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Aliases for KCNC4-AS1 Gene

Subcategory (RNA class) for KCNC4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNC4-AS1 Gene

  • KCNC4 Antisense RNA 1 (Head To Head) 2 3 5
  • KCNC4 Antisense RNA 1 (Non-Protein Coding) 2
  • KCNC4 Antisense RNA 1 2

External Ids for KCNC4-AS1 Gene

Previous GeneCards Identifiers for KCNC4-AS1 Gene

  • GC00U932965
  • GC01M110752

Summaries for KCNC4-AS1 Gene

GeneCards Summary for KCNC4-AS1 Gene

KCNC4-AS1 (KCNC4 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KCNC4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNC4-AS1 Gene

Genomics for KCNC4-AS1 Gene

GeneHancer (GH) Regulatory Elements for KCNC4-AS1 Gene

Promoters and enhancers for KCNC4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I110209 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.6 -622 3.2 HDGF ATF1 GLI4 ZNF2 GLIS2 SP3 SP5 REST SMARCB1 GMEB1 KCNC4 KCNC4-AS1 ENSG00000258634 PSRC1 STRIP1 GSTM2
GH01I110208 Enhancer 0.4 ENCODE dbSUPER 550.8 +1.1 1093 0.2 KCNC4 KCNC4-AS1 ENSG00000235526
GH01I110234 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.2 -25.9 -25889 2 ATF1 INSM2 FEZF1 BATF ZNF2 RFX5 ZNF335 ZNF366 ZSCAN5C ETV6 PROK1 RBM15-AS1 KCNC4 KCNC4-AS1 ENSG00000235526 LOC105378897 ENSG00000200536 RBM15 UBL4B KCNA10
GH01I110312 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.2 -102.6 -102638 0.4 RB1 ZNF2 RAD21 ARID2 ZNF366 ZNF143 SMARCA5 ZNF654 ZNF331 REST GC01M110315 RBM15-AS1 RBM15 KCNC4 KCNC4-AS1 ENSG00000200536 ENSG00000235526 LOC105378897 PROK1 ENSG00000258634
GH01I110421 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10 -211.4 -211437 0.4 HDAC1 ATF1 ZNF766 FOS ATF7 HDAC8 MEF2D SMARCA4 KDM1A PRDM4 GC01M110420 PROK1 CD53 RBM15 RBM15-AS1 KCNC4 KCNC4-AS1 KCNA10 LAMTOR5-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KCNC4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KCNC4-AS1 Gene

Genomic Locations for KCNC4-AS1 Gene
chr1:110,208,450-110,209,987
(GRCh38/hg38)
Size:
1,538 bases
Orientation:
Minus strand
chr1:110,751,456-110,752,609
(GRCh37/hg19)

Genomic View for KCNC4-AS1 Gene

Genes around KCNC4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNC4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNC4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNC4-AS1 Gene

Proteins for KCNC4-AS1 Gene

Post-translational modifications for KCNC4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNC4-AS1 Gene

Domains & Families for KCNC4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNC4-AS1 Gene

Function for KCNC4-AS1 Gene

Phenotypes From GWAS Catalog for KCNC4-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNC4-AS1 Gene

Localization for KCNC4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KCNC4-AS1 Gene

Pathways & Interactions for KCNC4-AS1 Gene

SuperPathways for KCNC4-AS1 Gene

No Data Available

Interacting Proteins for KCNC4-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNC4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNC4-AS1 Gene

Drugs & Compounds for KCNC4-AS1 Gene

No Compound Related Data Available

Transcripts for KCNC4-AS1 Gene

mRNA/cDNA for KCNC4-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNC4-AS1 Gene

No ASD Table

Relevant External Links for KCNC4-AS1 Gene

GeneLoc Exon Structure for
KCNC4-AS1
ECgene alternative splicing isoforms for
KCNC4-AS1

Expression for KCNC4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNC4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNC4-AS1 Gene

This gene is overexpressed in Testis (x7.6) and Kidney - Cortex (x4.1).
genes like me logo Genes that share expression patterns with KCNC4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNC4-AS1 Gene

Orthologs for KCNC4-AS1 Gene

Evolution for KCNC4-AS1 Gene

ENSEMBL:
Gene Tree for KCNC4-AS1 (if available)
TreeFam:
Gene Tree for KCNC4-AS1 (if available)

No data available for Orthologs for KCNC4-AS1 Gene

Paralogs for KCNC4-AS1 Gene

No data available for Paralogs for KCNC4-AS1 Gene

Variants for KCNC4-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNC4-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000314239 -- 110,209,312(-) A/G intron_variant
rs1000428853 -- 110,209,580(-) C/T intron_variant
rs1001309493 -- 110,210,517(-) G/A/T upstream_transcript_variant
rs1001425140 -- 110,210,859(-) C/A upstream_transcript_variant
rs1003786955 -- 110,209,057(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for KCNC4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv991777 CNV deletion 20482838

Additional Variant Information for KCNC4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNC4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNC4-AS1 Gene

Disorders for KCNC4-AS1 Gene

Additional Disease Information for KCNC4-AS1

No disorders were found for KCNC4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNC4-AS1 Gene

Publications for KCNC4-AS1 Gene

No publications were found for KCNC4-AS1 Gene.

Products for KCNC4-AS1 Gene

Sources for KCNC4-AS1 Gene

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