMed id 10200233) 3, 4 Dilks D.... Numann R. (1999) Isolation and characterization of the human gene encoding Ito: further diversity by alternative mRNA splicing. (PubMed id 9843794) 3, 4 Kong W.... Tomaselli G.F. (1998)
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Genome Databases showing KCND3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KCND3
(According to HUGE )
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--
Specialized Databases showing KCND3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for KCND3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KCND3:
Tocris compounds for KCND3
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Databases for KCND3
Disorders for KCND3
Domains/Families for KCND3
Drugs/Compounds for KCND3
Expression for KCND3
Function for KCND3
Location for KCND3
Medical News for KCND3
Orthologs for KCND3
Paralogs for KCND3
Pathways/Interactions for KCND3
Proteins for KCND3
Publications for KCND3
SNPs for KCND3
Search Box for KCND3
Services for KCND3
Summaries for KCND3
Technologies for KCND3
Transcripts for KCND3
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009