Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KCNC4-AS1 Gene

Subcategory (RNA class) for KCNC4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KCNC4-AS1 Gene

  • KCNC4 Antisense RNA 1 (Head To Head) 2 3 5
  • KCNC4 Antisense RNA 1 (Non-Protein Coding) 2
  • KCNC4 Antisense RNA 1 2

External Ids for KCNC4-AS1 Gene

Previous GeneCards Identifiers for KCNC4-AS1 Gene

  • GC00U932965
  • GC01M110752

Summaries for KCNC4-AS1 Gene

GeneCards Summary for KCNC4-AS1 Gene

KCNC4-AS1 (KCNC4 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KCNC4-AS1 Gene

Genomics for KCNC4-AS1 Gene

Regulatory Elements for KCNC4-AS1 Gene

Enhancers for KCNC4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G110346 2 dbSUPER 10.4 -139.2 -139199 5.6 PKNOX1 ARNT FEZF1 ZNF2 TCF12 ZNF766 GATA2 JUNB ZNF518A ZNF592 PROK1 KCNC4 KCNC4-AS1 SLC16A4 LAMTOR5-AS1 LAMTOR5 GC01M110350
GH01G110421 1.8 FANTOM5 Ensembl ENCODE 10 -211.4 -211437 0.4 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF766 ENSG00000258634 PROK1 CEPT1 CD53 LOC440600 RBM15 KCNC4 KCNC4-AS1 KCNA10 GC01M110420
GH01G110234 1.4 Ensembl ENCODE dbSUPER 12.2 -25.9 -25889 2.0 ATF1 INSM2 FEZF1 ZNF2 RFX5 GATA2 ZNF366 ZSCAN5C FOS RELB PROK1 LOC440600 KCNC4 KCNC4-AS1 ENSG00000235526 LOC105378897 ENSG00000200536 RBM15 UBL4B KCNA10
GH01G110312 1.3 Ensembl ENCODE dbSUPER 12.2 -102.6 -102638 0.4 WRNIP1 ZNF2 RAD21 ZNF366 ZNF143 ZNF654 REST KLF16 GLIS1 NBN LOC440600 RBM15 KCNC4 KCNC4-AS1 ENSG00000200536 ENSG00000235526 LOC105378897 PROK1 ENSG00000258634 UBL4B
GH01G110307 1.2 Ensembl ENCODE dbSUPER 12.2 -99.0 -99036 3.2 CTCF BHLHE40 CEBPB CEBPG ZFHX2 ZNF316 CEBPA HMBOX1 SMC3 FOS LOC440600 RBM15 KCNC4 KCNC4-AS1 SLC16A4 ENSG00000200536 ENSG00000235526 LOC105378897 PROK1 KCNA10
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KCNC4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KCNC4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000011241 -1013 2401 HDGF ATF1 PKNOX1 GLI4 ZNF2 GLIS2 FOS ZNF263 SP3 SP5

Genomic Location for KCNC4-AS1 Gene

Chromosome:
1
Start:
110,208,450 bp from pter
End:
110,209,987 bp from pter
Size:
1,538 bases
Orientation:
Minus strand

Genomic View for KCNC4-AS1 Gene

Genes around KCNC4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KCNC4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KCNC4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KCNC4-AS1 Gene

Proteins for KCNC4-AS1 Gene

Post-translational modifications for KCNC4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KCNC4-AS1 Gene

Domains & Families for KCNC4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KCNC4-AS1 Gene

Function for KCNC4-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KCNC4-AS1 Gene

Localization for KCNC4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KCNC4-AS1 Gene

Pathways & Interactions for KCNC4-AS1 Gene

SuperPathways for KCNC4-AS1 Gene

No Data Available

Interacting Proteins for KCNC4-AS1 Gene

Gene Ontology (GO) - Biological Process for KCNC4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KCNC4-AS1 Gene

Drugs & Compounds for KCNC4-AS1 Gene

No Compound Related Data Available

Transcripts for KCNC4-AS1 Gene

mRNA/cDNA for KCNC4-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KCNC4-AS1 Gene

No ASD Table

Relevant External Links for KCNC4-AS1 Gene

GeneLoc Exon Structure for
KCNC4-AS1
ECgene alternative splicing isoforms for
KCNC4-AS1

Expression for KCNC4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KCNC4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for KCNC4-AS1 Gene

This gene is overexpressed in Testis (x7.6) and Kidney - Cortex (x4.1).
genes like me logo Genes that share expression patterns with KCNC4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KCNC4-AS1 Gene

Orthologs for KCNC4-AS1 Gene

Evolution for KCNC4-AS1 Gene

ENSEMBL:
Gene Tree for KCNC4-AS1 (if available)
TreeFam:
Gene Tree for KCNC4-AS1 (if available)

No data available for Orthologs for KCNC4-AS1 Gene

Paralogs for KCNC4-AS1 Gene

No data available for Paralogs for KCNC4-AS1 Gene

Variants for KCNC4-AS1 Gene

Sequence variations from dbSNP and Humsavar for KCNC4-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000314239 -- 110,209,312(+) GGGCC(A/G)GTAAA intron-variant, upstream-variant-2KB
rs1000428853 -- 110,209,580(+) AAAGG(C/T)TTTAA intron-variant, upstream-variant-2KB
rs1001309493 -- 110,210,517(+) ACCAG(A/G/T)CGCCG upstream-variant-2KB
rs1001425140 -- 110,210,859(+) GCCTG(A/C)CTTCC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1003786955 -- 110,209,057(+) GGCCC(C/T)TGTCT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KCNC4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv991777 CNV deletion 20482838

Relevant External Links for KCNC4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KCNC4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KCNC4-AS1 Gene

Disorders for KCNC4-AS1 Gene

Relevant External Links for KCNC4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KCNC4-AS1

No disorders were found for KCNC4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KCNC4-AS1 Gene

Publications for KCNC4-AS1 Gene

No publications were found for KCNC4-AS1 Gene.

Products for KCNC4-AS1 Gene

Sources for KCNC4-AS1 Gene

Content
Loading form....